Rmu_co8413095.1_g000001

Ferric reduction oxidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8413095.1
OG0017311
Physical Location & Seq
Forward (+)
1 .. 1135
1135 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8413095.1_g000001.1.cds

Sequence Viewer

Length: 830 bp
gaggcagtgggatctcaccattcttagctatcttgagtgatattctccatcgaattaagatgaacaaaccttgtctaccgcaacatgtattgcttgtttgggctatcaaaacgtcaaatgagctctctcttctttccacagttgacatggggtctatggatttttctgatagattggatattgaaatccaggcctatgtcacacgtgaatcagaatgtccagtggaagatggtagattttacaacgctcctagttcttctgttttctccgtctccaagggagcaaccatgtcagttttgactggcacaggaaacaagatatgggccggaacttatgttattgcatctacaattgggtttgttattgttttgagcttgttagacgtattctacataaacccttacagcatagacgcttggtggtatttagggcttctttttgtgatatgtatggttgcaagtgttcttatatttggaggtctcacaattggattatggcatctttgggaaagaaaaacctcattccaagagagtttggaaaatgggaatactgaaatagtgcagagtaatggaagatcaacagacacaaatgaataccagaaaactctgatcagtgcagccacagttcggtatggccgcagaccagacttctcagaaattttcggatctttagcacaacattcggctcaagttaatgttggtgtcttcgtgtgtggtcccacaactctacagtccagtgttgctaaagaatgtaggtcacagaatctaggaagaagaagaaaaggcaacagcccaatattccattacaacagccatagttttgatttgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAD_binding_8 Ferric_reduct NAD_binding_6

Protein Analysis

275

Amino Acids

30.45

Weight (kDa)

6.65

Isoelectric Point (pI)

