Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8386329.1

Orthogroup ID

OG0015099

Physical Location & Seq

Genomic Coordinates Forward (+)

101 .. 682

Gene Structure 582 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8386329.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

atgttttttccaggtgatcgaggaacttctcattcggagctgacctggcctacccgtttgagaattatccaaggagttgcgaaagggatgaagtttctgcatacagagtttgcagcctatgatttgccccatggaaatctcaagtctagcaatattcttttagacaaagattatgagccaattcttaatgactatgcttttcatccactaatcaatcccagcaatgctgcacaaacaatgtttgcttttaagaccccagagtacatagaatcccagcaaatatctccaaaatctgatgtttattgtcttggaatagtcattcttgaaatccttactggaaagttcccgtctcaatatttaagcaatggcaaaggtgggattgatgtggttcaatgggtgcagtcagcaatggccgagcagagagagcaagagctgctagacccagagattgaaaccaatacagaatcagcgaaccagatgctgcagcttctccaaatcggagctgattgcactgagagtaaacctgatcgaagacctgatataagggaggccattaggaggatactcgaggtacaagcctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001558 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006935 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009856 GO:0009987 GO:0010183 GO:0010769 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0022603 GO:0022604 GO:0030054 GO:0030427 GO:0032501 GO:0032502 GO:0035838 GO:0036211 GO:0040008 GO:0040011 GO:0042221 GO:0042330 GO:0042802 GO:0042995 GO:0043170 GO:0043412 GO:0043900 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044463 GO:0044464 GO:0044706 GO:0045595 GO:0048638 GO:0048856 GO:0048868 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0050918 GO:0051128 GO:0051239 GO:0051286 GO:0051510 GO:0051704 GO:0055044 GO:0060284 GO:0065007 GO:0071704 GO:0071944 GO:0080092 GO:0090404 GO:0090406 GO:0120025 GO:0120038 GO:0140096 GO:1901564 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

193

Amino Acids

21.81

Weight (kDa)

5.01

Isoelectric Point (pI)

