Rw6G011370

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0021542
Physical Location & Seq
Forward (+)
20011922 .. 20016349
4428 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G011370.1

Sequence Viewer

Length: 939 bp
ATGAGCAGAAATGAAGAAATGAAGCTTTCCTGGTCCAACCAGGAAACCCTGTCCAGAAAAGGAAAGCTTGCCAAAACAAGACTCTTGAGCCAACCAAGAAGGGAGATCGAATTAATGAAGTGTACCCTCAATCCCCGGAATAGAACGATCCCTATTTGCTTATATACTAACGATATTTCAGGGTTAAATTATGCGCTTCCCAAAAGCTGCATCAATTCAAGTAAAGAGTTTACTCATACAAGCTTTCAAAAGCTTACCGGGTTTATTGTGGGCAACTCGGTGCATTATTCGATGAACTGTGGACTTGCCCATATGGAGAAATCTGCAGACAATTGGGGAAAGAACAGCCAAGCAGAGAAATGGGCTCATAAGTGGTGTACAATTGATCCAAATACACCGAATGACACTGGTCATGCTCATATTTGGTGGGGTGAAAAGTATGATGGACATGGTGGGAGTGAGAAATACACTGTCCAATGGGCTGAACGCTGTGAAGGAGATGGCTACTTGAAATGGGGTGACAAATGGGATGAACATTTTGATCCAACTGGCCATGGAGTGAAGCAGGGTGAAACGCGGTGGGATGGCAAGTATGGAGAGTGCTGGAACAAAACATGGGGCGAGGGCGCCACAATGGTTCAGGGTGGGTCCATAAGTATGGGAAGAGCAGCAGTGGTGATCACTGGGATACACATGAGCAGGAAGAACACTGGAAATACAAAAGCCATCAGAGAATGCATCACAGATGTCAGAGACTTCATCCGAGATGCCTTCAGAGACTTTGTCGGAAATGCCTTAAGACTTAAGAGACATCATTGGAGATGCCTTCAGAGACTTCATCGGAGATGCCTTCAGAGACTTCATCGGAGATGCCTTCAGAAATTCCATCGGATATGTCATCAGATGGTCTATCGGAGTTGCCTTCAGAGATTCTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

312

Amino Acids

36.35

Weight (kDa)

9.52

Isoelectric Point (pI)

41.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021542)

