Rmu_sc0006046.1_g000003

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006046.1
OG0016873
Physical Location & Seq
Reverse (-)
13043 .. 13880
838 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006046.1_g000003.1.cds

Sequence Viewer

Length: 738 bp
atgtctcactctgcttatctacagataacggttagtacagtccagatccaaccactgttcagctgctgctgctctcgtttcataatgcaagcagcagcagcagagaagcagcagcagcagacatggaaaatcaccgtccaagccaaaaccaagaagagcttcaacttcaaattcaagtcgacccaaatcgtccccacttggaagtttcatcgattctctcttctgatcaagctccgcaaaattatcctcagagtgaaactgaattcagaatccacagcatcatcagtttcgagaaaaagaaaagcaaccctcaaatccaagctcctcataattttcaagaaaattggaattccacggaccaagaatctagaccatactgtccatagcgccaaatcccaatcgcctctacttagactgaaacaacacgtttacaaggaaccaatttctgttgctacgttgtgcactggaattcttgtgtttctagctcagtcgatcttcagcattgttcaaaagggtttcgttgtttatagtttggctaccttgctcttcttcttttctctagtaaccggtaaatacagtgtgggaagaattctcaagtttctggtgattctaacgcttgcggcgtctaccagttcatcagtgctcgacttcaataattatattaagttttgtgggaggtatgtctcggactacattgggaaggcttccaactatgctgctcttgtttttatgaattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

245

Amino Acids

27.7

Weight (kDa)

10.38

Isoelectric Point (pI)

