Rmu_co8422927.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8422927.1
OG0016873
Physical Location & Seq
Reverse (-)
688 .. 1427
740 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8422927.1_g000001.1.cds

Sequence Viewer

Length: 640 bp
agcagagaagcagcagcagcagacatggaaaatcaccgtccaagccaaaaccaagaagagcttcaacttcaaattcaagtcgacccaaatcgtccccacttggaagtttcatcgattctctcttctgatcaagctccgcaaaattatcctcagagtgaaactgaattcagaatccacagcatcatcagtttcgagaaaaagaaaagcaaccctcaaatccaagctcctcagaattttcaagaaaattggaattccacgcaccaagaatctagaccatactgtccatagccccaaatcccaatcgcctctacttagactgaaacaacacgtttacaaggaaccaatttctgttgctacgttgtgcactggaattcttgtgtttctagctcagtcgatcttcagcattgttcaaaagggtttcgttgtttatagtttggctaccttgctcttcttcttttctctagtaaccggtaaatacagtgtgggaagaattctcaagtttctggtgattctaacgcttgcggcgtctaccagttcatcagtgctcgacttcaataattatattaagttttgtgggaggtatgtctcggactacattgggaaggcttccaactatgctgctcttgtttttatgaattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

212

Amino Acids

24.15

Weight (kDa)

10.62

Isoelectric Point (pI)