52.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015099)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G42880 AT5G20690
fragaria_vesca	FvH4_1g09030
malus_domestica	MD02G1095500.v1.1 MD15G1220000.v1.1
prunus_persica	Prupe.7G195600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0095451
rosa_laevigata	RLG00000016568
rosa_multiflora	Rmu_co8386329.1_g000001
rosa_roxburghii	Rroxscaffold_2G00146330
rosa_rugosa	Rorug02G0051200.1
rosa_samantha	Rh2AG099200 Rh2BG100500 Rh2CG102600 Rh2DG100100
rosa_wichuraiana	Rw2G007510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	411
AfaI	GTAC	2 cut(s)	263, 573
AfiI	CCNNNNNNNGG	1 cut(s)	558
AgsI	TTSAA	3 cut(s)	326, 392, 452
AjnI	CCWGG	2 cut(s)	10, 44
AluBI	AGCT	4 cut(s)	40, 433, 487, 503
AluI	AGCT	4 cut(s)	40, 433, 487, 503
Alw26I	GTCTC	1 cut(s)	354
AlwNI	CAGNNNCTG	1 cut(s)	481
Ama87I	CYCGRG	1 cut(s)	566
AoxI	GGCC	3 cut(s)	47, 411, 549
ApeKI	GCWGC	5 cut(s)	113, 227, 433, 481, 484
AsuHPI	GGTGA	1 cut(s)	26
AvaI	CYCGRG	1 cut(s)	566
BbsI	GAAGAC	1 cut(s)	538
BbvI	GCAGC	5 cut(s)	125, 214, 420, 468, 496
BcgI	CGANNNNNNTGC	2 cut(s)	460, 494
BciT130I	CCWGG	2 cut(s)	12, 46
BciVI	GTATCC	1 cut(s)	555
BcoDI	GTCTC	1 cut(s)	354
BfaI	CTAG	2 cut(s)	147, 437
BfmI	CTRYAG	1 cut(s)	482
BfuI	GTATCC	1 cut(s)	555
BisI	GCNGC	5 cut(s)	114, 228, 434, 482, 485
BlsI	GCNGC	5 cut(s)	115, 229, 435, 483, 486
Bme1390I	CCNGG	2 cut(s)	12, 46
BmeT110I	CYCGRG	1 cut(s)	566
BmrFI	CCNGG	2 cut(s)	12, 46
BmsI	GCATC	1 cut(s)	468
BpiI	GAAGAC	1 cut(s)	538
BpuEI	CTTGAG	1 cut(s)	125
BsaJI	CCNNGG	2 cut(s)	70, 130
Bsc4I	CCNNNNNNNGG	1 cut(s)	558
Bse1I	ACTGG	1 cut(s)	340
Bse3DI	GCAATG	3 cut(s)	229, 370, 414
BseBI	CCWGG	2 cut(s)	12, 46
BseDI	CCNNGG	2 cut(s)	70, 130
BseGI	GGATG	2 cut(s)	93, 202
BseLI	CCNNNNNNNGG	1 cut(s)	558
BseMI	GCAATG	3 cut(s)	229, 370, 414
BseMII	CTCAG	1 cut(s)	504
BseNI	ACTGG	1 cut(s)	340
BseXI	GCAGC	5 cut(s)	125, 214, 420, 468, 496
BseYI	CCCAGC	2 cut(s)	218, 273
BsgI	GTGCAG	2 cut(s)	213, 419
BshFI	GGCC	3 cut(s)	49, 413, 551
BsiHKCI	CYCGRG	1 cut(s)	566
BslI	CCNNNNNNNGG	1 cut(s)	558
BsmAI	GTCTC	1 cut(s)	354
BsmBI	CGTCTC	1 cut(s)	354
BsnI	GGCC	3 cut(s)	49, 413, 551
BsoBI	CYCGRG	1 cut(s)	566
Bsp143I	GATC	2 cut(s)	16, 526
Bsp19I	CCATGG	1 cut(s)	130
BspANI	GGCC	3 cut(s)	49, 413, 551
BspCNI	CTCAG	1 cut(s)	505
BspMAI	CTGCAG	1 cut(s)	486
BsrDI	GCAATG	3 cut(s)	229, 370, 414
BsrI	ACTGG	1 cut(s)	340
BssECI	CCNNGG	2 cut(s)	70, 130
BssMI	GATC	2 cut(s)	16, 526
BssT1I	CCWWGG	2 cut(s)	70, 130
Bst2UI	CCWGG	2 cut(s)	12, 46
BstAPI	GCANNNNNTGC	1 cut(s)	433
BstDEI	CTNAG	1 cut(s)	513
BstDSI	CCRYGG	1 cut(s)	130
BstF5I	GGATG	2 cut(s)	93, 202
BstKTI	GATC	2 cut(s)	19, 529
BstMAI	GTCTC	1 cut(s)	354
BstMBI	GATC	2 cut(s)	16, 526
BstMWI	GCNNNNNNNGC	3 cut(s)	46, 424, 433
BstNI	CCWGG	2 cut(s)	12, 46
BstSCI	CCNGG	2 cut(s)	10, 44
BstSFI	CTRYAG	1 cut(s)	482
BstV1I	GCAGC	5 cut(s)	125, 214, 420, 468, 496
BstV2I	GAAGAC	1 cut(s)	538
BsuI	GTATCC	1 cut(s)	555
BsuRI	GGCC	3 cut(s)	49, 413, 551
