Rmu_co8385955.1_g000002

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8385955.1
OG0021542
Physical Location & Seq
Reverse (-)
399 .. 900
502 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8385955.1_g000002.1.cds

Sequence Viewer

Length: 369 bp
atgctcatatttggcccgaagtttgtttccttctgttgcaggtggggtgaaaagtatgatggacatggtgggagtgagaaatacactgtccaatgggctgaacgctgtgaaggagatggctacttgaaatggggtgacaaatgggatgaacattttgatccaaatggccatggagtgaagcagggtgaaacacggtgggatggcaagtatggagagtgctggaacaaaacatggggcgagggcgccacaatggttcagggtgggtccataagtatgggaagagcagcagtggtgatcactgggatacacatgagcaggaagacacctggtatgaggattcccccactttggtttctatcactgctttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

13.82

Weight (kDa)

7.69

Isoelectric Point (pI)

26.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021542)

Species Orthologous Gene IDs
rosa_laevigata RLG00000014278
rosa_multiflora Rmu_co8385955.1_g000002 Rmu_sc0006767.1_g000006
rosa_samantha Rh6AG130600
rosa_wichuraiana Rw6G011370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 30
Acc36I ACCTGC 1 cut(s) 30
AccB1I GGYRCC 1 cut(s) 242
AclWI GGATC 1 cut(s) 152
AcoI YGGCCR 1 cut(s) 166
AcyI GRCGYC 1 cut(s) 243
AfiI CCNNNNNNNGG 1 cut(s) 348
AgsI TTSAA 1 cut(s) 127
AjnI CCWGG 1 cut(s) 325
AlwI GGATC 1 cut(s) 152
AoxI GGCC 2 cut(s) 13, 166
ApeKI GCWGC 1 cut(s) 284
AspLEI GCGC 1 cut(s) 245
AspS9I GGNCC 2 cut(s) 14, 264
AsuHPI GGTGA 4 cut(s) 59, 146, 197, 304
AvaII GGWCC 1 cut(s) 264
BalI TGGCCA 1 cut(s) 168
BanI GGYRCC 1 cut(s) 242
BbsI GAAGAC 1 cut(s) 326
BbvI GCAGC 1 cut(s) 296
BccI CCATC 3 cut(s) 53, 110, 194
BciT130I CCWGG 1 cut(s) 327
BciVI GTATCC 1 cut(s) 297
BclI TGATCA 1 cut(s) 294
BfoI RGCGCY 1 cut(s) 246
BfuAI ACCTGC 1 cut(s) 30
BfuI GTATCC 1 cut(s) 297
BisI GCNGC 1 cut(s) 285
BlsI GCNGC 1 cut(s) 286
Bme1390I CCNGG 1 cut(s) 327
Bme18I GGWCC 1 cut(s) 264
BmgT120I GGNCC 2 cut(s) 14, 264
BmiI GGNNCC 2 cut(s) 244, 265
BmrFI CCNGG 1 cut(s) 327
BmrI ACTGGG 1 cut(s) 309
BmuI ACTGGG 1 cut(s) 309
BpiI GAAGAC 1 cut(s) 326
BsaHI GRCGYC 1 cut(s) 243
BsaJI CCNNGG 1 cut(s) 169
Bsc4I CCNNNNNNNGG 1 cut(s) 348
Bse1I ACTGG 1 cut(s) 304
BseBI CCWGG 1 cut(s) 327
BseDI CCNNGG 1 cut(s) 169
BseGI GGATG 2 cut(s) 151, 205
BseLI CCNNNNNNNGG 1 cut(s) 348
BseNI ACTGG 1 cut(s) 304
BseXI GCAGC 1 cut(s) 296
BshFI GGCC 2 cut(s) 15, 168
BshNI GGYRCC 1 cut(s) 242
BslI CCNNNNNNNGG 1 cut(s) 348
BsnI GGCC 2 cut(s) 15, 168
Bsp143I GATC 2 cut(s) 157, 294
Bsp19I CCATGG 1 cut(s) 169
BspANI GGCC 2 cut(s) 15, 168
BspLI GGNNCC 2 cut(s) 244, 265
BspMI ACCTGC 1 cut(s) 30
BspPI GGATC 1 cut(s) 152
BspQI GCTCTTC 1 cut(s) 274
BspT107I GGYRCC 1 cut(s) 242
BsrI ACTGG 1 cut(s) 304
BssECI CCNNGG 1 cut(s) 169
BssMI GATC 2 cut(s) 157, 294
BssNI GRCGYC 1 cut(s) 243
BssT1I CCWWGG 1 cut(s) 169
Bst2UI CCWGG 1 cut(s) 327
Bst4CI ACNGT 2 cut(s) 88, 195
Bst6I CTCTTC 1 cut(s) 274
BstACI GRCGYC 1 cut(s) 243
BstDSI CCRYGG 1 cut(s) 169
BstF5I GGATG 2 cut(s) 151, 205
BstH2I RGCGCY 1 cut(s) 246
BstHHI GCGC 1 cut(s) 245
BstKTI GATC 2 cut(s) 160, 297
BstMBI GATC 2 cut(s) 157, 294
BstNI CCWGG 1 cut(s) 327
BstSCI CCNGG 1 cut(s) 325
BstV1I GCAGC 1 cut(s) 296
BstV2I GAAGAC 1 cut(s) 326