Species Orthologous Gene IDs
rosa_laevigata RLG00000014278
rosa_multiflora Rmu_co8385955.1_g000002 Rmu_sc0006767.1_g000006
rosa_samantha Rh6AG130600
rosa_wichuraiana Rw6G011370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 626
AccII CGCG 1 cut(s) 577
AciI CCGC 1 cut(s) 577
AclWI GGATC 3 cut(s) 142, 380, 536
AcoI YGGCCR 1 cut(s) 550
AcsI RAATTY 1 cut(s) 881
AcuI CTGAAG 5 cut(s) 757, 812, 836, 860, 908
AcyI GRCGYC 1 cut(s) 627
AfaI GTAC 2 cut(s) 124, 379
AflII CTTAAG 2 cut(s) 796, 803
AgsI TTSAA 3 cut(s) 219, 248, 511
AjnI CCWGG 2 cut(s) 29, 39
AluBI AGCT 5 cut(s) 25, 67, 207, 243, 253
AluI AGCT 5 cut(s) 25, 67, 207, 243, 253
Alw26I GTCTC 5 cut(s) 747, 771, 802, 826, 850
AlwI GGATC 3 cut(s) 142, 380, 536
AoxI GGCC 1 cut(s) 550
ApeKI GCWGC 2 cut(s) 207, 668
ApoI RAATTY 1 cut(s) 881
AseI ATTAAT 1 cut(s) 113
AspLEI GCGC 2 cut(s) 196, 629
AspS9I GGNCC 2 cut(s) 33, 648
AsuC2I CCSGG 2 cut(s) 136, 259
AsuHPI GGTGA 4 cut(s) 443, 530, 581, 688
AvaII GGWCC 2 cut(s) 33, 648
BalI TGGCCA 1 cut(s) 552
BanI GGYRCC 1 cut(s) 626
BanII GRGCYC 1 cut(s) 367
BbvI GCAGC 2 cut(s) 194, 680
BccI CCATC 6 cut(s) 437, 494, 578, 734, 894, 898
BciT130I CCWGG 2 cut(s) 31, 41
BciVI GTATCC 1 cut(s) 681
BclI TGATCA 1 cut(s) 678
BcnI CCSGG 2 cut(s) 136, 259
BcoDI GTCTC 5 cut(s) 747, 771, 802, 826, 850
BfmI CTRYAG 1 cut(s) 324
BfoI RGCGCY 1 cut(s) 630
BfrI CTTAAG 2 cut(s) 796, 803
BfuI GTATCC 1 cut(s) 681
BisI GCNGC 2 cut(s) 208, 669
BlsI GCNGC 2 cut(s) 209, 670
Bme1390I CCNGG 4 cut(s) 31, 41, 136, 259
Bme18I GGWCC 2 cut(s) 33, 648
BmgT120I GGNCC 2 cut(s) 33, 648
BmiI GGNNCC 2 cut(s) 628, 649
BmrFI CCNGG 4 cut(s) 31, 41, 136, 259
BmrI ACTGGG 1 cut(s) 693
BmsI GCATC 6 cut(s) 219, 747, 757, 812, 836, 860
BmuI ACTGGG 1 cut(s) 693
BoxI GACNNNNGTC 1 cut(s) 408
BpuEI CTTGAG 1 cut(s) 106
BpuMI CCSGG 2 cut(s) 136, 259
BsaHI GRCGYC 1 cut(s) 627
BsaJI CCNNGG 2 cut(s) 134, 553
Bse1I ACTGG 4 cut(s) 412, 553, 688, 715
BseBI CCWGG 2 cut(s) 31, 41
BseDI CCNNGG 2 cut(s) 134, 553
BseGI GGATG 3 cut(s) 535, 589, 759
BseNI ACTGG 4 cut(s) 412, 553, 688, 715
BseXI GCAGC 2 cut(s) 194, 680
Bsh1236I CGCG 1 cut(s) 577
BshFI GGCC 1 cut(s) 552
BshNI GGYRCC 1 cut(s) 626
BsiSI CCGG 2 cut(s) 136, 258
BsmAI GTCTC 5 cut(s) 747, 771, 802, 826, 850
BsmI GAATGC 1 cut(s) 740
BsnI GGCC 1 cut(s) 552
Bsp1286I GDGCHC 1 cut(s) 367
Bsp1407I TGTACA 1 cut(s) 377
Bsp143I GATC 5 cut(s) 105, 147, 385, 541, 678
Bsp19I CCATGG 1 cut(s) 553
BspACI CCGC 1 cut(s) 577
BspANI GGCC 1 cut(s) 552
BspFNI CGCG 1 cut(s) 577
BspLI GGNNCC 2 cut(s) 628, 649
BspMAI CTGCAG 1 cut(s) 328
BspPI GGATC 3 cut(s) 142, 380, 536
BspQI GCTCTTC 1 cut(s) 658
BspT107I GGYRCC 1 cut(s) 626
BspTI CTTAAG 2 cut(s) 796, 803
BsrGI TGTACA 1 cut(s) 377
BsrI ACTGG 4 cut(s) 412, 553, 688, 715
BssECI CCNNGG 2 cut(s) 134, 553
BssMI GATC 5 cut(s) 105, 147, 385, 541, 678
BssNI GRCGYC 1 cut(s) 627
BssT1I CCWWGG 1 cut(s) 553
Bst2UI CCWGG 2 cut(s) 31, 41