BtgI	CCRYGG	1 cut(s)	130
BtsCI	GGATG	2 cut(s)	93, 202
BtsIMutI	CAGTG	1 cut(s)	510
CaiI	CAGNNNCTG	1 cut(s)	481
Csp6I	GTAC	2 cut(s)	262, 572
CviAII	CATG	1 cut(s)	131
CviQI	GTAC	2 cut(s)	262, 572
DdeI	CTNAG	1 cut(s)	513
DpnI	GATC	2 cut(s)	18, 528
DpnII	GATC	2 cut(s)	16, 526
EaeI	YGGCCR	1 cut(s)	411
Eco130I	CCWWGG	2 cut(s)	70, 130
Eco88I	CYCGRG	1 cut(s)	566
EcoRII	CCWGG	2 cut(s)	10, 44
EcoT14I	CCWWGG	2 cut(s)	70, 130
ErhI	CCWWGG	2 cut(s)	70, 130
Esp3I	CGTCTC	1 cut(s)	354
FaeI	CATG	1 cut(s)	134
FaiI	YATR	7 cut(s)	102, 120, 132, 174, 195, 266, 542
FatI	CATG	1 cut(s)	130
Fnu4HI	GCNGC	5 cut(s)	114, 228, 434, 482, 485
FokI	GGATG	2 cut(s)	100, 189
Fsp4HI	GCNGC	5 cut(s)	114, 228, 434, 482, 485
FspBI	CTAG	2 cut(s)	147, 437
GluI	GCNGC	5 cut(s)	114, 228, 434, 482, 485
GsaI	CCCAGC	2 cut(s)	222, 277
HaeIII	GGCC	3 cut(s)	49, 413, 551
Hin1II	CATG	1 cut(s)	134
HinfI	GANTC	2 cut(s)	269, 464
HphI	GGTGA	1 cut(s)	26
Hpy166II	GTNNAC	1 cut(s)	521
Hpy188I	TCNGA	3 cut(s)	37, 295, 500
Hpy188III	TCNNGA	1 cut(s)	323
Hpy8I	GTNNAC	1 cut(s)	521
HpyCH4V	TGCA	6 cut(s)	100, 113, 230, 400, 484, 510
HpyF10VI	GCNNNNNNNGC	3 cut(s)	46, 424, 433
HpyF3I	CTNAG	1 cut(s)	513
Hsp92II	CATG	1 cut(s)	134
Kzo9I	GATC	2 cut(s)	16, 526
LmnI	GCTCC	2 cut(s)	37, 500
Lsp1109I	GCAGC	5 cut(s)	125, 214, 420, 468, 496
LweI	GCATC	1 cut(s)	468
MaeI	CTAG	2 cut(s)	147, 437
MalI	GATC	2 cut(s)	18, 528
MboI	GATC	2 cut(s)	16, 526
MboII	GAAGA	1 cut(s)	543
MluCI	AATT	2 cut(s)	63, 180
MnlI	CCTC	4 cut(s)	14, 541, 552, 562
MseI	TTAA	3 cut(s)	186, 249, 359
MspR9I	CCNGG	2 cut(s)	12, 46
MvaI	CCWGG	2 cut(s)	12, 46
MwoI	GCNNNNNNNGC	3 cut(s)	46, 424, 433
NcoI	CCATGG	1 cut(s)	130
NdeII	GATC	2 cut(s)	16, 526
NlaIII	CATG	1 cut(s)	134
NmeAIII	GCCGAG	1 cut(s)	439
PaeR7I	CTCGAG	1 cut(s)	566
PfeI	GAWTC	2 cut(s)	269, 464
PkrI	GCNGC	5 cut(s)	115, 229, 435, 483, 486
Psp6I	CCWGG	2 cut(s)	10, 44
PspFI	CCCAGC	2 cut(s)	218, 273
PspGI	CCWGG	2 cut(s)	10, 44
PspXI	VCTCGAGB	1 cut(s)	566
PstI	CTGCAG	1 cut(s)	486
PstNI	CAGNNNCTG	1 cut(s)	481
RsaI	GTAC	2 cut(s)	263, 573
RsaNI	GTAC	2 cut(s)	262, 572
SaqAI	TTAA	3 cut(s)	186, 249, 359
SatI	GCNGC	5 cut(s)	114, 228, 434, 482, 485
Sau3AI	GATC	2 cut(s)	16, 526
ScrFI	CCNGG	2 cut(s)	12, 46
SfaNI	GCATC	1 cut(s)	468
SfcI	CTRYAG	1 cut(s)	482
Sfr274I	CTCGAG	1 cut(s)	566
SlaI	CTCGAG	1 cut(s)	566
SmlI	CTYRAG	2 cut(s)	140, 566
SmoI	CTYRAG	2 cut(s)	140, 566
Sse9I	AATT	2 cut(s)	63, 180
SspI	AATATT	2 cut(s)	154, 356
SspMI	CTAG	2 cut(s)	147, 437
StyD4I	CCNGG	2 cut(s)	10, 44
StyI	CCWWGG	2 cut(s)	70, 130
TaqI	TCGA	3 cut(s)	19, 529, 567
TasI	AATT	2 cut(s)	63, 180
TatI	WGTACW	1 cut(s)	261
TfiI	GAWTC	2 cut(s)	269, 464
Tru1I	TTAA	3 cut(s)	186, 249, 359
Tru9I	TTAA	3 cut(s)	186, 249, 359
TscAI	CASTG	1 cut(s)	517
TseI	GCWGC	5 cut(s)	113, 227, 433, 481, 484
TspDTI	ATGAA	2 cut(s)	104, 191
TspRI	CASTG	1 cut(s)	517
XhoI	CTCGAG	1 cut(s)	566
XspI	CTAG	2 cut(s)	147, 437

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.