Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8392343.1

Orthogroup ID

OG0014882

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 777

Gene Structure 777 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8392343.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 695 bp

ccgtggtcggaggagggttcatagccaaaggcataaccttcgagaactcagccggaccaagcaagcaccaagccgtagccctccgctccggctcggacctctccgtcttctaccaatgcagcttcgtcggctaccaagacactctctacgtccactccctccgccagttctaccgtcaatgcgacgtctacggcaccgtcgacttcatcttcggcaacgccgccgtcgtcttccagaactgcaacctctacgcgcgaaagcccaacgagaaccagaagaacatcttcaccgcccagggccgcgaggaccccaaccagaacaccggaatctccatcctcaactgcaaggtcaccgccgcgtccgacctcattccggtcaagtccacgttcaagacgtatctgggccgtccgtggaaggagtactcccgggccgtttatctcaggtcgagtatcgacgacgtggtggaccccgccggctggttggagtggaatggcacgtttgcgctgagcacgttgtattatggagagtatttgaaccggggaaacgggtcggatacgagcgccagggtgacgtggccgggttatcgggtttttaatagctccacggaggcgagtcagttcacggttggggcgtttatacagggaaatgagtggctcaattctaccggagttccgaactttgctggtttaacataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004857 GO:0005575 GO:0005623 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0016787 GO:0016788 GO:0030234 GO:0030599 GO:0042742 GO:0043086 GO:0043207 GO:0044092 GO:0044464 GO:0046910 GO:0050790 GO:0050829 GO:0050896 GO:0051704 GO:0051707 GO:0052689 GO:0065007 GO:0065009 GO:0071944 GO:0098542 GO:0098772

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

PMEI Pectinesterase

Protein Analysis

230

Amino Acids

25.44

Weight (kDa)

7.78

Isoelectric Point (pI)