27.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016873)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g09930
prunus_persica Prupe.6G293200_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0460521
rosa_laevigata RLG00000024997
rosa_multiflora Rmu_co8422927.1_g000001 Rmu_sc0004267.1_g000003 Rmu_sc0006046.1_g000003
rosa_roxburghii Rroxscaffold_6G00419410
rosa_rugosa Rorug03G0043300
rosa_samantha Rh3AG101400 Rh3BG105400 Rh3CG107200 Rh3DG106800
rosa_wichuraiana Rw3G008630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 377
AccI GTMKAC 2 cut(s) 179, 626
AciI CCGC 2 cut(s) 235, 620
AclWI GGATC 1 cut(s) 40
AcsI RAATTY 5 cut(s) 170, 262, 348, 468, 588
AcuI CTGAAG 1 cut(s) 481
AcyI GRCGYC 1 cut(s) 623
AfaI GTAC 1 cut(s) 37
AflIII ACRYGT 1 cut(s) 424
AgeI ACCGGT 1 cut(s) 566
AgsI TTSAA 6 cut(s) 163, 169, 175, 337, 509, 652
AjuI GAANNNNNNNTTGG 2 cut(s) 143, 175
AluBI AGCT 5 cut(s) 63, 159, 232, 322, 485
AluI AGCT 5 cut(s) 63, 159, 232, 322, 485
Alw21I GWGCWC 2 cut(s) 464, 645
Alw26I GTCTC 2 cut(s) 9, 688
Alw44I GTGCAC 1 cut(s) 460
AlwI GGATC 1 cut(s) 40
AlwNI CAGNNNCTG 1 cut(s) 66
ApaLI GTGCAC 1 cut(s) 460
ApoI RAATTY 5 cut(s) 170, 262, 348, 468, 588
AsiGI ACCGGT 1 cut(s) 566
Asp700I GAANNNNTTC 1 cut(s) 158
AspLEI GCGC 1 cut(s) 389
AspS9I GGNCC 1 cut(s) 357
AsuHPI GGTGA 2 cut(s) 124, 616
AvaII GGWCC 1 cut(s) 357
BaeGI GKGCMC 1 cut(s) 464
Bbv12I GWGCWC 2 cut(s) 464, 645
BclI TGATCA 1 cut(s) 225
BcoDI GTCTC 2 cut(s) 9, 688
BfaI CTAG 3 cut(s) 368, 482, 560
BfmI CTRYAG 1 cut(s) 20
BfoI RGCGCY 1 cut(s) 390
Bme18I GGWCC 1 cut(s) 357
BmgT120I GGNCC 1 cut(s) 357
BmiI GGNNCC 1 cut(s) 438
BmsI GCATC 1 cut(s) 287
BpuEI CTTGAG 1 cut(s) 578
Bsa29I ATCGAT 1 cut(s) 211
BsaHI GRCGYC 1 cut(s) 623
BsaJI CCNNGG 1 cut(s) 353
BsaWI WCCGGW 1 cut(s) 566
Bse118I RCCGGY 1 cut(s) 566
Bse1I ACTGG 2 cut(s) 469, 630
BseCI ATCGAT 1 cut(s) 211
BseDI CCNNGG 1 cut(s) 353
BseMII CTCAG 2 cut(s) 262, 500
BseNI ACTGG 2 cut(s) 469, 630
BseRI GAGGAG 1 cut(s) 314
BseSI GKGCMC 1 cut(s) 464
BshTI ACCGGT 1 cut(s) 566
BshVI ATCGAT 1 cut(s) 211
BsiHKAI GWGCWC 2 cut(s) 464, 645
BsiSI CCGG 1 cut(s) 567
BslFI GGGAC 1 cut(s) 176
BsmAI GTCTC 2 cut(s) 9, 688
BsmFI GGGAC 1 cut(s) 176
Bsp1286I GDGCHC 2 cut(s) 464, 645
Bsp143I GATC 3 cut(s) 45, 225, 492
BspACI CCGC 2 cut(s) 235, 620
BspCNI CTCAG 2 cut(s) 261, 499
BspDI ATCGAT 1 cut(s) 211
BspLI GGNNCC 1 cut(s) 438
BspPI GGATC 1 cut(s) 40
BspQI GCTCTTC 2 cut(s) 149, 551
BsrFI RCCGGY 1 cut(s) 566
BsrI ACTGG 2 cut(s) 469, 630
BssAI RCCGGY 1 cut(s) 566
BssECI CCNNGG 1 cut(s) 353
BssMI GATC 3 cut(s) 45, 225, 492
BssNI GRCGYC 1 cut(s) 623
Bst4CI ACNGT 6 cut(s) 31, 40, 57, 136, 379, 578
Bst6I CTCTTC 3 cut(s) 149, 225, 551
BstACI GRCGYC 1 cut(s) 623
BstC8I GCNNGC 2 cut(s) 90, 618
BstDEI CTNAG 3 cut(s) 248, 410, 486
BstDSI CCRYGG 1 cut(s) 353
BstH2I RGCGCY 1 cut(s) 390
BstHHI GCGC 1 cut(s) 389
BstKTI GATC 3 cut(s) 48, 228, 495
BstMAI GTCTC 2 cut(s) 9, 688
BstMBI GATC 3 cut(s) 45, 225, 492
BstMWI GCNNNNNNNGC 3 cut(s) 69, 98, 115
BstSFI CTRYAG 1 cut(s) 20
BstSLI GKGCMC 1 cut(s) 464
BstX2I RGATCY 1 cut(s) 45
BstYI RGATCY 1 cut(s) 45
Bsu15I ATCGAT 1 cut(s) 211
BsuTUI ATCGAT 1 cut(s) 211
BtgI CCRYGG 1 cut(s) 353
BtsIMutI CAGTG 4 cut(s) 53, 462, 583, 645
Cac8I GCNNGC 2 cut(s) 90, 618
CaiI CAGNNNCTG 1 cut(s) 66
CfoI GCGC 1 cut(s) 389
Cfr10I RCCGGY 1 cut(s) 566
Cfr13I GGNCC 1 cut(s) 357
ClaI ATCGAT 1 cut(s) 211
CseI GACGC 1 cut(s) 612
Csp6I GTAC 1 cut(s) 36
CspAI ACCGGT 1 cut(s) 566
CviAII CATG 1 cut(s) 123
CviJI RGCY 8 cut(s) 63, 143, 159, 232, 322, 485, 536, 704
CviKI_1 RGCY 8 cut(s) 63, 143, 159, 232, 322, 485, 536, 704
