Rmu_sc0006767.1_g000006

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006767.1
OG0021542
Physical Location & Seq
Forward (+)
16060 .. 18927
2868 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006767.1_g000006.1.cds

Sequence Viewer

Length: 651 bp
atgtggcaagaattggcttgcagagattatctgaactcccatgatcgtagtcatcatggggagacgcagacatcagggggagatgtctacatgttcacctcgaaacgtgaagggtggggtgaaaagtatgatggacatggtgggagtgagaaatacactgtccaatgggctgaacgctgtgaaggagatggctacttgaaatggggtgacaaatgggatgaacattttgatccaaatggccatggagtgaagcagggtgaaacacggtgggatggcaagtatggagagtgctggaacaaaacatggggcgagggcgccacaatggttcagggtgggtccataagtatgggaagagcagcagtggtgatcactgggatacacatgagcaggaagacacctggtgctgctgctactactactactaccacagcctgtggtggctatcaatactgtcttcctatctccctttgtagatcgaacaaccatcgtgtatgtcattacaataatggcagcggcgaccatattggtgcaatggtaatatatggcgaccatatttggtggaatgccgaccgtggtggtgatcgtgctagtgattgtagtaagggttgcagtagtggcaaagaggagttgggatcccgtgatggtggttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

216

Amino Acids

23.77

Weight (kDa)

6.11

Isoelectric Point (pI)

37.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021542)