50.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017311)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g27140
rosa_chinensis RchiOBHm_Chr7g0218141
rosa_laevigata RLG00000002396
rosa_multiflora Rmu_co8413095.1_g000001 Rmu_sc0003627.1_g000011 Rmu_sc0031732.1_g000001
rosa_roxburghii Rroxscaffold_3G00241270
rosa_rugosa Rorug07G0174500
rosa_samantha Rh7AG317000 Rh7BG308100 Rh7CG333800 Rh7DG315800
rosa_wichuraiana Rw7G026820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 75
AciI CCGC 2 cut(s) 79, 636
AclWI GGATC 2 cut(s) 19, 672
AcoI YGGCCR 1 cut(s) 633
AcsI RAATTY 1 cut(s) 656
AcvI CACGTG 1 cut(s) 205
AfiI CCNNNNNNNGG 1 cut(s) 626
AflIII ACRYGT 2 cut(s) 84, 202
AgsI TTSAA 1 cut(s) 184
AhdI GACNNNNNGTC 1 cut(s) 150
AjnI CCWGG 1 cut(s) 188
AluBI AGCT 3 cut(s) 28, 123, 374
AluI AGCT 3 cut(s) 28, 123, 374
Alw21I GWGCWC 1 cut(s) 125
Alw26I GTCTC 2 cut(s) 276, 484
AlwI GGATC 2 cut(s) 19, 672
AoxI GGCC 3 cut(s) 191, 323, 633
ApeKI GCWGC 1 cut(s) 616
ApoI RAATTY 1 cut(s) 656
AspS9I GGNCC 2 cut(s) 323, 715
AsuHPI GGTGA 1 cut(s) 8
AvaII GGWCC 1 cut(s) 715
BanII GRGCYC 1 cut(s) 125
BbrPI CACGTG 1 cut(s) 205
BbsI GAAGAC 1 cut(s) 696
Bbv12I GWGCWC 1 cut(s) 125
BbvI GCAGC 1 cut(s) 628
BccI CCATC 2 cut(s) 56, 223
BcgI CGANNNNNNTGC 2 cut(s) 662, 696
BciT130I CCWGG 1 cut(s) 190
BclI TGATCA 1 cut(s) 608
BcoDI GTCTC 2 cut(s) 276, 484
BfaI CTAG 2 cut(s) 251, 766
BfmI CTRYAG 1 cut(s) 727
BisI GCNGC 2 cut(s) 617, 636
BlsI GCNGC 2 cut(s) 618, 637
Bme1390I CCNGG 1 cut(s) 190
Bme18I GGWCC 1 cut(s) 715
BmeRI GACNNNNNGTC 1 cut(s) 150
BmgT120I GGNCC 2 cut(s) 323, 715
BmiI GGNNCC 1 cut(s) 717
BmrFI CCNGG 1 cut(s) 190
BmsI GCATC 2 cut(s) 352, 507
BpiI GAAGAC 1 cut(s) 696
BpuEI CTTGAG 2 cut(s) 54, 671
BsaAI YACGTR 1 cut(s) 205
BsaI GGTCTC 1 cut(s) 484
BsaJI CCNNGG 1 cut(s) 275
Bsc4I CCNNNNNNNGG 1 cut(s) 626
Bse1I ACTGG 3 cut(s) 220, 306, 734
BseBI CCWGG 1 cut(s) 190
BseDI CCNNGG 1 cut(s) 275
BseLI CCNNNNNNNGG 1 cut(s) 626
BseMII CTCAG 1 cut(s) 665
BseNI ACTGG 3 cut(s) 220, 306, 734
BseXI GCAGC 1 cut(s) 628
BsgI GTGCAG 2 cut(s) 580, 635
BshFI GGCC 3 cut(s) 193, 325, 635
BsiHKAI GWGCWC 1 cut(s) 125
BsiSI CCGG 1 cut(s) 326
BslFI GGGAC 1 cut(s) 701
BslI CCNNNNNNNGG 1 cut(s) 626
BsmAI GTCTC 2 cut(s) 276, 484
BsmBI CGTCTC 1 cut(s) 276
BsmFI GGGAC 1 cut(s) 701
BsnI GGCC 3 cut(s) 193, 325, 635
Bso31I GGTCTC 1 cut(s) 484
Bsp1286I GDGCHC 1 cut(s) 125
Bsp143I GATC 4 cut(s) 11, 574, 608, 664
BspACI CCGC 2 cut(s) 79, 636
BspANI GGCC 3 cut(s) 193, 325, 635
