Rh6AG130600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0021542
Physical Location & Seq
Forward (+)
19730515 .. 19735416
4902 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG130600.1

Sequence Viewer

Length: 396 bp
ATGCCTCCACCTCCTCGAGATGAGGTGACCAAGAATGATTGTGCCCAAAGTTGGTCAGCAAAGGCCATGTGGGGTGAAAAGTATGATGGACATGGTGGGAGTGAGAAATACACTGTCCAATGGGCTGAACGCTGTGAAGGAGATGGCTACTTGAAATGGGGTGACAAATGGGATGAACATTTTGATCCAAATGGCCATGGAGTGAAGCAGGGTGAAACACGGTGGGATGGCAAGTATGGAGAGTGCTGGAACAAAACATGGGGCGAGGGCGCCACAATGGTTCAGGGTGGGTCCATAAGTATGGGAAGAGCAGCAGTGGTGATCACTGGGATACACATGAGCAGGAAGACACCTGGTATGAGGATTCCCCCACTTTGGTTTCTATCACTGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

131

Amino Acids

14.73

Weight (kDa)

6.41

Isoelectric Point (pI)

31.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0021542)

Species Orthologous Gene IDs
rosa_laevigata RLG00000014278
rosa_multiflora Rmu_co8385955.1_g000002 Rmu_sc0006767.1_g000006
rosa_samantha Rh6AG130600
rosa_wichuraiana Rw6G011370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 269
AclWI GGATC 1 cut(s) 179
AcoI YGGCCR 1 cut(s) 193
AcyI GRCGYC 1 cut(s) 270
AfiI CCNNNNNNNGG 2 cut(s) 51, 375
AgsI TTSAA 1 cut(s) 154
AjnI CCWGG 1 cut(s) 352
AlwI GGATC 1 cut(s) 179
Ama87I CYCGRG 1 cut(s) 15
AoxI GGCC 2 cut(s) 63, 193
ApeKI GCWGC 1 cut(s) 311
AspLEI GCGC 1 cut(s) 272
AspS9I GGNCC 1 cut(s) 291
AsuHPI GGTGA 5 cut(s) 37, 86, 173, 224, 331
AvaI CYCGRG 1 cut(s) 15
AvaII GGWCC 1 cut(s) 291
BaeGI GKGCMC 1 cut(s) 46
BalI TGGCCA 1 cut(s) 195
BanI GGYRCC 1 cut(s) 269
BbsI GAAGAC 1 cut(s) 353
BbvI GCAGC 1 cut(s) 323
BccI CCATC 3 cut(s) 80, 137, 221
BciT130I CCWGG 1 cut(s) 354
BciVI GTATCC 1 cut(s) 324
BclI TGATCA 1 cut(s) 321
BfoI RGCGCY 1 cut(s) 273
BfuI GTATCC 1 cut(s) 324
BisI GCNGC 1 cut(s) 312
BlsI GCNGC 1 cut(s) 313
Bme1390I CCNGG 1 cut(s) 354
Bme18I GGWCC 1 cut(s) 291
BmeT110I CYCGRG 1 cut(s) 15
BmgT120I GGNCC 1 cut(s) 291
BmiI GGNNCC 2 cut(s) 271, 292
BmrFI CCNGG 1 cut(s) 354
BmrI ACTGGG 1 cut(s) 336
BmuI ACTGGG 1 cut(s) 336
BpiI GAAGAC 1 cut(s) 353
BsaHI GRCGYC 1 cut(s) 270
BsaJI CCNNGG 1 cut(s) 196
Bsc4I CCNNNNNNNGG 2 cut(s) 51, 375
Bse1I ACTGG 1 cut(s) 331
BseBI CCWGG 1 cut(s) 354
BseDI CCNNGG 1 cut(s) 196
BseGI GGATG 2 cut(s) 178, 232
BseLI CCNNNNNNNGG 2 cut(s) 51, 375