Bst4CI ACNGT 2 cut(s) 299, 472
Bst6I CTCTTC 1 cut(s) 658
BstACI GRCGYC 1 cut(s) 627
BstAFI CTTAAG 2 cut(s) 796, 803
BstAUI TGTACA 1 cut(s) 377
BstC8I GCNNGC 1 cut(s) 69
BstDSI CCRYGG 1 cut(s) 553
BstF5I GGATG 3 cut(s) 535, 589, 759
BstFNI CGCG 1 cut(s) 577
BstH2I RGCGCY 1 cut(s) 630
BstHHI GCGC 2 cut(s) 196, 629
BstKTI GATC 5 cut(s) 108, 150, 388, 544, 681
BstMAI GTCTC 5 cut(s) 747, 771, 802, 826, 850
BstMBI GATC 5 cut(s) 105, 147, 385, 541, 678
BstNI CCWGG 2 cut(s) 31, 41
BstPAI GACNNNNGTC 1 cut(s) 408
BstSCI CCNGG 4 cut(s) 29, 39, 134, 257
BstSFI CTRYAG 1 cut(s) 324
BstUI CGCG 1 cut(s) 577
BstV1I GCAGC 2 cut(s) 194, 680
BstXI CCANNNNNNTGG 1 cut(s) 658
BsuI GTATCC 1 cut(s) 681
BsuRI GGCC 1 cut(s) 552
BtgI CCRYGG 1 cut(s) 553
BtsCI GGATG 3 cut(s) 535, 589, 759
BtsI GCAGTG 1 cut(s) 678
BtsIMutI CAGTG 5 cut(s) 405, 468, 678, 681, 708
Cac8I GCNNGC 1 cut(s) 69
CfoI GCGC 2 cut(s) 196, 629
Cfr13I GGNCC 2 cut(s) 33, 648
Csp6I GTAC 2 cut(s) 123, 378
CviAII CATG 5 cut(s) 413, 449, 554, 615, 694
CviQI GTAC 2 cut(s) 123, 378
DinI GGCGCC 1 cut(s) 628
DpnI GATC 5 cut(s) 107, 149, 387, 543, 680
DpnII GATC 5 cut(s) 105, 147, 385, 541, 678
EaeI YGGCCR 1 cut(s) 550
Eam1104I CTCTTC 1 cut(s) 658
EarI CTCTTC 1 cut(s) 658
Eco130I CCWWGG 1 cut(s) 553
Eco24I GRGCYC 1 cut(s) 367
Eco47I GGWCC 2 cut(s) 33, 648
Eco57I CTGAAG 5 cut(s) 757, 812, 836, 860, 908
EcoRII CCWGG 2 cut(s) 29, 39
EcoT14I CCWWGG 1 cut(s) 553
EcoT22I ATGCAT 1 cut(s) 740
EcoT38I GRGCYC 1 cut(s) 367
EgeI GGCGCC 1 cut(s) 628
EheI GGCGCC 1 cut(s) 628
ErhI CCWWGG 1 cut(s) 553
FaeI CATG 5 cut(s) 416, 452, 557, 618, 697
FalI AAGNNNNNCTT 2 cut(s) 51, 83
FatI CATG 5 cut(s) 412, 448, 553, 614, 693
FauNDI CATATG 1 cut(s) 312
FbaI TGATCA 1 cut(s) 678
Fnu4HI GCNGC 2 cut(s) 208, 669
FokI GGATG 3 cut(s) 542, 596, 746
FriOI GRGCYC 1 cut(s) 367
Fsp4HI GCNGC 2 cut(s) 208, 669
GlaI GCGC 2 cut(s) 195, 628
GluI GCNGC 2 cut(s) 208, 669
HaeII RGCGCY 1 cut(s) 630
HaeIII GGCC 1 cut(s) 552
HapII CCGG 2 cut(s) 136, 258
HhaI GCGC 2 cut(s) 196, 629
Hin1I GRCGYC 1 cut(s) 627
Hin1II CATG 5 cut(s) 416, 452, 557, 618, 697
Hin6I GCGC 2 cut(s) 194, 627
HinP1I GCGC 2 cut(s) 194, 627
HindIII AAGCTT 4 cut(s) 23, 65, 241, 251
HinfI GANTC 2 cut(s) 81, 930
HpaII CCGG 2 cut(s) 136, 258
HphI GGTGA 4 cut(s) 443, 530, 581, 688
Hpy166II GTNNAC 4 cut(s) 123, 231, 302, 378
Hpy188III TCNNGA 2 cut(s) 54, 85
Hpy8I GTNNAC 4 cut(s) 123, 231, 302, 378
HpyAV CCTTC 7 cut(s) 93, 488, 781, 836, 860, 884, 932
HpyCH4III ACNGT 2 cut(s) 299, 472
HpyCH4V TGCA 4 cut(s) 210, 283, 326, 738
Hsp92I GRCGYC 1 cut(s) 627
Hsp92II CATG 5 cut(s) 416, 452, 557, 618, 697
HspAI GCGC 2 cut(s) 194, 627
KasI GGCGCC 1 cut(s) 626
Ksp22I TGATCA 1 cut(s) 678
Kzo9I GATC 5 cut(s) 105, 147, 385, 541, 678
LguI GCTCTTC 1 cut(s) 658
Lsp1109I GCAGC 2 cut(s) 194, 680
LweI GCATC 6 cut(s) 219, 747, 757, 812, 836, 860
MaeIII GTNAC 1 cut(s) 518
MalI GATC 5 cut(s) 107, 149, 387, 543, 680