BspCNI CTCAG 1 cut(s) 664
BspLI GGNNCC 1 cut(s) 717
BspPI GGATC 2 cut(s) 19, 672
BspTNI GGTCTC 1 cut(s) 484
BsrI ACTGG 3 cut(s) 220, 306, 734
BssECI CCNNGG 1 cut(s) 275
BssMI GATC 4 cut(s) 11, 574, 608, 664
BssT1I CCWWGG 1 cut(s) 275
Bst2UI CCWGG 1 cut(s) 190
Bst4CI ACNGT 3 cut(s) 141, 624, 731
Bst6I CTCTTC 1 cut(s) 134
BstBAI YACGTR 1 cut(s) 205
BstDEI CTNAG 2 cut(s) 24, 651
BstKTI GATC 4 cut(s) 14, 577, 611, 667
BstMAI GTCTC 2 cut(s) 276, 484
BstMBI GATC 4 cut(s) 11, 574, 608, 664
BstNI CCWGG 1 cut(s) 190
BstNSI RCATGY 1 cut(s) 88
BstSCI CCNGG 1 cut(s) 188
BstSFI CTRYAG 1 cut(s) 727
BstV1I GCAGC 1 cut(s) 628
BstV2I GAAGAC 1 cut(s) 696
BstX2I RGATCY 2 cut(s) 11, 664
BstYI RGATCY 2 cut(s) 11, 664
BsuRI GGCC 3 cut(s) 193, 325, 635
BtsI GCAGTG 1 cut(s) 12
BtsIMutI CAGTG 4 cut(s) 12, 227, 618, 741
Cfr13I GGNCC 2 cut(s) 323, 715
CseI GACGC 1 cut(s) 421
CviAII CATG 3 cut(s) 85, 147, 288
DdeI CTNAG 2 cut(s) 24, 651
DpnI GATC 4 cut(s) 13, 576, 610, 666
DpnII GATC 4 cut(s) 11, 574, 608, 664
DriI GACNNNNNGTC 1 cut(s) 150
EaeI YGGCCR 1 cut(s) 633
Eam1104I CTCTTC 1 cut(s) 134
Eam1105I GACNNNNNGTC 1 cut(s) 150
EarI CTCTTC 1 cut(s) 134
Ecl136II GAGCTC 1 cut(s) 123
Eco130I CCWWGG 1 cut(s) 275
Eco147I AGGCCT 1 cut(s) 193
Eco24I GRGCYC 1 cut(s) 125
Eco31I GGTCTC 1 cut(s) 484
Eco47I GGWCC 1 cut(s) 715
Eco53kI GAGCTC 1 cut(s) 123
Eco72I CACGTG 1 cut(s) 205
EcoICRI GAGCTC 1 cut(s) 123
EcoRII CCWGG 1 cut(s) 188
EcoT14I CCWWGG 1 cut(s) 275
EcoT38I GRGCYC 1 cut(s) 125
ErhI CCWWGG 1 cut(s) 275
Esp3I CGTCTC 1 cut(s) 276
FaeI CATG 3 cut(s) 88, 150, 291
FaqI GGGAC 1 cut(s) 701
FatI CATG 3 cut(s) 84, 146, 287
FbaI TGATCA 1 cut(s) 608
FblI GTMKAC 1 cut(s) 75
Fnu4HI GCNGC 2 cut(s) 617, 636
FriOI GRGCYC 1 cut(s) 125
Fsp4HI GCNGC 2 cut(s) 617, 636
FspBI CTAG 2 cut(s) 251, 766
GluI GCNGC 2 cut(s) 617, 636
HaeIII GGCC 3 cut(s) 193, 325, 635
HapII CCGG 1 cut(s) 326
HgaI GACGC 1 cut(s) 421
Hin1II CATG 3 cut(s) 88, 150, 291
HincII GTYRAC 1 cut(s) 144
HindII GTYRAC 1 cut(s) 144
HinfI GANTC 2 cut(s) 208, 762
HpaII CCGG 1 cut(s) 326
HphI GGTGA 1 cut(s) 8
Hpy166II GTNNAC 2 cut(s) 76, 144
Hpy188I TCNGA 5 cut(s) 168, 213, 608, 654, 664
Hpy188III TCNNGA 1 cut(s) 33
Hpy8I GTNNAC 2 cut(s) 76, 144
HpyCH4III ACNGT 3 cut(s) 141, 624, 731
HpyCH4IV ACGT 3 cut(s) 112, 204, 383
HpyCH4V TGCA 4 cut(s) 343, 457, 561, 616
HpyF3I CTNAG 2 cut(s) 24, 651
HpySE526I ACGT 3 cut(s) 112, 204, 383
Hsp92II CATG 3 cut(s) 88, 150, 291
Ksp22I TGATCA 1 cut(s) 608
Kzo9I GATC 4 cut(s) 11, 574, 608, 664