27.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016873)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g09930
prunus_persica Prupe.6G293200_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0460521
rosa_laevigata RLG00000024997
rosa_multiflora Rmu_co8422927.1_g000001 Rmu_sc0004267.1_g000003 Rmu_sc0006046.1_g000003
rosa_roxburghii Rroxscaffold_6G00419410
rosa_rugosa Rorug03G0043300
rosa_samantha Rh3AG101400 Rh3BG105400 Rh3CG107200 Rh3DG106800
rosa_wichuraiana Rw3G008630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 279
AccI GTMKAC 2 cut(s) 81, 528
AciI CCGC 2 cut(s) 137, 522
AcsI RAATTY 6 cut(s) 72, 164, 232, 250, 370, 490
AcuI CTGAAG 1 cut(s) 383
AcyI GRCGYC 1 cut(s) 525
AflIII ACRYGT 1 cut(s) 326
AgeI ACCGGT 1 cut(s) 468
AgsI TTSAA 6 cut(s) 65, 71, 77, 239, 411, 554
AjuI GAANNNNNNNTTGG 2 cut(s) 45, 77
AluBI AGCT 4 cut(s) 61, 134, 224, 387
AluI AGCT 4 cut(s) 61, 134, 224, 387
Alw21I GWGCWC 2 cut(s) 366, 547
Alw26I GTCTC 1 cut(s) 590
Alw44I GTGCAC 1 cut(s) 362
ApaLI GTGCAC 1 cut(s) 362
ApeKI GCWGC 4 cut(s) 11, 14, 17, 618
ApoI RAATTY 6 cut(s) 72, 164, 232, 250, 370, 490
AsiGI ACCGGT 1 cut(s) 468
Asp700I GAANNNNTTC 1 cut(s) 60
AsuHPI GGTGA 2 cut(s) 26, 518
BaeGI GKGCMC 1 cut(s) 366
Bbv12I GWGCWC 2 cut(s) 366, 547
BbvI GCAGC 4 cut(s) 23, 26, 29, 605
BclI TGATCA 1 cut(s) 127
BcoDI GTCTC 1 cut(s) 590
BfaI CTAG 3 cut(s) 270, 384, 462
BisI GCNGC 5 cut(s) 12, 15, 18, 523, 619
BlsI GCNGC 5 cut(s) 13, 16, 19, 524, 620
BmiI GGNNCC 1 cut(s) 340
BmsI GCATC 1 cut(s) 189
BpuEI CTTGAG 1 cut(s) 480
Bsa29I ATCGAT 1 cut(s) 113
BsaHI GRCGYC 1 cut(s) 525
BsaWI WCCGGW 1 cut(s) 468
Bse118I RCCGGY 1 cut(s) 468
Bse1I ACTGG 2 cut(s) 371, 532
BseCI ATCGAT 1 cut(s) 113
BseMII CTCAG 3 cut(s) 164, 242, 402
BseNI ACTGG 2 cut(s) 371, 532
BseRI GAGGAG 1 cut(s) 216
BseSI GKGCMC 1 cut(s) 366
BseXI GCAGC 4 cut(s) 23, 26, 29, 605
BshTI ACCGGT 1 cut(s) 468
BshVI ATCGAT 1 cut(s) 113
BsiHKAI GWGCWC 2 cut(s) 366, 547
BsiSI CCGG 1 cut(s) 469
BslFI GGGAC 1 cut(s) 78
BsmAI GTCTC 1 cut(s) 590
BsmFI GGGAC 1 cut(s) 78
Bsp1286I GDGCHC 2 cut(s) 366, 547
Bsp143I GATC 2 cut(s) 127, 394
BspACI CCGC 2 cut(s) 137, 522
BspCNI CTCAG 3 cut(s) 163, 241, 401
BspDI ATCGAT 1 cut(s) 113
BspLI GGNNCC 1 cut(s) 340
BspQI GCTCTTC 2 cut(s) 51, 453
BsrFI RCCGGY 1 cut(s) 468
BsrI ACTGG 2 cut(s) 371, 532
BssAI RCCGGY 1 cut(s) 468
BssMI GATC 2 cut(s) 127, 394
BssNI GRCGYC 1 cut(s) 525
Bst4CI ACNGT 3 cut(s) 38, 281, 480
Bst6I CTCTTC 3 cut(s) 51, 127, 453
BstACI GRCGYC 1 cut(s) 525
BstC8I GCNNGC 1 cut(s) 520
BstDEI CTNAG 4 cut(s) 150, 228, 312, 388
BstKTI GATC 2 cut(s) 130, 397
BstMAI GTCTC 1 cut(s) 590
BstMBI GATC 2 cut(s) 127, 394
BstMWI GCNNNNNNNGC 1 cut(s) 17
BstSLI GKGCMC 1 cut(s) 366
BstV1I GCAGC 4 cut(s) 23, 26, 29, 605
Bsu15I ATCGAT 1 cut(s) 113
BsuTUI ATCGAT 1 cut(s) 113
BtsIMutI CAGTG 3 cut(s) 364, 485, 547
Cac8I GCNNGC 1 cut(s) 520
Cfr10I RCCGGY 1 cut(s) 468
ClaI ATCGAT 1 cut(s) 113
CseI GACGC 1 cut(s) 514
CspAI ACCGGT 1 cut(s) 468
CviAII CATG 1 cut(s) 25
CviJI RGCY 8 cut(s) 45, 61, 134, 224, 289, 387, 438, 606
CviKI_1 RGCY 8 cut(s) 45, 61, 134, 224, 289, 387, 438, 606
DdeI CTNAG 4 cut(s) 150, 228, 312, 388
DpnI GATC 2 cut(s) 129, 396
