Rroxscaffold_6G00419410

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0016873
Physical Location & Seq
Forward (+)
40893851 .. 40894727
877 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00419410.1

Sequence Viewer

Length: 645 bp
ATGCAAGCAGAGAAGCAGCAGCAGCAGACATGGAAAATCACCGTCCAAGCCAAAACCAAGAAGAGCTTCAACTTCAAATTCACGTCGACCCAAATCGTCCCCACTTGGAAGTTTCATCGATTCTCTCTTCTGATCAAGCTCCGCAAAATTATCCTCAGAGTGAAACTGAATTCAGAATCCACAGCATCATCAGTTTCGAGAAAAAGAAAAGCAACCCTCAAATCCAAGCTCCTCAGAATTTTCAAGAAAATTGGAATTCCACGCACCAAGAATCTAGACCATACTGTCCATGACCCCAAATCCCAATCGCCTCTACGTAGACTGAAACAACACGTTTACAAGGAACCAATTTCTGTTGCTACGTTGTGCACTGGAATTCTTGTGTTTCTAGCTCAGTCGATCTTCAGCATAGTTCAGAAGGGTTTCGTTGTTTGTAGTTTGGCTACCTTGCTCTTCTTCTTTTCTCTAGTACCCGGTAAATACGGTGTGGGAAGAATTCTCAAGTTTCTGGTGATTCTAACGCTTGCGGCGTCTACCAGTTCATCAGTGCTCGACTTCAATAATTATATTAAGTTTTGCGGGAGATATGTCTCGGACTACATTGGGAAGGCTTCCAACTATGCTGCTCTTGTTTTTATGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

214

Amino Acids

24.36

Weight (kDa)

10.59

Isoelectric Point (pI)