19.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014882)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02300 AT4G02320
fragaria_vesca	FvH4_2g25980
malus_domestica	MD11G1307200.v1.1
prunus_persica	Prupe.8G264100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0294341
rosa_laevigata	RLG00000011879
rosa_multiflora	Rmu_co8392343.1_g000001 Rmu_sc0005369.1_g000009
rosa_roxburghii	Rroxscaffold_7G00173460
rosa_rugosa	Rorug06G0243600
rosa_samantha	Rh6AG356200 Rh6BG362900 Rh6CG370200 Rh6DG356700
rosa_wichuraiana	Rw6G031040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	103
AatII	GACGTC	1 cut(s)	188
AccB1I	GGYRCC	1 cut(s)	193
AccBSI	CCGCTC	1 cut(s)	86
AccI	GTMKAC	2 cut(s)	188, 200
AccII	CGCG	4 cut(s)	253, 255, 302, 358
AciI	CCGC	8 cut(s)	84, 162, 221, 290, 300, 353, 356, 470
AcoI	YGGCCR	1 cut(s)	574
AcyI	GRCGYC	1 cut(s)	185
AfaI	GTAC	1 cut(s)	421
AfiI	CCNNNNNNNGG	2 cut(s)	372, 476
AgsI	TTSAA	2 cut(s)	390, 534
AjiI	CACGTC	2 cut(s)	459, 572
AjnI	CCWGG	2 cut(s)	293, 562
AluBI	AGCT	2 cut(s)	122, 599
AluI	AGCT	2 cut(s)	122, 599
Alw21I	GWGCWC	1 cut(s)	511
Ama87I	CYCGRG	1 cut(s)	425
AoxI	GGCC	4 cut(s)	297, 402, 428, 574
ApeKI	GCWGC	1 cut(s)	119
ArsI	GACNNNNNNTTYG	2 cut(s)	193, 225
Asp700I	GAANNNNTTC	1 cut(s)	283
AspLEI	GCGC	3 cut(s)	255, 504, 562
AspS9I	GGNCC	7 cut(s)	55, 96, 297, 306, 402, 428, 465
AsuC2I	CCSGG	4 cut(s)	426, 427, 538, 578
AsuHPI	GGTGA	3 cut(s)	279, 342, 579
AvaI	CYCGRG	1 cut(s)	425
AvaII	GGWCC	4 cut(s)	55, 96, 306, 465
BanI	GGYRCC	1 cut(s)	193
BbsI	GAAGAC	2 cut(s)	99, 222
Bbv12I	GWGCWC	1 cut(s)	511
BbvI	GCAGC	1 cut(s)	131
BccI	CCATC	1 cut(s)	340
BceAI	ACGGC	5 cut(s)	58, 207, 208, 389, 415
BcgI	CGANNNNNNTGC	4 cut(s)	21, 55, 108, 142
BciT130I	CCWGG	2 cut(s)	295, 564
BciVI	GTATCC	1 cut(s)	546
BcnI	CCSGG	4 cut(s)	426, 427, 538, 578
BfoI	RGCGCY	1 cut(s)	563
BfuI	GTATCC	1 cut(s)	546
BisI	GCNGC	4 cut(s)	120, 221, 300, 356
BlpI	GCTNAGC	1 cut(s)	505
BlsI	GCNGC	4 cut(s)	121, 222, 301, 357
BmcAI	AGTACT	1 cut(s)	421
Bme1390I	CCNGG	6 cut(s)	295, 426, 427, 538, 564, 578
Bme18I	GGWCC	4 cut(s)	55, 96, 306, 465
BmeT110I	CYCGRG	1 cut(s)	425
BmgBI	CACGTC	2 cut(s)	459, 572
BmgT120I	GGNCC	7 cut(s)	55, 96, 297, 306, 402, 428, 465
BmiI	GGNNCC	3 cut(s)	195, 308, 467
BmrFI	CCNGG	6 cut(s)	295, 426, 427, 538, 564, 578
BpiI	GAAGAC	2 cut(s)	99, 222
Bpu1102I	GCTNAGC	1 cut(s)	505
BpuMI	CCSGG	4 cut(s)	426, 427, 538, 578
BsaHI	GRCGYC	1 cut(s)	185
BsaJI	CCNNGG	8 cut(s)	2, 293, 294, 409, 425, 537, 563, 602
BsaWI	WCCGGW	3 cut(s)	322, 372, 664
BsaXI	ACNNNNNCTCC	2 cut(s)	139, 169
Bsc4I	CCNNNNNNNGG	2 cut(s)	372, 476
Bse118I	RCCGGY	1 cut(s)	472
Bse1I	ACTGG	1 cut(s)	165
BseBI	CCWGG	2 cut(s)	295, 564
BseDI	CCNNGG	8 cut(s)	2, 293, 294, 409, 425, 537, 563, 602
BseGI	GGATG	1 cut(s)	332
BseLI	CCNNNNNNNGG	2 cut(s)	372, 476
BseMII	CTCAG	3 cut(s)	62, 453, 496
BseNI	ACTGG	1 cut(s)	165
BseRI	GAGGAG	1 cut(s)	26
BseXI	GCAGC	1 cut(s)	131
Bsh1236I	CGCG	4 cut(s)	253, 255, 302, 358
BshFI	GGCC	4 cut(s)	299, 404, 430, 576
BshNI	GGYRCC	1 cut(s)	193
