Rh3BG105400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0016873
Physical Location & Seq
Reverse (-)
8418086 .. 8419978
1893 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG105400.1

Sequence Viewer

Length: 729 bp
ATGTCTCACTCTGCTTATCTACAGATAACGGTCAGTACAGTCCAGATCCAACCACTGTTCAGCTGCTGCTGCTCTCGTTTCATAATGCAAGCAGAGAAGCAGCAGCAGCAGACATGGAAAATCACCGTCCAAGCCAAAACCAAGAAGAGCTTCAACTTCAAATTCAAGTCGACCCAAATCGTCCCCACTTGGAAGTTTCATCGATTCTCTCTTCTGATCAAGCTCCGCAAAATTATCCTCAGAGTGAAACTGAATTCAGAATCCACAGCATCATCAGTTTCGAGGAAAAGAAAAGCAACCCTCAAATCCAAGCTCCTCAGAATTTTCAAGAAAATTGGAATTCCACGCACCAAGAATCTAGACCATACTGTCCATAGACCCAAATCCCAATCGCCTCTACTTAGACTGAGACAACACGTTTACAAGGAACCAATTTCTGTTGCTACGTTGTGCACTGGAATTCTTGTGTTTCTAGCTCAGTCGATCTTCAGCATTGTTCAAAAGGGTTTCGTTGTTTATAGTTTGGCTACCTTGCTCTTCTTCTTTTCTCTAGTAACCGGTAAATACAGTGTGGGAAGAATTCTCAAGTTTCTGGTGATCCTAACGCTTGCGGCGTCTACCAGTTCATCAGTGCTCGACTTCAATAATTATATTAAGTTTTGTGGGAGGTATGTCTCGGACTACATTGGGAAGGCTTCCAACTATGCTGCTCTTGTTTTTATGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

242

Amino Acids

27.65

Weight (kDa)

10.55

Isoelectric Point (pI)