MboI GATC 5 cut(s) 105, 147, 385, 541, 678
MboII GAAGA 3 cut(s) 26, 675, 715
MfeI CAATTG 2 cut(s) 331, 381
MhlI GDGCHC 1 cut(s) 367
MlsI TGGCCA 1 cut(s) 552
MluCI AATT 6 cut(s) 110, 187, 214, 331, 381, 881
MluNI TGGCCA 1 cut(s) 552
Mly113I GGCGCC 1 cut(s) 627
MlyI GAGTC 1 cut(s) 75
MmeI TCCRAC 3 cut(s) 60, 569, 766
MnlI CCTC 2 cut(s) 137, 616
Mox20I TGGCCA 1 cut(s) 552
Mph1103I ATGCAT 1 cut(s) 740
MscI TGGCCA 1 cut(s) 552
MseI TTAA 4 cut(s) 113, 185, 797, 804
MslI CAYNNNNRTG 1 cut(s) 656
Msp20I TGGCCA 1 cut(s) 552
MspCI CTTAAG 2 cut(s) 796, 803
MspI CCGG 2 cut(s) 136, 258
MspR9I CCNGG 4 cut(s) 31, 41, 136, 259
MunI CAATTG 2 cut(s) 331, 381
Mva1269I GAATGC 1 cut(s) 740
MvaI CCWGG 2 cut(s) 31, 41
MvnI CGCG 1 cut(s) 577
NarI GGCGCC 1 cut(s) 627
NciI CCSGG 2 cut(s) 136, 259
NcoI CCATGG 1 cut(s) 553
NdeI CATATG 1 cut(s) 312
NdeII GATC 5 cut(s) 105, 147, 385, 541, 678
NlaIII CATG 5 cut(s) 416, 452, 557, 618, 697
NlaIV GGNNCC 2 cut(s) 628, 649
NmuCI GTSAC 1 cut(s) 518
NsiI ATGCAT 1 cut(s) 740
PciSI GCTCTTC 1 cut(s) 658
PctI GAATGC 1 cut(s) 740
PfeI GAWTC 1 cut(s) 930
PflFI GACNNNGTC 1 cut(s) 782
PkrI GCNGC 2 cut(s) 209, 670
PleI GAGTC 1 cut(s) 75
PluTI GGCGCC 1 cut(s) 630
PpsI GAGTC 1 cut(s) 75
PshAI GACNNNNGTC 1 cut(s) 408
PshBI ATTAAT 1 cut(s) 113
Psp6I CCWGG 2 cut(s) 29, 39
PspGI CCWGG 2 cut(s) 29, 39
PspN4I GGNNCC 2 cut(s) 628, 649
PspPI GGNCC 2 cut(s) 33, 648
PstI CTGCAG 1 cut(s) 328
PsyI GACNNNGTC 1 cut(s) 782
RsaI GTAC 2 cut(s) 124, 379
RsaNI GTAC 2 cut(s) 123, 378
RseI CAYNNNNRTG 1 cut(s) 656
SapI GCTCTTC 1 cut(s) 658
SaqAI TTAA 4 cut(s) 113, 185, 797, 804
SatI GCNGC 2 cut(s) 208, 669
Sau3AI GATC 5 cut(s) 105, 147, 385, 541, 678
Sau96I GGNCC 2 cut(s) 33, 648
SchI GAGTC 1 cut(s) 75
ScrFI CCNGG 4 cut(s) 31, 41, 136, 259
SduI GDGCHC 1 cut(s) 367
SetI ASST 5 cut(s) 27, 69, 209, 245, 255
SfaNI GCATC 6 cut(s) 219, 747, 757, 812, 836, 860
SfcI CTRYAG 1 cut(s) 324
SfoI GGCGCC 1 cut(s) 628
SinI GGWCC 2 cut(s) 33, 648
SmiMI CAYNNNNRTG 1 cut(s) 656
SmlI CTYRAG 3 cut(s) 85, 796, 803
SmoI CTYRAG 3 cut(s) 85, 796, 803
Sse9I AATT 6 cut(s) 110, 187, 214, 331, 381, 881
SsiI CCGC 1 cut(s) 577
SspDI GGCGCC 1 cut(s) 626
StyD4I CCNGG 4 cut(s) 29, 39, 134, 257
StyI CCWWGG 1 cut(s) 553
TaaI ACNGT 2 cut(s) 299, 472
TaqI TCGA 2 cut(s) 108, 290
TasI AATT 6 cut(s) 110, 187, 214, 331, 381, 881
TatI WGTACW 1 cut(s) 377
TfiI GAWTC 1 cut(s) 930
Tru1I TTAA 4 cut(s) 113, 185, 797, 804
Tru9I TTAA 4 cut(s) 113, 185, 797, 804
TscAI CASTG 5 cut(s) 412, 475, 678, 688, 715
TseFI GTSAC 1 cut(s) 518
TseI GCWGC 2 cut(s) 207, 668
Tsp45I GTSAC 1 cut(s) 518
TspDTI ATGAA 8 cut(s) 27, 35, 131, 308, 546, 748, 827, 851
TspRI CASTG 5 cut(s) 412, 475, 678, 688, 715
Tth111I GACNNNGTC 1 cut(s) 782
Vha464I CTTAAG 2 cut(s) 796, 803
VpaK11BI GGWCC 2 cut(s) 33, 648
VspI ATTAAT 1 cut(s) 113
XapI RAATTY 1 cut(s) 881
Zsp2I ATGCAT 1 cut(s) 740
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.