BseNI ACTGG 1 cut(s) 331
BseSI GKGCMC 1 cut(s) 46
BseXI GCAGC 1 cut(s) 323
BshFI GGCC 2 cut(s) 65, 195
BshNI GGYRCC 1 cut(s) 269
BsiHKCI CYCGRG 1 cut(s) 15
BslI CCNNNNNNNGG 2 cut(s) 51, 375
BsnI GGCC 2 cut(s) 65, 195
BsoBI CYCGRG 1 cut(s) 15
Bsp1286I GDGCHC 1 cut(s) 46
Bsp143I GATC 2 cut(s) 184, 321
Bsp19I CCATGG 1 cut(s) 196
BspANI GGCC 2 cut(s) 65, 195
BspLI GGNNCC 2 cut(s) 271, 292
BspPI GGATC 1 cut(s) 179
BspQI GCTCTTC 1 cut(s) 301
BspT107I GGYRCC 1 cut(s) 269
BsrI ACTGG 1 cut(s) 331
BssECI CCNNGG 1 cut(s) 196
BssMI GATC 2 cut(s) 184, 321
BssNI GRCGYC 1 cut(s) 270
BssT1I CCWWGG 1 cut(s) 196
Bst2UI CCWGG 1 cut(s) 354
Bst4CI ACNGT 2 cut(s) 115, 222
Bst6I CTCTTC 1 cut(s) 301
BstACI GRCGYC 1 cut(s) 270
BstDSI CCRYGG 1 cut(s) 196
BstEII GGTNACC 1 cut(s) 25
BstF5I GGATG 2 cut(s) 178, 232
BstH2I RGCGCY 1 cut(s) 273
BstHHI GCGC 1 cut(s) 272
BstKTI GATC 2 cut(s) 187, 324
BstMBI GATC 2 cut(s) 184, 321
BstNI CCWGG 1 cut(s) 354
BstPI GGTNACC 1 cut(s) 25
BstSCI CCNGG 1 cut(s) 352
BstSLI GKGCMC 1 cut(s) 46
BstV1I GCAGC 1 cut(s) 323
BstV2I GAAGAC 1 cut(s) 353
BstXI CCANNNNNNTGG 1 cut(s) 301
BsuI GTATCC 1 cut(s) 324
BsuRI GGCC 2 cut(s) 65, 195
BtgI CCRYGG 1 cut(s) 196
BtsCI GGATG 2 cut(s) 178, 232
BtsI GCAGTG 2 cut(s) 321, 386
BtsIMutI CAGTG 4 cut(s) 111, 321, 324, 386
CfoI GCGC 1 cut(s) 272
Cfr13I GGNCC 1 cut(s) 291
CsiI ACCWGGT 1 cut(s) 352
CviAII CATG 5 cut(s) 67, 92, 197, 258, 337
CviJI RGCY 4 cut(s) 65, 125, 147, 195
CviKI_1 RGCY 4 cut(s) 65, 125, 147, 195
DinI GGCGCC 1 cut(s) 271
DpnI GATC 2 cut(s) 186, 323
DpnII GATC 2 cut(s) 184, 321
EaeI YGGCCR 1 cut(s) 193
Eam1104I CTCTTC 1 cut(s) 301
EarI CTCTTC 1 cut(s) 301
Eco130I CCWWGG 1 cut(s) 196
Eco47I GGWCC 1 cut(s) 291
Eco88I CYCGRG 1 cut(s) 15
Eco91I GGTNACC 1 cut(s) 25
EcoO65I GGTNACC 1 cut(s) 25
EcoRII CCWGG 1 cut(s) 352
EcoT14I CCWWGG 1 cut(s) 196
EgeI GGCGCC 1 cut(s) 271
EheI GGCGCC 1 cut(s) 271
ErhI CCWWGG 1 cut(s) 196
FaeI CATG 5 cut(s) 70, 95, 200, 261, 340
FatI CATG 5 cut(s) 66, 91, 196, 257, 336
FbaI TGATCA 1 cut(s) 321
Fnu4HI GCNGC 1 cut(s) 312
FokI GGATG 2 cut(s) 185, 239
Fsp4HI GCNGC 1 cut(s) 312
GlaI GCGC 1 cut(s) 271
GluI GCNGC 1 cut(s) 312
HaeII RGCGCY 1 cut(s) 273
HaeIII GGCC 2 cut(s) 65, 195
HhaI GCGC 1 cut(s) 272
Hin1I GRCGYC 1 cut(s) 270
Hin1II CATG 5 cut(s) 70, 95, 200, 261, 340