BsiHKAI	GWGCWC	1 cut(s)	511
BsiHKCI	CYCGRG	1 cut(s)	425
BsiSI	CCGG	9 cut(s)	53, 89, 323, 373, 426, 473, 537, 577, 665
BslI	CCNNNNNNNGG	2 cut(s)	372, 476
BsnI	GGCC	4 cut(s)	299, 404, 430, 576
BsoBI	CYCGRG	1 cut(s)	425
Bsp1286I	GDGCHC	1 cut(s)	511
Bsp1720I	GCTNAGC	1 cut(s)	505
BspACI	CCGC	8 cut(s)	84, 162, 221, 290, 300, 353, 356, 470
BspANI	GGCC	4 cut(s)	299, 404, 430, 576
BspCNI	CTCAG	3 cut(s)	61, 452, 497
BspFNI	CGCG	4 cut(s)	253, 255, 302, 358
BspLI	GGNNCC	3 cut(s)	195, 308, 467
BspT107I	GGYRCC	1 cut(s)	193
BsrBI	CCGCTC	1 cut(s)	86
BsrFI	RCCGGY	1 cut(s)	472
BsrI	ACTGG	1 cut(s)	165
BssAI	RCCGGY	1 cut(s)	472
BssECI	CCNNGG	8 cut(s)	2, 293, 294, 409, 425, 537, 563, 602
BssNI	GRCGYC	1 cut(s)	185
Bst2UI	CCWGG	2 cut(s)	295, 564
Bst4CI	ACNGT	3 cut(s)	175, 198, 624
BstACI	GRCGYC	1 cut(s)	185
BstC8I	GCNNGC	2 cut(s)	64, 474
BstDEI	CTNAG	3 cut(s)	48, 439, 505
BstDSI	CCRYGG	3 cut(s)	2, 409, 602
BstEII	GGTNACC	1 cut(s)	348
BstF5I	GGATG	1 cut(s)	332
BstFNI	CGCG	4 cut(s)	253, 255, 302, 358
BstH2I	RGCGCY	1 cut(s)	563
BstHHI	GCGC	3 cut(s)	255, 504, 562
BstMWI	GCNNNNNNNGC	1 cut(s)	128
BstNI	CCWGG	2 cut(s)	295, 564
BstPI	GGTNACC	1 cut(s)	348
BstSCI	CCNGG	6 cut(s)	293, 424, 425, 536, 562, 576
BstUI	CGCG	4 cut(s)	253, 255, 302, 358
BstV1I	GCAGC	1 cut(s)	131
BstV2I	GAAGAC	2 cut(s)	99, 222
BsuI	GTATCC	1 cut(s)	546
BsuRI	GGCC	4 cut(s)	299, 404, 430, 576
BtgI	CCRYGG	3 cut(s)	2, 409, 602
BtrI	CACGTC	2 cut(s)	459, 572
BtsCI	GGATG	1 cut(s)	332
Cac8I	GCNNGC	2 cut(s)	64, 474
CfoI	GCGC	3 cut(s)	255, 504, 562
Cfr10I	RCCGGY	1 cut(s)	472
Cfr13I	GGNCC	7 cut(s)	55, 96, 297, 306, 402, 428, 465
Cfr9I	CCCGGG	1 cut(s)	425
CseI	GACGC	1 cut(s)	347
Csp6I	GTAC	1 cut(s)	420
CviQI	GTAC	1 cut(s)	420
DdeI	CTNAG	3 cut(s)	48, 439, 505
DrdI	GACNNNNNNGTC	1 cut(s)	103
DseDI	GACNNNNNNGTC	1 cut(s)	103
EaeI	YGGCCR	1 cut(s)	574
EciI	GGCGGA	1 cut(s)	151
Eco47I	GGWCC	4 cut(s)	55, 96, 306, 465
Eco88I	CYCGRG	1 cut(s)	425
Eco91I	GGTNACC	1 cut(s)	348
EcoO109I	RGGNCCY	1 cut(s)	306
EcoO65I	GGTNACC	1 cut(s)	348
EcoRII	CCWGG	2 cut(s)	293, 562
FaiI	YATR	5 cut(s)	22, 34, 521, 637, 693
FalI	AAGNNNNNCTT	2 cut(s)	268, 300
FauI	CCCGC	1 cut(s)	477
FblI	GTMKAC	2 cut(s)	188, 200
Fnu4HI	GCNGC	4 cut(s)	120, 221, 300, 356
FokI	GGATG	1 cut(s)	319
Fsp4HI	GCNGC	4 cut(s)	120, 221, 300, 356
GlaI	GCGC	3 cut(s)	254, 503, 561
GluI	GCNGC	4 cut(s)	120, 221, 300, 356
HaeII	RGCGCY	1 cut(s)	563
HaeIII	GGCC	4 cut(s)	299, 404, 430, 576
HapII	CCGG	9 cut(s)	53, 89, 323, 373, 426, 473, 537, 577, 665
HgaI	GACGC	1 cut(s)	347
HhaI	GCGC	3 cut(s)	255, 504, 562
Hin1I	GRCGYC	1 cut(s)	185
Hin6I	GCGC	3 cut(s)	253, 502, 560
HinP1I	GCGC	3 cut(s)	253, 502, 560
HincII	GTYRAC	1 cut(s)	201
HindII	GTYRAC	1 cut(s)	201
HinfI	GANTC	2 cut(s)	326, 612
HpaII	CCGG	9 cut(s)	53, 89, 323, 373, 426, 473, 537, 577, 665
HphI	GGTGA	3 cut(s)	279, 342, 579
Hpy166II	GTNNAC	6 cut(s)	153, 189, 201, 383, 465, 620
Hpy188I	TCNGA	5 cut(s)	10, 96, 363, 552, 674
Hpy188III	TCNNGA	3 cut(s)	42, 234, 390
Hpy8I	GTNNAC	6 cut(s)	153, 189, 201, 383, 465, 620