29.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016873)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g09930
prunus_persica Prupe.6G293200_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0460521
rosa_laevigata RLG00000024997
rosa_multiflora Rmu_co8422927.1_g000001 Rmu_sc0004267.1_g000003 Rmu_sc0006046.1_g000003
rosa_roxburghii Rroxscaffold_6G00419410
rosa_rugosa Rorug03G0043300
rosa_samantha Rh3AG101400 Rh3BG105400 Rh3CG107200 Rh3DG106800
rosa_wichuraiana Rw3G008630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 284
AccI GTMKAC 3 cut(s) 86, 319, 533
AciI CCGC 3 cut(s) 142, 527, 579
AcsI RAATTY 6 cut(s) 77, 169, 237, 255, 375, 495
AcuI CTGAAG 1 cut(s) 388
AcyI GRCGYC 1 cut(s) 530
AfaI GTAC 1 cut(s) 471
AflIII ACRYGT 1 cut(s) 331
AgsI TTSAA 4 cut(s) 70, 76, 244, 559
AjiI CACGTC 1 cut(s) 84
AjuI GAANNNNNNNTTGG 2 cut(s) 50, 82
AluBI AGCT 4 cut(s) 66, 139, 229, 392
AluI AGCT 4 cut(s) 66, 139, 229, 392
Alw21I GWGCWC 2 cut(s) 371, 552
Alw26I GTCTC 1 cut(s) 595
Alw44I GTGCAC 1 cut(s) 367
ApaLI GTGCAC 1 cut(s) 367
ApeKI GCWGC 4 cut(s) 16, 19, 22, 623
ApoI RAATTY 6 cut(s) 77, 169, 237, 255, 375, 495
Asp700I GAANNNNTTC 2 cut(s) 65, 422
AsuC2I CCSGG 1 cut(s) 474
AsuHPI GGTGA 2 cut(s) 31, 523
BaeGI GKGCMC 1 cut(s) 371
Bbv12I GWGCWC 2 cut(s) 371, 552
BbvI GCAGC 4 cut(s) 28, 31, 34, 610
BclI TGATCA 1 cut(s) 132
BcnI CCSGG 1 cut(s) 474
BcoDI GTCTC 1 cut(s) 595
BfaI CTAG 3 cut(s) 275, 389, 467
BisI GCNGC 5 cut(s) 17, 20, 23, 528, 624
BlsI GCNGC 5 cut(s) 18, 21, 24, 529, 625
Bme1390I CCNGG 1 cut(s) 474
BmgBI CACGTC 1 cut(s) 84
BmiI GGNNCC 1 cut(s) 345
BmrFI CCNGG 1 cut(s) 474
BmsI GCATC 1 cut(s) 194
BpuEI CTTGAG 1 cut(s) 485
BpuMI CCSGG 1 cut(s) 474
Bsa29I ATCGAT 1 cut(s) 118
BsaAI YACGTR 1 cut(s) 317
BsaHI GRCGYC 1 cut(s) 530
Bse1I ACTGG 2 cut(s) 376, 537
BseCI ATCGAT 1 cut(s) 118
BseMII CTCAG 3 cut(s) 169, 247, 407
BseNI ACTGG 2 cut(s) 376, 537
BseRI GAGGAG 1 cut(s) 221
BseSI GKGCMC 1 cut(s) 371
BseXI GCAGC 4 cut(s) 28, 31, 34, 610
BshVI ATCGAT 1 cut(s) 118
BsiHKAI GWGCWC 2 cut(s) 371, 552
BsiSI CCGG 1 cut(s) 474
BslFI GGGAC 1 cut(s) 83
BsmAI GTCTC 1 cut(s) 595
BsmFI GGGAC 1 cut(s) 83
Bsp1286I GDGCHC 2 cut(s) 371, 552
Bsp143I GATC 2 cut(s) 132, 399
BspACI CCGC 3 cut(s) 142, 527, 579
BspCNI CTCAG 3 cut(s) 168, 246, 406
BspDI ATCGAT 1 cut(s) 118
BspLI GGNNCC 1 cut(s) 345
BspQI GCTCTTC 2 cut(s) 56, 458
BsrI ACTGG 2 cut(s) 376, 537
BssMI GATC 2 cut(s) 132, 399
BssNI GRCGYC 1 cut(s) 530
Bst4CI ACNGT 3 cut(s) 43, 286, 485
Bst6I CTCTTC 3 cut(s) 56, 132, 458
BstACI GRCGYC 1 cut(s) 530
BstBAI YACGTR 1 cut(s) 317
BstC8I GCNNGC 2 cut(s) 6, 525
BstDEI CTNAG 3 cut(s) 155, 233, 393
BstKTI GATC 2 cut(s) 135, 402
BstMAI GTCTC 1 cut(s) 595
BstMBI GATC 2 cut(s) 132, 399
BstMWI GCNNNNNNNGC 1 cut(s) 22
BstSCI CCNGG 1 cut(s) 472
BstSLI GKGCMC 1 cut(s) 371
BstSNI TACGTA 1 cut(s) 317
BstV1I GCAGC 4 cut(s) 28, 31, 34, 610
Bsu15I ATCGAT 1 cut(s) 118
BsuTUI ATCGAT 1 cut(s) 118
BtrI CACGTC 1 cut(s) 84
BtsIMutI CAGTG 2 cut(s) 369, 552
Cac8I GCNNGC 2 cut(s) 6, 525
ClaI ATCGAT 1 cut(s) 118
CseI GACGC 1 cut(s) 519
Csp6I GTAC 1 cut(s) 470
CviAII CATG 2 cut(s) 30, 290
CviJI RGCY 7 cut(s) 50, 66, 139, 229, 392, 443, 611
CviKI_1 RGCY 7 cut(s) 50, 66, 139, 229, 392, 443, 611
CviQI GTAC 1 cut(s) 470
DdeI CTNAG 3 cut(s) 155, 233, 393
DpnI GATC 2 cut(s) 134, 401
DpnII GATC 2 cut(s) 132, 399
DrdI GACNNNNNNGTC 1 cut(s) 284
DseDI GACNNNNNNGTC 1 cut(s) 284