Hin6I GCGC 1 cut(s) 270
HinP1I GCGC 1 cut(s) 270
HinfI GANTC 1 cut(s) 364
HphI GGTGA 5 cut(s) 37, 86, 173, 224, 331
Hpy188III TCNNGA 1 cut(s) 17
HpyAV CCTTC 1 cut(s) 131
HpyCH4III ACNGT 2 cut(s) 115, 222
Hsp92I GRCGYC 1 cut(s) 270
Hsp92II CATG 5 cut(s) 70, 95, 200, 261, 340
HspAI GCGC 1 cut(s) 270
KasI GGCGCC 1 cut(s) 269
Ksp22I TGATCA 1 cut(s) 321
Kzo9I GATC 2 cut(s) 184, 321
LguI GCTCTTC 1 cut(s) 301
LpnPI CCDG 7 cut(s) 194, 232, 269, 312, 328, 339, 366
Lsp1109I GCAGC 1 cut(s) 323
MabI ACCWGGT 1 cut(s) 352
MaeIII GTNAC 2 cut(s) 25, 161
MalI GATC 2 cut(s) 186, 323
MboI GATC 2 cut(s) 184, 321
MboII GAAGA 2 cut(s) 318, 358
MhlI GDGCHC 1 cut(s) 46
MlsI TGGCCA 1 cut(s) 195
MluNI TGGCCA 1 cut(s) 195
Mly113I GGCGCC 1 cut(s) 270
MnlI CCTC 6 cut(s) 15, 16, 21, 24, 259, 354
Mox20I TGGCCA 1 cut(s) 195
MscI TGGCCA 1 cut(s) 195
MslI CAYNNNNRTG 1 cut(s) 299
Msp20I TGGCCA 1 cut(s) 195
MspR9I CCNGG 1 cut(s) 354
MvaI CCWGG 1 cut(s) 354
NarI GGCGCC 1 cut(s) 270
NcoI CCATGG 1 cut(s) 196
NdeII GATC 2 cut(s) 184, 321
NlaIII CATG 5 cut(s) 70, 95, 200, 261, 340
NlaIV GGNNCC 2 cut(s) 271, 292
NmuCI GTSAC 2 cut(s) 25, 161
PaeR7I CTCGAG 1 cut(s) 15
PciSI GCTCTTC 1 cut(s) 301
PfeI GAWTC 1 cut(s) 364
PkrI GCNGC 1 cut(s) 313
PluTI GGCGCC 1 cut(s) 273
Psp6I CCWGG 1 cut(s) 352
PspEI GGTNACC 1 cut(s) 25
PspGI CCWGG 1 cut(s) 352
PspN4I GGNNCC 2 cut(s) 271, 292
PspPI GGNCC 1 cut(s) 291
RseI CAYNNNNRTG 1 cut(s) 299
SapI GCTCTTC 1 cut(s) 301
SatI GCNGC 1 cut(s) 312
Sau3AI GATC 2 cut(s) 184, 321
Sau96I GGNCC 1 cut(s) 291
ScrFI CCNGG 1 cut(s) 354
SduI GDGCHC 1 cut(s) 46
SetI ASST 3 cut(s) 13, 27, 355
SexAI ACCWGGT 1 cut(s) 352
SfoI GGCGCC 1 cut(s) 271
Sfr274I CTCGAG 1 cut(s) 15
SinI GGWCC 1 cut(s) 291
SlaI CTCGAG 1 cut(s) 15
SmiMI CAYNNNNRTG 1 cut(s) 299
SmlI CTYRAG 1 cut(s) 15
SmoI CTYRAG 1 cut(s) 15
SspDI GGCGCC 1 cut(s) 269
StyD4I CCNGG 1 cut(s) 352
StyI CCWWGG 1 cut(s) 196
TaaI ACNGT 2 cut(s) 115, 222
TaqI TCGA 1 cut(s) 16
TfiI GAWTC 1 cut(s) 364
TscAI CASTG 4 cut(s) 118, 321, 331, 393
TseFI GTSAC 2 cut(s) 25, 161
TseI GCWGC 1 cut(s) 311
Tsp45I GTSAC 2 cut(s) 25, 161
TspDTI ATGAA 1 cut(s) 189
TspRI CASTG 4 cut(s) 118, 321, 331, 393
VpaK11BI GGWCC 1 cut(s) 291
XhoI CTCGAG 1 cut(s) 15
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.