30.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016873)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g09930
prunus_persica Prupe.6G293200_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0460521
rosa_laevigata RLG00000024997
rosa_multiflora Rmu_co8422927.1_g000001 Rmu_sc0004267.1_g000003 Rmu_sc0006046.1_g000003
rosa_roxburghii Rroxscaffold_6G00419410
rosa_rugosa Rorug03G0043300
rosa_samantha Rh3AG101400 Rh3BG105400 Rh3CG107200 Rh3DG106800
rosa_wichuraiana Rw3G008630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 368
AccI GTMKAC 2 cut(s) 170, 617
AciI CCGC 2 cut(s) 226, 611
AclWI GGATC 2 cut(s) 40, 592
AcsI RAATTY 6 cut(s) 161, 253, 321, 339, 459, 579
AcuI CTGAAG 1 cut(s) 472
AcyI GRCGYC 1 cut(s) 614
AfaI GTAC 1 cut(s) 37
AflIII ACRYGT 1 cut(s) 415
AgeI ACCGGT 1 cut(s) 557
AgsI TTSAA 6 cut(s) 154, 160, 166, 328, 500, 643
AjuI GAANNNNNNNTTGG 2 cut(s) 134, 166
AluBI AGCT 5 cut(s) 63, 150, 223, 313, 476
AluI AGCT 5 cut(s) 63, 150, 223, 313, 476
Alw21I GWGCWC 2 cut(s) 455, 636
Alw26I GTCTC 3 cut(s) 9, 403, 679
Alw44I GTGCAC 1 cut(s) 451
AlwI GGATC 2 cut(s) 40, 592
AlwNI CAGNNNCTG 1 cut(s) 66
ApaLI GTGCAC 1 cut(s) 451
ApeKI GCWGC 7 cut(s) 63, 66, 69, 100, 103, 106, 707
ApoI RAATTY 6 cut(s) 161, 253, 321, 339, 459, 579
AsiGI ACCGGT 1 cut(s) 557
Asp700I GAANNNNTTC 1 cut(s) 149
AsuHPI GGTGA 2 cut(s) 115, 607
BaeGI GKGCMC 1 cut(s) 455
Bbv12I GWGCWC 2 cut(s) 455, 636
BbvI GCAGC 7 cut(s) 50, 53, 56, 112, 115, 118, 694
BclI TGATCA 1 cut(s) 216
BcoDI GTCTC 3 cut(s) 9, 403, 679
BfaI CTAG 3 cut(s) 359, 473, 551
BfmI CTRYAG 1 cut(s) 20
BisI GCNGC 8 cut(s) 64, 67, 70, 101, 104, 107, 612, 708
BlsI GCNGC 8 cut(s) 65, 68, 71, 102, 105, 108, 613, 709
BmiI GGNNCC 1 cut(s) 429
BmsI GCATC 1 cut(s) 278
BpuEI CTTGAG 1 cut(s) 569
Bsa29I ATCGAT 1 cut(s) 202
BsaHI GRCGYC 1 cut(s) 614
BsaWI WCCGGW 1 cut(s) 557
Bse118I RCCGGY 1 cut(s) 557
Bse1I ACTGG 2 cut(s) 460, 621
BseCI ATCGAT 1 cut(s) 202
BseMII CTCAG 4 cut(s) 253, 331, 398, 491
BseNI ACTGG 2 cut(s) 460, 621
BseRI GAGGAG 1 cut(s) 305
BseSI GKGCMC 1 cut(s) 455
BseXI GCAGC 7 cut(s) 50, 53, 56, 112, 115, 118, 694
BshTI ACCGGT 1 cut(s) 557
BshVI ATCGAT 1 cut(s) 202
BsiHKAI GWGCWC 2 cut(s) 455, 636
BsiSI CCGG 1 cut(s) 558
BslFI GGGAC 1 cut(s) 167
BsmAI GTCTC 3 cut(s) 9, 403, 679
BsmFI GGGAC 1 cut(s) 167
Bsp1286I GDGCHC 2 cut(s) 455, 636
Bsp143I GATC 4 cut(s) 45, 216, 483, 597
BspACI CCGC 2 cut(s) 226, 611
BspCNI CTCAG 4 cut(s) 252, 330, 399, 490
BspDI ATCGAT 1 cut(s) 202