DpnII GATC 2 cut(s) 127, 394
DrdI GACNNNNNNGTC 1 cut(s) 279
DseDI GACNNNNNNGTC 1 cut(s) 279
Eam1104I CTCTTC 3 cut(s) 51, 127, 453
EarI CTCTTC 3 cut(s) 51, 127, 453
Eco57I CTGAAG 1 cut(s) 383
EcoRI GAATTC 4 cut(s) 164, 250, 370, 490
FaeI CATG 1 cut(s) 28
FaiI YATR 8 cut(s) 26, 277, 286, 430, 562, 583, 616, 633
FalI AAGNNNNNCTT 2 cut(s) 45, 77
FaqI GGGAC 1 cut(s) 78
FatI CATG 1 cut(s) 24
FbaI TGATCA 1 cut(s) 127
FblI GTMKAC 2 cut(s) 81, 528
Fnu4HI GCNGC 5 cut(s) 12, 15, 18, 523, 619
Fsp4HI GCNGC 5 cut(s) 12, 15, 18, 523, 619
FspBI CTAG 3 cut(s) 270, 384, 462
GluI GCNGC 5 cut(s) 12, 15, 18, 523, 619
HapII CCGG 1 cut(s) 469
HgaI GACGC 1 cut(s) 514
Hin1I GRCGYC 1 cut(s) 525
Hin1II CATG 1 cut(s) 28
HincII GTYRAC 1 cut(s) 82
HindII GTYRAC 1 cut(s) 82
HinfI GANTC 4 cut(s) 115, 171, 266, 509
HpaII CCGG 1 cut(s) 469
HphI GGTGA 2 cut(s) 26, 518
Hpy166II GTNNAC 4 cut(s) 82, 332, 364, 529
Hpy188I TCNGA 5 cut(s) 127, 153, 170, 231, 590
Hpy188III TCNNGA 3 cut(s) 193, 239, 270
Hpy8I GTNNAC 4 cut(s) 82, 332, 364, 529
HpyAV CCTTC 1 cut(s) 596
HpyCH4III ACNGT 3 cut(s) 38, 281, 480
HpyCH4IV ACGT 2 cut(s) 328, 357
HpyCH4V TGCA 1 cut(s) 364
HpyF10VI GCNNNNNNNGC 1 cut(s) 17
HpyF3I CTNAG 4 cut(s) 150, 228, 312, 388
HpySE526I ACGT 2 cut(s) 328, 357
Hsp92I GRCGYC 1 cut(s) 525
Hsp92II CATG 1 cut(s) 28
Ksp22I TGATCA 1 cut(s) 127
Kzo9I GATC 2 cut(s) 127, 394
LguI GCTCTTC 2 cut(s) 51, 453
LmnI GCTCC 2 cut(s) 139, 229
LpnPI CCDG 4 cut(s) 352, 482, 489, 545
Lsp1109I GCAGC 4 cut(s) 23, 26, 29, 605
LweI GCATC 1 cut(s) 189
MaeI CTAG 3 cut(s) 270, 384, 462
MaeII ACGT 2 cut(s) 328, 357
MaeIII GTNAC 1 cut(s) 464
MalI GATC 2 cut(s) 129, 396
MboI GATC 2 cut(s) 127, 394
MboII GAAGA 6 cut(s) 68, 114, 389, 440, 443, 499
MhlI GDGCHC 2 cut(s) 366, 547
MmeI TCCRAC 1 cut(s) 634
MnlI CCTC 5 cut(s) 159, 222, 237, 316, 571
MroXI GAANNNNTTC 1 cut(s) 60
MseI TTAA 1 cut(s) 565
MspI CCGG 1 cut(s) 469
MwoI GCNNNNNNNGC 1 cut(s) 17
NdeII GATC 2 cut(s) 127, 394
NlaIII CATG 1 cut(s) 28
NlaIV GGNNCC 1 cut(s) 340
PciSI GCTCTTC 2 cut(s) 51, 453
PcsI WCGNNNNNNNCGW 1 cut(s) 522
PdmI GAANNNNTTC 1 cut(s) 60
PfeI GAWTC 4 cut(s) 115, 171, 266, 509
PinAI ACCGGT 1 cut(s) 468
PkrI GCNGC 5 cut(s) 13, 16, 19, 524, 620
PspN4I GGNNCC 1 cut(s) 340
SalI GTCGAC 1 cut(s) 80
SapI GCTCTTC 2 cut(s) 51, 453
SaqAI TTAA 1 cut(s) 565
SatI GCNGC 5 cut(s) 12, 15, 18, 523, 619
Sau3AI GATC 2 cut(s) 127, 394
SduI GDGCHC 2 cut(s) 366, 547
SetI ASST 8 cut(s) 63, 136, 226, 331, 360, 389, 444, 582
SfaNI GCATC 1 cut(s) 189
SmlI CTYRAG 1 cut(s) 495
SmoI CTYRAG 1 cut(s) 495
SsiI CCGC 2 cut(s) 137, 522
SspMI CTAG 3 cut(s) 270, 384, 462
TaaI ACNGT 3 cut(s) 38, 281, 480
TaiI ACGT 2 cut(s) 331, 360
TaqI TCGA 5 cut(s) 81, 113, 192, 393, 547
TauI GCSGC 1 cut(s) 525
TfiI GAWTC 4 cut(s) 115, 171, 266, 509
Tru1I TTAA 1 cut(s) 565
Tru9I TTAA 1 cut(s) 565
TscAI CASTG 3 cut(s) 371, 485, 547
TseI GCWGC 4 cut(s) 11, 14, 17, 618
TspDTI ATGAA 2 cut(s) 99, 526
TspRI CASTG 3 cut(s) 371, 485, 547
VneI GTGCAC 1 cut(s) 362
XapI RAATTY 6 cut(s) 72, 164, 232, 250, 370, 490
XbaI TCTAGA 1 cut(s) 269
XmiI GTMKAC 2 cut(s) 81, 528
XmnI GAANNNNTTC 1 cut(s) 60
XspI CTAG 3 cut(s) 270, 384, 462
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.