Species Orthologous Gene IDs
rosa_laevigata RLG00000014278
rosa_multiflora Rmu_co8385955.1_g000002 Rmu_sc0006767.1_g000006
rosa_samantha Rh6AG130600
rosa_wichuraiana Rw6G011370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 314
AccI GTMKAC 1 cut(s) 87
AciI CCGC 1 cut(s) 513
AclWI GGATC 3 cut(s) 224, 627, 640
AcoI YGGCCR 1 cut(s) 238
AcyI GRCGYC 1 cut(s) 315
AdeI CACNNNGTG 1 cut(s) 401
AflIII ACRYGT 1 cut(s) 90
AgsI TTSAA 1 cut(s) 199
AjnI CCWGG 1 cut(s) 397
Alw26I GTCTC 1 cut(s) 56
AlwI GGATC 3 cut(s) 224, 627, 640
AoxI GGCC 1 cut(s) 238
ApeKI GCWGC 4 cut(s) 356, 404, 407, 510
AspLEI GCGC 1 cut(s) 317
AspS9I GGNCC 1 cut(s) 336
AsuHPI GGTGA 6 cut(s) 88, 131, 218, 269, 376, 590
AvaII GGWCC 1 cut(s) 336
BalI TGGCCA 1 cut(s) 240
BamHI GGATCC 1 cut(s) 632
BanI GGYRCC 1 cut(s) 314
BbsI GAAGAC 2 cut(s) 398, 446
BbvI GCAGC 4 cut(s) 368, 391, 394, 522
BccI CCATC 5 cut(s) 125, 182, 266, 492, 635
BciT130I CCWGG 1 cut(s) 399
BciVI GTATCC 1 cut(s) 369
BclI TGATCA 1 cut(s) 366
BcoDI GTCTC 1 cut(s) 56
BfaI CTAG 1 cut(s) 588
BfoI RGCGCY 1 cut(s) 318
BfuI GTATCC 1 cut(s) 369
BisI GCNGC 5 cut(s) 357, 405, 408, 511, 514
BlsI GCNGC 5 cut(s) 358, 406, 409, 512, 515
Bme1390I CCNGG 1 cut(s) 399
Bme18I GGWCC 1 cut(s) 336
BmgT120I GGNCC 1 cut(s) 336
BmiI GGNNCC 3 cut(s) 316, 337, 634
BmrFI CCNGG 1 cut(s) 399
BmrI ACTGGG 1 cut(s) 381
BmuI ACTGGG 1 cut(s) 381
BpiI GAAGAC 2 cut(s) 398, 446
BsaHI GRCGYC 1 cut(s) 315
BsaJI CCNNGG 2 cut(s) 241, 571
Bse1I ACTGG 1 cut(s) 376
Bse3DI GCAATG 1 cut(s) 537
BseBI CCWGG 1 cut(s) 399
BseDI CCNNGG 2 cut(s) 241, 571
BseGI GGATG 2 cut(s) 223, 277
BseMI GCAATG 1 cut(s) 537
BseNI ACTGG 1 cut(s) 376
BseRI GAGGAG 1 cut(s) 638
BseXI GCAGC 4 cut(s) 368, 391, 394, 522
Bsh1285I CGRYCG 1 cut(s) 571
BshFI GGCC 1 cut(s) 240
BshNI GGYRCC 1 cut(s) 314
BsiEI CGRYCG 1 cut(s) 571
BsmAI GTCTC 1 cut(s) 56
BsmBI CGTCTC 1 cut(s) 56
BsmI GAATGC 1 cut(s) 568
BsnI GGCC 1 cut(s) 240
Bsp143I GATC 6 cut(s) 43, 229, 366, 473, 580, 632
Bsp19I CCATGG 1 cut(s) 241
BspACI CCGC 1 cut(s) 513
BspANI GGCC 1 cut(s) 240
BspLI GGNNCC 3 cut(s) 316, 337, 634
BspPI GGATC 3 cut(s) 224, 627, 640
BspQI GCTCTTC 1 cut(s) 346
BspT107I GGYRCC 1 cut(s) 314
BsrDI GCAATG 1 cut(s) 537
BsrI ACTGG 1 cut(s) 376
BssECI CCNNGG 2 cut(s) 241, 571
BssMI GATC 6 cut(s) 43, 229, 366, 473, 580, 632
BssNI GRCGYC 1 cut(s) 315
BssT1I CCWWGG 1 cut(s) 241
Bst2UI CCWGG 1 cut(s) 399
Bst4CI ACNGT 4 cut(s) 160, 267, 452, 572
Bst6I CTCTTC 1 cut(s) 346
BstACI GRCGYC 1 cut(s) 315
BstC8I GCNNGC 1 cut(s) 19
BstDSI CCRYGG 2 cut(s) 241, 571
BstF5I GGATG 2 cut(s) 223, 277
BstH2I RGCGCY 1 cut(s) 318
BstHHI GCGC 1 cut(s) 317
BstKTI GATC 6 cut(s) 46, 232, 369, 476, 583, 635
BstMAI GTCTC 1 cut(s) 56
BstMBI GATC 6 cut(s) 43, 229, 366, 473, 580, 632
BstMCI CGRYCG 1 cut(s) 571
BstMWI GCNNNNNNNGC 1 cut(s) 615
BstNI CCWGG 1 cut(s) 399
BstNSI RCATGY 1 cut(s) 94
BstSCI CCNGG 1 cut(s) 397
BstV1I GCAGC 4 cut(s) 368, 391, 394, 522
BstV2I GAAGAC 2 cut(s) 398, 446
BstX2I RGATCY 1 cut(s) 632
BstXI CCANNNNNNTGG 1 cut(s) 346
BstYI RGATCY 1 cut(s) 632
BsuI GTATCC 1 cut(s) 369
BsuRI GGCC 1 cut(s) 240
BtgI CCRYGG 2 cut(s) 241, 571
BtsCI GGATG 2 cut(s) 223, 277
BtsI GCAGTG 1 cut(s) 366
BtsIMutI CAGTG 3 cut(s) 156, 366, 369
Cac8I GCNNGC 1 cut(s) 19
CfoI GCGC 1 cut(s) 317
Cfr13I GGNCC 1 cut(s) 336
CseI GACGC 1 cut(s) 73
CsiI ACCWGGT 1 cut(s) 397
CviAII CATG 7 cut(s) 41, 56, 91, 137, 242, 303, 382
CviJI RGCY 6 cut(s) 17, 170, 192, 240, 431, 441
CviKI_1 RGCY 6 cut(s) 17, 170, 192, 240, 431, 441
DinI GGCGCC 1 cut(s) 316
DpnI GATC 6 cut(s) 45, 231, 368, 475, 582, 634
DpnII GATC 6 cut(s) 43, 229, 366, 473, 580, 632
DraIII CACNNNGTG 1 cut(s) 401
EaeI YGGCCR 1 cut(s) 238