CviQI GTAC 1 cut(s) 36
DdeI CTNAG 3 cut(s) 248, 410, 486
DpnI GATC 3 cut(s) 47, 227, 494
DpnII GATC 3 cut(s) 45, 225, 492
DrdI GACNNNNNNGTC 1 cut(s) 377
DseDI GACNNNNNNGTC 1 cut(s) 377
Eam1104I CTCTTC 3 cut(s) 149, 225, 551
EarI CTCTTC 3 cut(s) 149, 225, 551
Eco47I GGWCC 1 cut(s) 357
Eco57I CTGAAG 1 cut(s) 481
EcoRI GAATTC 4 cut(s) 262, 348, 468, 588
FaeI CATG 1 cut(s) 126
FalI AAGNNNNNCTT 2 cut(s) 143, 175
FaqI GGGAC 1 cut(s) 176
FatI CATG 1 cut(s) 122
FbaI TGATCA 1 cut(s) 225
FblI GTMKAC 2 cut(s) 179, 626
FspBI CTAG 3 cut(s) 368, 482, 560
GlaI GCGC 1 cut(s) 388
HaeII RGCGCY 1 cut(s) 390
HapII CCGG 1 cut(s) 567
HgaI GACGC 1 cut(s) 612
HhaI GCGC 1 cut(s) 389
Hin1I GRCGYC 1 cut(s) 623
Hin1II CATG 1 cut(s) 126
Hin6I GCGC 1 cut(s) 387
HinP1I GCGC 1 cut(s) 387
HincII GTYRAC 1 cut(s) 180
HindII GTYRAC 1 cut(s) 180
HinfI GANTC 4 cut(s) 213, 269, 364, 607
HpaII CCGG 1 cut(s) 567
HphI GGTGA 2 cut(s) 124, 616
Hpy166II GTNNAC 4 cut(s) 180, 430, 462, 627
Hpy188I TCNGA 4 cut(s) 225, 251, 268, 688
Hpy188III TCNNGA 4 cut(s) 43, 291, 337, 368
Hpy8I GTNNAC 4 cut(s) 180, 430, 462, 627
HpyAV CCTTC 1 cut(s) 694
HpyCH4III ACNGT 6 cut(s) 31, 40, 57, 136, 379, 578
HpyCH4IV ACGT 2 cut(s) 426, 455
HpyCH4V TGCA 2 cut(s) 88, 462
HpyF10VI GCNNNNNNNGC 3 cut(s) 69, 98, 115
HpyF3I CTNAG 3 cut(s) 248, 410, 486
HpySE526I ACGT 2 cut(s) 426, 455
Hsp92I GRCGYC 1 cut(s) 623
Hsp92II CATG 1 cut(s) 126
HspAI GCGC 1 cut(s) 387
Ksp22I TGATCA 1 cut(s) 225
Kzo9I GATC 3 cut(s) 45, 225, 492
LguI GCTCTTC 2 cut(s) 149, 551
LmnI GCTCC 2 cut(s) 237, 327
LpnPI CCDG 5 cut(s) 56, 450, 580, 587, 643
LweI GCATC 1 cut(s) 287
MaeI CTAG 3 cut(s) 368, 482, 560
MaeII ACGT 2 cut(s) 426, 455
MaeIII GTNAC 1 cut(s) 562
MalI GATC 3 cut(s) 47, 227, 494
MboI GATC 3 cut(s) 45, 225, 492
MboII GAAGA 6 cut(s) 166, 212, 487, 538, 541, 597
MflI RGATCY 1 cut(s) 45
MhlI GDGCHC 2 cut(s) 464, 645
MmeI TCCRAC 2 cut(s) 73, 732
MnlI CCTC 5 cut(s) 257, 320, 335, 414, 669
MroXI GAANNNNTTC 1 cut(s) 158
MseI TTAA 1 cut(s) 663
MspA1I CMGCKG 1 cut(s) 63
MspI CCGG 1 cut(s) 567
MwoI GCNNNNNNNGC 3 cut(s) 69, 98, 115
NdeII GATC 3 cut(s) 45, 225, 492
NlaIII CATG 1 cut(s) 126
NlaIV GGNNCC 1 cut(s) 438
PciSI GCTCTTC 2 cut(s) 149, 551
PcsI WCGNNNNNNNCGW 1 cut(s) 620
PdmI GAANNNNTTC 1 cut(s) 158
PfeI GAWTC 4 cut(s) 213, 269, 364, 607
PinAI ACCGGT 1 cut(s) 566
PspN4I GGNNCC 1 cut(s) 438
PspPI GGNCC 1 cut(s) 357
PstNI CAGNNNCTG 1 cut(s) 66
PsuI RGATCY 1 cut(s) 45
PvuII CAGCTG 1 cut(s) 63
RsaI GTAC 1 cut(s) 37
RsaNI GTAC 1 cut(s) 36
SalI GTCGAC 1 cut(s) 178
SapI GCTCTTC 2 cut(s) 149, 551
SaqAI TTAA 1 cut(s) 663
Sau3AI GATC 3 cut(s) 45, 225, 492
Sau96I GGNCC 1 cut(s) 357
SduI GDGCHC 2 cut(s) 464, 645
SetI ASST 9 cut(s) 65, 161, 234, 324, 429, 458, 487, 542, 680
SfaNI GCATC 1 cut(s) 287
SfcI CTRYAG 1 cut(s) 20
SinI GGWCC 1 cut(s) 357
SmlI CTYRAG 1 cut(s) 593
SmoI CTYRAG 1 cut(s) 593
SsiI CCGC 2 cut(s) 235, 620
SspMI CTAG 3 cut(s) 368, 482, 560
TaaI ACNGT 6 cut(s) 31, 40, 57, 136, 379, 578
TaiI ACGT 2 cut(s) 429, 458
TaqI TCGA 5 cut(s) 179, 211, 290, 491, 645
TatI WGTACW 1 cut(s) 35
TauI GCSGC 1 cut(s) 623
TfiI GAWTC 4 cut(s) 213, 269, 364, 607
Tru1I TTAA 1 cut(s) 663
Tru9I TTAA 1 cut(s) 663
TscAI CASTG 4 cut(s) 60, 469, 583, 645
TspDTI ATGAA 3 cut(s) 70, 197, 624
TspGWI ACGGA 1 cut(s) 370
TspRI CASTG 4 cut(s) 60, 469, 583, 645
VneI GTGCAC 1 cut(s) 460
VpaK11BI GGWCC 1 cut(s) 357
XapI RAATTY 5 cut(s) 170, 262, 348, 468, 588
XbaI TCTAGA 1 cut(s) 367
XmiI GTMKAC 2 cut(s) 179, 626
XmnI GAANNNNTTC 1 cut(s) 158
XspI CTAG 3 cut(s) 368, 482, 560
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.