BstXI CCANNNNNNTGG 1 cut(s) 274
BsuI GTATCC 1 cut(s) 297
BsuRI GGCC 2 cut(s) 15, 168
BtgI CCRYGG 1 cut(s) 169
BtsCI GGATG 2 cut(s) 151, 205
BtsI GCAGTG 2 cut(s) 294, 359
BtsIMutI CAGTG 4 cut(s) 84, 294, 297, 359
BveI ACCTGC 1 cut(s) 30
CfoI GCGC 1 cut(s) 245
Cfr13I GGNCC 2 cut(s) 14, 264
CsiI ACCWGGT 1 cut(s) 325
CviAII CATG 4 cut(s) 65, 170, 231, 310
CviJI RGCY 4 cut(s) 15, 98, 120, 168
CviKI_1 RGCY 4 cut(s) 15, 98, 120, 168
DinI GGCGCC 1 cut(s) 244
DpnI GATC 2 cut(s) 159, 296
DpnII GATC 2 cut(s) 157, 294
EaeI YGGCCR 1 cut(s) 166
Eam1104I CTCTTC 1 cut(s) 274
EarI CTCTTC 1 cut(s) 274
Eco130I CCWWGG 1 cut(s) 169
Eco47I GGWCC 1 cut(s) 264
EcoRII CCWGG 1 cut(s) 325
EcoT14I CCWWGG 1 cut(s) 169
EgeI GGCGCC 1 cut(s) 244
EheI GGCGCC 1 cut(s) 244
ErhI CCWWGG 1 cut(s) 169
FaeI CATG 4 cut(s) 68, 173, 234, 313
FatI CATG 4 cut(s) 64, 169, 230, 309
FbaI TGATCA 1 cut(s) 294
Fnu4HI GCNGC 1 cut(s) 285
FokI GGATG 2 cut(s) 158, 212
Fsp4HI GCNGC 1 cut(s) 285
GlaI GCGC 1 cut(s) 244
GluI GCNGC 1 cut(s) 285
HaeII RGCGCY 1 cut(s) 246
HaeIII GGCC 2 cut(s) 15, 168
HhaI GCGC 1 cut(s) 245
Hin1I GRCGYC 1 cut(s) 243
Hin1II CATG 4 cut(s) 68, 173, 234, 313
Hin6I GCGC 1 cut(s) 243
HinP1I GCGC 1 cut(s) 243
HinfI GANTC 1 cut(s) 337
HphI GGTGA 4 cut(s) 59, 146, 197, 304
HpyAV CCTTC 2 cut(s) 40, 104
HpyCH4III ACNGT 2 cut(s) 88, 195
HpyCH4V TGCA 1 cut(s) 39
Hsp92I GRCGYC 1 cut(s) 243
Hsp92II CATG 4 cut(s) 68, 173, 234, 313
HspAI GCGC 1 cut(s) 243
KasI GGCGCC 1 cut(s) 242
Ksp22I TGATCA 1 cut(s) 294
Kzo9I GATC 2 cut(s) 157, 294
LguI GCTCTTC 1 cut(s) 274
LpnPI CCDG 8 cut(s) 25, 167, 205, 242, 285, 301, 312, 339
Lsp1109I GCAGC 1 cut(s) 296
MabI ACCWGGT 1 cut(s) 325
MaeIII GTNAC 1 cut(s) 134
MalI GATC 2 cut(s) 159, 296
MboI GATC 2 cut(s) 157, 294
MboII GAAGA 2 cut(s) 291, 331
MlsI TGGCCA 1 cut(s) 168
MluNI TGGCCA 1 cut(s) 168
Mly113I GGCGCC 1 cut(s) 243
MnlI CCTC 2 cut(s) 232, 327
Mox20I TGGCCA 1 cut(s) 168
MscI TGGCCA 1 cut(s) 168
MslI CAYNNNNRTG 1 cut(s) 272
Msp20I TGGCCA 1 cut(s) 168
MspR9I CCNGG 1 cut(s) 327
MvaI CCWGG 1 cut(s) 327
NarI GGCGCC 1 cut(s) 243
NcoI CCATGG 1 cut(s) 169
NdeII GATC 2 cut(s) 157, 294
NlaIII CATG 4 cut(s) 68, 173, 234, 313
NlaIV GGNNCC 2 cut(s) 244, 265
NmuCI GTSAC 1 cut(s) 134
PaqCI CACCTGC 1 cut(s) 30
PciSI GCTCTTC 1 cut(s) 274
PfeI GAWTC 1 cut(s) 337
PkrI GCNGC 1 cut(s) 286
PluTI GGCGCC 1 cut(s) 246
Psp6I CCWGG 1 cut(s) 325
PspGI CCWGG 1 cut(s) 325
PspN4I GGNNCC 2 cut(s) 244, 265
PspPI GGNCC 2 cut(s) 14, 264
RseI CAYNNNNRTG 1 cut(s) 272
SapI GCTCTTC 1 cut(s) 274
SatI GCNGC 1 cut(s) 285
Sau3AI GATC 2 cut(s) 157, 294
Sau96I GGNCC 2 cut(s) 14, 264
ScrFI CCNGG 1 cut(s) 327
SetI ASST 2 cut(s) 44, 328
SexAI ACCWGGT 1 cut(s) 325
SfoI GGCGCC 1 cut(s) 244
SinI GGWCC 1 cut(s) 264
SmiMI CAYNNNNRTG 1 cut(s) 272
SspDI GGCGCC 1 cut(s) 242
StyD4I CCNGG 1 cut(s) 325
StyI CCWWGG 1 cut(s) 169
TaaI ACNGT 2 cut(s) 88, 195
TfiI GAWTC 1 cut(s) 337
TscAI CASTG 4 cut(s) 91, 294, 304, 366
TseFI GTSAC 1 cut(s) 134
TseI GCWGC 1 cut(s) 284
Tsp45I GTSAC 1 cut(s) 134
TspDTI ATGAA 1 cut(s) 162
TspRI CASTG 4 cut(s) 91, 294, 304, 366
VpaK11BI GGWCC 1 cut(s) 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.