Hpy99I	CGWCG	6 cut(s)	130, 187, 202, 229, 457, 460
HpyAV	CCTTC	2 cut(s)	48, 408
HpyCH4III	ACNGT	3 cut(s)	175, 198, 624
HpyCH4IV	ACGT	8 cut(s)	149, 185, 385, 394, 458, 496, 511, 571
HpyCH4V	TGCA	3 cut(s)	119, 242, 344
HpyF10VI	GCNNNNNNNGC	1 cut(s)	128
HpyF3I	CTNAG	3 cut(s)	48, 439, 505
HpySE526I	ACGT	8 cut(s)	149, 185, 385, 394, 458, 496, 511, 571
Hsp92I	GRCGYC	1 cut(s)	185
HspAI	GCGC	3 cut(s)	253, 502, 560
KroI	GCCGGC	1 cut(s)	472
KroNI	GCCGGC	1 cut(s)	474
LmnI	GCTCC	2 cut(s)	91, 604
Lsp1109I	GCAGC	1 cut(s)	131
MaeII	ACGT	8 cut(s)	149, 185, 385, 394, 458, 496, 511, 571
MaeIII	GTNAC	2 cut(s)	348, 567
MbiI	CCGCTC	1 cut(s)	86
MboII	GAAGA	5 cut(s)	99, 201, 222, 276, 288
MhlI	GDGCHC	1 cut(s)	511
MluCI	AATT	1 cut(s)	657
MlyI	GAGTC	1 cut(s)	621
MmeI	TCCRAC	3 cut(s)	386, 461, 530
MroNI	GCCGGC	1 cut(s)	472
MroXI	GAANNNNTTC	1 cut(s)	283
MseI	TTAA	2 cut(s)	593, 688
MspI	CCGG	9 cut(s)	53, 89, 323, 373, 426, 473, 537, 577, 665
MspR9I	CCNGG	6 cut(s)	295, 426, 427, 538, 564, 578
MvaI	CCWGG	2 cut(s)	295, 564
MvnI	CGCG	4 cut(s)	253, 255, 302, 358
MwoI	GCNNNNNNNGC	1 cut(s)	128
NaeI	GCCGGC	1 cut(s)	474
NciI	CCSGG	4 cut(s)	426, 427, 538, 578
NgoMIV	GCCGGC	1 cut(s)	472
NlaIV	GGNNCC	3 cut(s)	195, 308, 467
NmuCI	GTSAC	2 cut(s)	348, 567
PasI	CCCWGGG	1 cut(s)	294
PcsI	WCGNNNNNNNCGW	4 cut(s)	197, 224, 391, 628
PdiI	GCCGGC	1 cut(s)	474
PdmI	GAANNNNTTC	1 cut(s)	283
PfeI	GAWTC	1 cut(s)	326
PkrI	GCNGC	4 cut(s)	121, 222, 301, 357
PleI	GAGTC	1 cut(s)	620
PpsI	GAGTC	1 cut(s)	620
PpuMI	RGGWCCY	1 cut(s)	306
Psp5II	RGGWCCY	1 cut(s)	306
Psp6I	CCWGG	2 cut(s)	293, 562
PspEI	GGTNACC	1 cut(s)	348
PspGI	CCWGG	2 cut(s)	293, 562
PspN4I	GGNNCC	3 cut(s)	195, 308, 467
PspPI	GGNCC	7 cut(s)	55, 96, 297, 306, 402, 428, 465
PspPPI	RGGWCCY	1 cut(s)	306
RsaI	GTAC	1 cut(s)	421
RsaNI	GTAC	1 cut(s)	420
SalI	GTCGAC	1 cut(s)	199
SaqAI	TTAA	2 cut(s)	593, 688
SatI	GCNGC	4 cut(s)	120, 221, 300, 356
Sau96I	GGNCC	7 cut(s)	55, 96, 297, 306, 402, 428, 465
ScaI	AGTACT	1 cut(s)	421
SchI	GAGTC	1 cut(s)	621
ScrFI	CCNGG	6 cut(s)	295, 426, 427, 538, 564, 578
SduI	GDGCHC	1 cut(s)	511
SinI	GGWCC	4 cut(s)	55, 96, 306, 465
SmaI	CCCGGG	1 cut(s)	427
Sse9I	AATT	1 cut(s)	657
SsiI	CCGC	8 cut(s)	84, 162, 221, 290, 300, 353, 356, 470
StyD4I	CCNGG	6 cut(s)	293, 424, 425, 536, 562, 576
TaaI	ACNGT	3 cut(s)	175, 198, 624
TaiI	ACGT	8 cut(s)	152, 188, 388, 397, 461, 499, 514, 574
TaqI	TCGA	4 cut(s)	41, 200, 445, 452
TasI	AATT	1 cut(s)	657
TatI	WGTACW	1 cut(s)	419
TauI	GCSGC	3 cut(s)	223, 302, 358
TfiI	GAWTC	1 cut(s)	326
Tru1I	TTAA	2 cut(s)	593, 688
Tru9I	TTAA	2 cut(s)	593, 688
TseFI	GTSAC	2 cut(s)	348, 567
TseI	GCWGC	1 cut(s)	119
Tsp45I	GTSAC	2 cut(s)	348, 567
TspDTI	ATGAA	2 cut(s)	9, 195
TspGWI	ACGGA	3 cut(s)	93, 398, 619
TspMI	CCCGGG	1 cut(s)	425
VpaK11BI	GGWCC	4 cut(s)	55, 96, 306, 465
XmaI	CCCGGG	1 cut(s)	425
XmiI	GTMKAC	2 cut(s)	188, 200
XmnI	GAANNNNTTC	1 cut(s)	283
ZraI	GACGTC	1 cut(s)	186
ZrmI	AGTACT	1 cut(s)	421

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.