Eam1104I CTCTTC 1 cut(s) 346
EarI CTCTTC 1 cut(s) 346
Eco130I CCWWGG 1 cut(s) 241
Eco47I GGWCC 1 cut(s) 336
EcoRII CCWGG 1 cut(s) 397
EcoT14I CCWWGG 1 cut(s) 241
EgeI GGCGCC 1 cut(s) 316
EheI GGCGCC 1 cut(s) 316
ErhI CCWWGG 1 cut(s) 241
Esp3I CGTCTC 1 cut(s) 56
FaeI CATG 7 cut(s) 44, 59, 94, 140, 245, 306, 385
FatI CATG 7 cut(s) 40, 55, 90, 136, 241, 302, 381
FbaI TGATCA 1 cut(s) 366
FblI GTMKAC 1 cut(s) 87
Fnu4HI GCNGC 5 cut(s) 357, 405, 408, 511, 514
FokI GGATG 2 cut(s) 230, 284
Fsp4HI GCNGC 5 cut(s) 357, 405, 408, 511, 514
FspBI CTAG 1 cut(s) 588
GlaI GCGC 1 cut(s) 316
GluI GCNGC 5 cut(s) 357, 405, 408, 511, 514
HaeII RGCGCY 1 cut(s) 318
HaeIII GGCC 1 cut(s) 240
HgaI GACGC 1 cut(s) 73
HhaI GCGC 1 cut(s) 317
Hin1I GRCGYC 1 cut(s) 315
Hin1II CATG 7 cut(s) 44, 59, 94, 140, 245, 306, 385
Hin6I GCGC 1 cut(s) 315
HinP1I GCGC 1 cut(s) 315
HphI GGTGA 6 cut(s) 88, 131, 218, 269, 376, 590
Hpy166II GTNNAC 2 cut(s) 88, 96
Hpy188I TCNGA 1 cut(s) 33
Hpy8I GTNNAC 2 cut(s) 88, 96
HpyAV CCTTC 2 cut(s) 104, 176
HpyCH4III ACNGT 4 cut(s) 160, 267, 452, 572
HpyCH4IV ACGT 1 cut(s) 106
HpyCH4V TGCA 3 cut(s) 21, 530, 609
HpyF10VI GCNNNNNNNGC 1 cut(s) 615
HpySE526I ACGT 1 cut(s) 106
Hsp92I GRCGYC 1 cut(s) 315
Hsp92II CATG 7 cut(s) 44, 59, 94, 140, 245, 306, 385
HspAI GCGC 1 cut(s) 315
KasI GGCGCC 1 cut(s) 314
Ksp22I TGATCA 1 cut(s) 366
Kzo9I GATC 6 cut(s) 43, 229, 366, 473, 580, 632
LguI GCTCTTC 1 cut(s) 346
LpnPI CCDG 9 cut(s) 60, 239, 277, 314, 357, 373, 384, 411, 445
Lsp1109I GCAGC 4 cut(s) 368, 391, 394, 522
MabI ACCWGGT 1 cut(s) 397
MaeI CTAG 1 cut(s) 588
MaeII ACGT 1 cut(s) 106
MaeIII GTNAC 1 cut(s) 206
MalI GATC 6 cut(s) 45, 231, 368, 475, 582, 634
MboI GATC 6 cut(s) 43, 229, 366, 473, 580, 632
MboII GAAGA 3 cut(s) 363, 403, 446
MflI RGATCY 1 cut(s) 632
MlsI TGGCCA 1 cut(s) 240
MluCI AATT 1 cut(s) 11
MluNI TGGCCA 1 cut(s) 240
Mly113I GGCGCC 1 cut(s) 315
MnlI CCTC 3 cut(s) 109, 304, 616
Mox20I TGGCCA 1 cut(s) 240
MscI TGGCCA 1 cut(s) 240
MslI CAYNNNNRTG 2 cut(s) 344, 525
Msp20I TGGCCA 1 cut(s) 240
MspA1I CMGCKG 1 cut(s) 513
MspR9I CCNGG 1 cut(s) 399
Mva1269I GAATGC 1 cut(s) 568
MvaI CCWGG 1 cut(s) 399
MwoI GCNNNNNNNGC 1 cut(s) 615
NarI GGCGCC 1 cut(s) 315
NcoI CCATGG 1 cut(s) 241
NdeII GATC 6 cut(s) 43, 229, 366, 473, 580, 632
NlaIII CATG 7 cut(s) 44, 59, 94, 140, 245, 306, 385
NlaIV GGNNCC 3 cut(s) 316, 337, 634
NmuCI GTSAC 1 cut(s) 206
NspI RCATGY 1 cut(s) 94
PciI ACATGT 1 cut(s) 90
PciSI GCTCTTC 1 cut(s) 346
PctI GAATGC 1 cut(s) 568
PkrI GCNGC 5 cut(s) 358, 406, 409, 512, 515
PluTI GGCGCC 1 cut(s) 318
PscI ACATGT 1 cut(s) 90
Psp6I CCWGG 1 cut(s) 397
PspGI CCWGG 1 cut(s) 397
PspN4I GGNNCC 3 cut(s) 316, 337, 634
PspPI GGNCC 1 cut(s) 336
PsuI RGATCY 1 cut(s) 632
RseI CAYNNNNRTG 2 cut(s) 344, 525
SapI GCTCTTC 1 cut(s) 346
SatI GCNGC 5 cut(s) 357, 405, 408, 511, 514
Sau3AI GATC 6 cut(s) 43, 229, 366, 473, 580, 632
Sau96I GGNCC 1 cut(s) 336
ScrFI CCNGG 1 cut(s) 399
SetI ASST 3 cut(s) 101, 109, 400
SexAI ACCWGGT 1 cut(s) 397
SfoI GGCGCC 1 cut(s) 316
SinI GGWCC 1 cut(s) 336
SmiMI CAYNNNNRTG 2 cut(s) 344, 525
Sse9I AATT 1 cut(s) 11
SsiI CCGC 1 cut(s) 513
SspDI GGCGCC 1 cut(s) 314
SspMI CTAG 1 cut(s) 588
StyD4I CCNGG 1 cut(s) 397
StyI CCWWGG 1 cut(s) 241
TaaI ACNGT 4 cut(s) 160, 267, 452, 572
TaiI ACGT 1 cut(s) 109
TaqI TCGA 2 cut(s) 101, 476
TasI AATT 1 cut(s) 11
TauI GCSGC 1 cut(s) 516
TscAI CASTG 3 cut(s) 163, 366, 376
TseFI GTSAC 1 cut(s) 206
TseI GCWGC 4 cut(s) 356, 404, 407, 510
Tsp45I GTSAC 1 cut(s) 206
TspDTI ATGAA 1 cut(s) 234
TspRI CASTG 3 cut(s) 163, 366, 376
VpaK11BI GGWCC 1 cut(s) 336
XceI RCATGY 1 cut(s) 94
XmiI GTMKAC 1 cut(s) 87
XspI CTAG 1 cut(s) 588
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.