BspLI GGNNCC 1 cut(s) 429
BspPI GGATC 2 cut(s) 40, 592
BspQI GCTCTTC 2 cut(s) 140, 542
BsrFI RCCGGY 1 cut(s) 557
BsrI ACTGG 2 cut(s) 460, 621
BssAI RCCGGY 1 cut(s) 557
BssMI GATC 4 cut(s) 45, 216, 483, 597
BssNI GRCGYC 1 cut(s) 614
Bst4CI ACNGT 6 cut(s) 31, 40, 57, 127, 370, 569
Bst6I CTCTTC 3 cut(s) 140, 216, 542
BstACI GRCGYC 1 cut(s) 614
BstC8I GCNNGC 2 cut(s) 90, 609
BstDEI CTNAG 5 cut(s) 239, 317, 401, 407, 477
BstKTI GATC 4 cut(s) 48, 219, 486, 600
BstMAI GTCTC 3 cut(s) 9, 403, 679
BstMBI GATC 4 cut(s) 45, 216, 483, 597
BstMWI GCNNNNNNNGC 2 cut(s) 69, 106
BstSFI CTRYAG 1 cut(s) 20
BstSLI GKGCMC 1 cut(s) 455
BstV1I GCAGC 7 cut(s) 50, 53, 56, 112, 115, 118, 694
BstX2I RGATCY 1 cut(s) 45
BstYI RGATCY 1 cut(s) 45
Bsu15I ATCGAT 1 cut(s) 202
BsuTUI ATCGAT 1 cut(s) 202
BtsIMutI CAGTG 4 cut(s) 53, 453, 574, 636
Cac8I GCNNGC 2 cut(s) 90, 609
CaiI CAGNNNCTG 1 cut(s) 66
Cfr10I RCCGGY 1 cut(s) 557
ClaI ATCGAT 1 cut(s) 202
CseI GACGC 1 cut(s) 603
Csp6I GTAC 1 cut(s) 36
CspAI ACCGGT 1 cut(s) 557
CviAII CATG 1 cut(s) 114
CviJI RGCY 8 cut(s) 63, 134, 150, 223, 313, 476, 527, 695
CviKI_1 RGCY 8 cut(s) 63, 134, 150, 223, 313, 476, 527, 695
CviQI GTAC 1 cut(s) 36
DdeI CTNAG 5 cut(s) 239, 317, 401, 407, 477
DpnI GATC 4 cut(s) 47, 218, 485, 599
DpnII GATC 4 cut(s) 45, 216, 483, 597
DrdI GACNNNNNNGTC 1 cut(s) 368
DseDI GACNNNNNNGTC 1 cut(s) 368
Eam1104I CTCTTC 3 cut(s) 140, 216, 542
EarI CTCTTC 3 cut(s) 140, 216, 542
Eco57I CTGAAG 1 cut(s) 472
EcoRI GAATTC 4 cut(s) 253, 339, 459, 579
FaeI CATG 1 cut(s) 117
FaiI YATR 9 cut(s) 83, 115, 366, 375, 519, 651, 672, 705, 722
FalI AAGNNNNNCTT 2 cut(s) 134, 166
FaqI GGGAC 1 cut(s) 167
FatI CATG 1 cut(s) 113
FbaI TGATCA 1 cut(s) 216
FblI GTMKAC 2 cut(s) 170, 617
Fnu4HI GCNGC 8 cut(s) 64, 67, 70, 101, 104, 107, 612, 708
Fsp4HI GCNGC 8 cut(s) 64, 67, 70, 101, 104, 107, 612, 708
FspBI CTAG 3 cut(s) 359, 473, 551
GluI GCNGC 8 cut(s) 64, 67, 70, 101, 104, 107, 612, 708
HapII CCGG 1 cut(s) 558
HgaI GACGC 1 cut(s) 603
Hin1I GRCGYC 1 cut(s) 614
Hin1II CATG 1 cut(s) 117
HincII GTYRAC 1 cut(s) 171
HindII GTYRAC 1 cut(s) 171
HinfI GANTC 3 cut(s) 204, 260, 355
HpaII CCGG 1 cut(s) 558
HphI GGTGA 2 cut(s) 115, 607
Hpy166II GTNNAC 4 cut(s) 171, 421, 453, 618
Hpy188I TCNGA 5 cut(s) 216, 242, 259, 320, 679
Hpy188III TCNNGA 3 cut(s) 43, 328, 359
Hpy8I GTNNAC 4 cut(s) 171, 421, 453, 618
HpyAV CCTTC 1 cut(s) 685
HpyCH4III ACNGT 6 cut(s) 31, 40, 57, 127, 370, 569
HpyCH4IV ACGT 2 cut(s) 417, 446