LmnI GCTCC 2 cut(s) 252, 280
LpnPI CCDG 9 cut(s) 175, 202, 233, 287, 293, 339, 610, 656, 747
Lsp1109I GCAGC 1 cut(s) 628
LweI GCATC 2 cut(s) 352, 507
MaeI CTAG 2 cut(s) 251, 766
MaeII ACGT 3 cut(s) 112, 204, 383
MaeIII GTNAC 2 cut(s) 198, 755
MalI GATC 4 cut(s) 13, 576, 610, 666
MboI GATC 4 cut(s) 11, 574, 608, 664
MboII GAAGA 8 cut(s) 121, 238, 248, 584, 696, 782, 785, 788
MfeI CAATTG 2 cut(s) 350, 485
MflI RGATCY 2 cut(s) 11, 664
MhlI GDGCHC 1 cut(s) 125
MluCI AATT 4 cut(s) 53, 350, 485, 656
MnlI CCTC 2 cut(s) 469, 528
MseI TTAA 2 cut(s) 56, 692
MspI CCGG 1 cut(s) 326
MspR9I CCNGG 1 cut(s) 190
MunI CAATTG 2 cut(s) 350, 485
MvaI CCWGG 1 cut(s) 190
NdeII GATC 4 cut(s) 11, 574, 608, 664
NlaIII CATG 3 cut(s) 88, 150, 291
NlaIV GGNNCC 1 cut(s) 717
NmuCI GTSAC 2 cut(s) 198, 755
NspI RCATGY 1 cut(s) 88
PceI AGGCCT 1 cut(s) 193
PciI ACATGT 1 cut(s) 84
PfeI GAWTC 2 cut(s) 208, 762
PkrI GCNGC 2 cut(s) 618, 637
PmaCI CACGTG 1 cut(s) 205
PmlI CACGTG 1 cut(s) 205
Ppu21I YACGTR 1 cut(s) 205
PscI ACATGT 1 cut(s) 84
Psp124BI GAGCTC 1 cut(s) 125
Psp6I CCWGG 1 cut(s) 188
PspCI CACGTG 1 cut(s) 205
PspGI CCWGG 1 cut(s) 188
PspN4I GGNNCC 1 cut(s) 717
PspPI GGNCC 2 cut(s) 323, 715
PsuI RGATCY 2 cut(s) 11, 664
SacI GAGCTC 1 cut(s) 125
SaqAI TTAA 2 cut(s) 56, 692
SatI GCNGC 2 cut(s) 617, 636
Sau3AI GATC 4 cut(s) 11, 574, 608, 664
Sau96I GGNCC 2 cut(s) 323, 715
ScrFI CCNGG 1 cut(s) 190
SduI GDGCHC 1 cut(s) 125
SfaNI GCATC 2 cut(s) 352, 507
SfcI CTRYAG 1 cut(s) 727
SinI GGWCC 1 cut(s) 715
SmlI CTYRAG 2 cut(s) 33, 686
SmoI CTYRAG 2 cut(s) 33, 686
Sse9I AATT 4 cut(s) 53, 350, 485, 656
SseBI AGGCCT 1 cut(s) 193
SsiI CCGC 2 cut(s) 79, 636
SspI AATATT 1 cut(s) 797
SspMI CTAG 2 cut(s) 251, 766
SstI GAGCTC 1 cut(s) 125
StuI AGGCCT 1 cut(s) 193
StyD4I CCNGG 1 cut(s) 188
StyI CCWWGG 1 cut(s) 275
TaaI ACNGT 3 cut(s) 141, 624, 731
TaiI ACGT 3 cut(s) 115, 207, 386
TaqI TCGA 1 cut(s) 51
TasI AATT 4 cut(s) 53, 350, 485, 656
TauI GCSGC 1 cut(s) 638
TfiI GAWTC 2 cut(s) 208, 762
Tru1I TTAA 2 cut(s) 56, 692
Tru9I TTAA 2 cut(s) 56, 692
TscAI CASTG 4 cut(s) 12, 227, 618, 741
TseFI GTSAC 2 cut(s) 198, 755
TseI GCWGC 1 cut(s) 616
Tsp45I GTSAC 2 cut(s) 198, 755
TspDTI ATGAA 2 cut(s) 76, 605
TspGWI ACGGA 1 cut(s) 258
TspRI CASTG 4 cut(s) 12, 227, 618, 741
VpaK11BI GGWCC 1 cut(s) 715
XapI RAATTY 1 cut(s) 656
XceI RCATGY 1 cut(s) 88
XcmI CCANNNNNNNNNTGG 1 cut(s) 144
XmiI GTMKAC 1 cut(s) 75
XspI CTAG 2 cut(s) 251, 766
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.