Eam1104I CTCTTC 3 cut(s) 56, 132, 458
EarI CTCTTC 3 cut(s) 56, 132, 458
Eco105I TACGTA 1 cut(s) 317
Eco57I CTGAAG 1 cut(s) 388
EcoRI GAATTC 4 cut(s) 169, 255, 375, 495
FaeI CATG 2 cut(s) 33, 293
FaiI YATR 8 cut(s) 31, 282, 291, 410, 567, 588, 621, 638
FalI AAGNNNNNCTT 2 cut(s) 50, 82
FaqI GGGAC 1 cut(s) 83
FatI CATG 2 cut(s) 29, 289
FauI CCCGC 1 cut(s) 572
FbaI TGATCA 1 cut(s) 132
FblI GTMKAC 3 cut(s) 86, 319, 533
Fnu4HI GCNGC 5 cut(s) 17, 20, 23, 528, 624
Fsp4HI GCNGC 5 cut(s) 17, 20, 23, 528, 624
FspBI CTAG 3 cut(s) 275, 389, 467
GluI GCNGC 5 cut(s) 17, 20, 23, 528, 624
HapII CCGG 1 cut(s) 474
HgaI GACGC 1 cut(s) 519
Hin1I GRCGYC 1 cut(s) 530
Hin1II CATG 2 cut(s) 33, 293
HincII GTYRAC 1 cut(s) 87
HindII GTYRAC 1 cut(s) 87
HinfI GANTC 4 cut(s) 120, 176, 271, 514
HpaII CCGG 1 cut(s) 474
HphI GGTGA 2 cut(s) 31, 523
Hpy166II GTNNAC 5 cut(s) 87, 320, 337, 369, 534
Hpy188I TCNGA 6 cut(s) 132, 158, 175, 236, 417, 595
Hpy188III TCNNGA 3 cut(s) 198, 244, 275
Hpy8I GTNNAC 5 cut(s) 87, 320, 337, 369, 534
Hpy99I CGWCG 1 cut(s) 88
HpyAV CCTTC 2 cut(s) 412, 601
HpyCH4III ACNGT 3 cut(s) 43, 286, 485
HpyCH4IV ACGT 4 cut(s) 83, 316, 333, 362
HpyCH4V TGCA 2 cut(s) 4, 369
HpyF10VI GCNNNNNNNGC 1 cut(s) 22
HpyF3I CTNAG 3 cut(s) 155, 233, 393
HpySE526I ACGT 4 cut(s) 83, 316, 333, 362
Hsp92I GRCGYC 1 cut(s) 530
Hsp92II CATG 2 cut(s) 33, 293
Ksp22I TGATCA 1 cut(s) 132
Kzo9I GATC 2 cut(s) 132, 399
LguI GCTCTTC 2 cut(s) 56, 458
LmnI GCTCC 2 cut(s) 144, 234
LpnPI CCDG 4 cut(s) 357, 487, 494, 550
Lsp1109I GCAGC 4 cut(s) 28, 31, 34, 610
LweI GCATC 1 cut(s) 194
MaeI CTAG 3 cut(s) 275, 389, 467
MaeII ACGT 4 cut(s) 83, 316, 333, 362
MalI GATC 2 cut(s) 134, 401
MboI GATC 2 cut(s) 132, 399
MboII GAAGA 6 cut(s) 73, 119, 394, 445, 448, 504
MhlI GDGCHC 2 cut(s) 371, 552
MmeI TCCRAC 1 cut(s) 639
MnlI CCTC 4 cut(s) 164, 227, 242, 321
MroXI GAANNNNTTC 2 cut(s) 65, 422
MseI TTAA 1 cut(s) 570
MspI CCGG 1 cut(s) 474
MspR9I CCNGG 1 cut(s) 474
MwoI GCNNNNNNNGC 1 cut(s) 22
NciI CCSGG 1 cut(s) 474
NdeII GATC 2 cut(s) 132, 399
NlaIII CATG 2 cut(s) 33, 293
NlaIV GGNNCC 1 cut(s) 345
PciSI GCTCTTC 2 cut(s) 56, 458
PcsI WCGNNNNNNNCGW 1 cut(s) 527
PdmI GAANNNNTTC 2 cut(s) 65, 422
PfeI GAWTC 4 cut(s) 120, 176, 271, 514
PkrI GCNGC 5 cut(s) 18, 21, 24, 529, 625
Ppu21I YACGTR 1 cut(s) 317
PspN4I GGNNCC 1 cut(s) 345
RsaI GTAC 1 cut(s) 471
RsaNI GTAC 1 cut(s) 470
SalI GTCGAC 1 cut(s) 85
SapI GCTCTTC 2 cut(s) 56, 458
SaqAI TTAA 1 cut(s) 570
SatI GCNGC 5 cut(s) 17, 20, 23, 528, 624
Sau3AI GATC 2 cut(s) 132, 399
ScrFI CCNGG 1 cut(s) 474
SduI GDGCHC 2 cut(s) 371, 552
SetI ASST 9 cut(s) 68, 86, 141, 231, 319, 336, 365, 394, 449
SfaNI GCATC 1 cut(s) 194
SmlI CTYRAG 1 cut(s) 500
SmoI CTYRAG 1 cut(s) 500
SnaBI TACGTA 1 cut(s) 317
SsiI CCGC 3 cut(s) 142, 527, 579
SspMI CTAG 3 cut(s) 275, 389, 467
StyD4I CCNGG 1 cut(s) 472
TaaI ACNGT 3 cut(s) 43, 286, 485
TaiI ACGT 4 cut(s) 86, 319, 336, 365
TaqI TCGA 5 cut(s) 86, 118, 197, 398, 552
TauI GCSGC 1 cut(s) 530
TfiI GAWTC 4 cut(s) 120, 176, 271, 514
Tru1I TTAA 1 cut(s) 570
Tru9I TTAA 1 cut(s) 570
TscAI CASTG 2 cut(s) 376, 552
TseI GCWGC 4 cut(s) 16, 19, 22, 623
TspDTI ATGAA 2 cut(s) 104, 531
TspRI CASTG 2 cut(s) 376, 552
VneI GTGCAC 1 cut(s) 367
XapI RAATTY 6 cut(s) 77, 169, 237, 255, 375, 495
XbaI TCTAGA 1 cut(s) 274
XmiI GTMKAC 3 cut(s) 86, 319, 533
XmnI GAANNNNTTC 2 cut(s) 65, 422
XspI CTAG 3 cut(s) 275, 389, 467
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.