HpyCH4V TGCA 2 cut(s) 88, 453
HpyF10VI GCNNNNNNNGC 2 cut(s) 69, 106
HpyF3I CTNAG 5 cut(s) 239, 317, 401, 407, 477
HpySE526I ACGT 2 cut(s) 417, 446
Hsp92I GRCGYC 1 cut(s) 614
Hsp92II CATG 1 cut(s) 117
Ksp22I TGATCA 1 cut(s) 216
Kzo9I GATC 4 cut(s) 45, 216, 483, 597
LguI GCTCTTC 2 cut(s) 140, 542
LmnI GCTCC 2 cut(s) 228, 318
LpnPI CCDG 5 cut(s) 56, 441, 571, 578, 634
Lsp1109I GCAGC 7 cut(s) 50, 53, 56, 112, 115, 118, 694
LweI GCATC 1 cut(s) 278
MaeI CTAG 3 cut(s) 359, 473, 551
MaeII ACGT 2 cut(s) 417, 446
MaeIII GTNAC 1 cut(s) 553
MalI GATC 4 cut(s) 47, 218, 485, 599
MboI GATC 4 cut(s) 45, 216, 483, 597
MboII GAAGA 6 cut(s) 157, 203, 478, 529, 532, 588
MflI RGATCY 1 cut(s) 45
MhlI GDGCHC 2 cut(s) 455, 636
MmeI TCCRAC 2 cut(s) 73, 723
MnlI CCTC 6 cut(s) 248, 276, 311, 326, 405, 660
MroXI GAANNNNTTC 1 cut(s) 149
MseI TTAA 1 cut(s) 654
MspA1I CMGCKG 1 cut(s) 63
MspI CCGG 1 cut(s) 558
MwoI GCNNNNNNNGC 2 cut(s) 69, 106
NdeII GATC 4 cut(s) 45, 216, 483, 597
NlaIII CATG 1 cut(s) 117
NlaIV GGNNCC 1 cut(s) 429
PciSI GCTCTTC 2 cut(s) 140, 542
PcsI WCGNNNNNNNCGW 1 cut(s) 611
PdmI GAANNNNTTC 1 cut(s) 149
PfeI GAWTC 3 cut(s) 204, 260, 355
PinAI ACCGGT 1 cut(s) 557
PkrI GCNGC 8 cut(s) 65, 68, 71, 102, 105, 108, 613, 709
PspN4I GGNNCC 1 cut(s) 429
PstNI CAGNNNCTG 1 cut(s) 66
PsuI RGATCY 1 cut(s) 45
PvuII CAGCTG 1 cut(s) 63
RsaI GTAC 1 cut(s) 37
RsaNI GTAC 1 cut(s) 36
SalI GTCGAC 1 cut(s) 169
SapI GCTCTTC 2 cut(s) 140, 542
SaqAI TTAA 1 cut(s) 654
SatI GCNGC 8 cut(s) 64, 67, 70, 101, 104, 107, 612, 708
Sau3AI GATC 4 cut(s) 45, 216, 483, 597
SduI GDGCHC 2 cut(s) 455, 636
SetI ASST 9 cut(s) 65, 152, 225, 315, 420, 449, 478, 533, 671
SfaNI GCATC 1 cut(s) 278
SfcI CTRYAG 1 cut(s) 20
SmlI CTYRAG 1 cut(s) 584
SmoI CTYRAG 1 cut(s) 584
SsiI CCGC 2 cut(s) 226, 611
SspMI CTAG 3 cut(s) 359, 473, 551
TaaI ACNGT 6 cut(s) 31, 40, 57, 127, 370, 569
TaiI ACGT 2 cut(s) 420, 449
TaqI TCGA 5 cut(s) 170, 202, 281, 482, 636
TatI WGTACW 1 cut(s) 35
TauI GCSGC 1 cut(s) 614
TfiI GAWTC 3 cut(s) 204, 260, 355
Tru1I TTAA 1 cut(s) 654
Tru9I TTAA 1 cut(s) 654
TscAI CASTG 4 cut(s) 60, 460, 574, 636
TseI GCWGC 7 cut(s) 63, 66, 69, 100, 103, 106, 707
TspDTI ATGAA 3 cut(s) 70, 188, 615
TspRI CASTG 4 cut(s) 60, 460, 574, 636
VneI GTGCAC 1 cut(s) 451
XapI RAATTY 6 cut(s) 161, 253, 321, 339, 459, 579
XbaI TCTAGA 1 cut(s) 358
XmiI GTMKAC 2 cut(s) 170, 617
XmnI GAANNNNTTC 1 cut(s) 149
XspI CTAG 3 cut(s) 359, 473, 551
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.