Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8453851.1

Orthogroup ID

OG0005489

Physical Location & Seq

Genomic Coordinates Forward (+)

246 .. 1433

Gene Structure 1188 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8453851.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

atgagtgtggtggggattgatattggaaatgagaactgtgtgattgcggtggtgaagcagcggggtattgatgttttgttgaatgaggaatcgaaacgtgaaaccccggctgtggtttgtttcggcgagaagcaaaggtttcttgggtctgctgcttctgcctctgcaatgatgcacccaaaatcgactgtttcgcaggtaaagaggcttattggtaggagatttagggagcctgatgttcaaaaggaccttcgaatgttgccttttcaaacttctgaaggcccagacggtggcattttgatacatttgagttacttgggtggaatgcatacatttacgccggttcaaattacagcgatgctttttgcacatttgagagatattatagagaagaatctggaaatgcctgtttcagattgtgtgatcggtattccatcgtactttacagacttgcagagacgcgcatatttggatgctgcgatagttgctgggttgaagcctttgagattgatgcatgactgtactgcaactgctctcagttatgggatttacaaaacagatttccccagttctggtccaacttacgtggcatttgttgacattggccattgtgatacccaggtctctgttgcatcttttgagtctggacatatgacaatgcgatctcacgcttttgatagaagcttgggagggagagactttgatgaggtcttgtttagtcattttgctgcacagttcaaggagcagtatagaattgatgtgtactctaatgtcaaggcatgtgtcaggctaagggcagcatgtgagaagctgaaaaaggttttgagtgcaaatgcggaggcacctcttaatattgagtgtttaatggatgagaaagatgttaagggtttcattaaaagggaagaatttgaaatgctggcttcaagtttgttggagaggattcgtgttccttgtagtaaagctttagctgatgcaggtttaaccgccgacatgattcattctgtagagcttgttgggtcagggtctaggatcccagctattgctagagcattagtttctctattcaaggtagaaccacgtcggacactgaatgctagtgaatgtgtagcacgtggatgtgctcttcaatgtgcaatgctaagtcctgttttccgagtcagagaatatgaggtttgcatctcgagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04530 ko04612 map04530 map04612

Pfam Domains

Protein Families

HSP70

Protein Analysis

395

Amino Acids

43.67

Weight (kDa)

7.92

Isoelectric Point (pI)

45.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005489)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11660 AT1G11660 AT1G11660 AT1G11660
fragaria_vesca	FvH4_3g22620 FvH4_3g22620 FvH4_3g22620 FvH4_3g22620 FvH4_3g22620
malus_domestica	MD03G1201700.v1.1 MD03G1201800.v1.1 MD11G1218900.v1.1
prunus_persica	Prupe.4G212200_v2.0.a1
pyrus_communis	pycom03g15300 pycom03g15320 pycom11g19290
rosa_chinensis	RchiOBHm_Chr5g0039371
rosa_laevigata	RLG00000033908
rosa_multiflora	Rmu_co8453851.1_g000001 Rmu_sc0006937.1_g000008 Rmu_sc0007310.1_g000013
rosa_roxburghii	Rroxscaffold_1G00040520 Rroxscaffold_1G00041830
rosa_rugosa	Rorug05G0178400
rosa_samantha	Rh5AG264600 Rh5BG269600 Rh5CG302600 Rh5DG277400
rosa_wichuraiana	Rw5G024820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	187, 965
AccB1I	GGYRCC	1 cut(s)	841
AccB7I	CCANNNNNTGG	1 cut(s)	290
AccII	CGCG	1 cut(s)	462
AciI	CCGC	4 cut(s)	47, 61, 836, 984
AclWI	GGATC	2 cut(s)	1024, 1037
AcoI	YGGCCR	1 cut(s)	604
AcsI	RAATTY	1 cut(s)	905
AcuI	CTGAAG	1 cut(s)	297
AcvI	CACGTG	1 cut(s)	1112
AfaI	GTAC	3 cut(s)	440, 523, 764
AfiI	CCNNNNNNNGG	3 cut(s)	112, 290, 572
AjiI	CACGTC	1 cut(s)	1079
AjnI	CCWGG	1 cut(s)	618
AluBI	AGCT	6 cut(s)	684, 811, 962, 968, 1009, 1037
AluI	AGCT	6 cut(s)	684, 811, 962, 968, 1009, 1037
Alw21I	GWGCWC	1 cut(s)	1123
Alw26I	GTCTC	3 cut(s)	451, 628, 690
AlwI	GGATC	2 cut(s)	1024, 1037
Ama87I	CYCGRG	1 cut(s)	1180
AoxI	GGCC	2 cut(s)	280, 604
ApeKI	GCWGC	5 cut(s)	58, 152, 476, 728, 797
ApoI	RAATTY	1 cut(s)	905
AspLEI	GCGC	1 cut(s)	464
AspS9I	GGNCC	3 cut(s)	247, 281, 575
AsuC2I	CCSGG	1 cut(s)	107
AsuHPI	GGTGA	1 cut(s)	64
AsuII	TTCGAA	1 cut(s)	253
AvaI	CYCGRG	1 cut(s)	1180
AvaII	GGWCC	2 cut(s)	247, 575
BaeI	ACNNNNGTAYC	2 cut(s)	606, 639
BalI	TGGCCA	1 cut(s)	606
BamHI	GGATCC	1 cut(s)	1029
BanI	GGYRCC	1 cut(s)	841
BbrPI	CACGTG	1 cut(s)	1112
Bbv12I	GWGCWC	1 cut(s)	1123
BbvI	GCAGC	5 cut(s)	70, 139, 463, 715, 809
BccI	CCATC	1 cut(s)	442
BciT130I	CCWGG	1 cut(s)	620
BcnI	CCSGG	1 cut(s)	107
BcoDI	GTCTC	3 cut(s)	451, 628, 690
BfaI	CTAG	3 cut(s)	1026, 1044, 1095
BfmI	CTRYAG	1 cut(s)	1002
BfuAI	ACCTGC	2 cut(s)	187, 965
BisI	GCNGC	5 cut(s)	59, 153, 477, 729, 798
BlsI	GCNGC	5 cut(s)	60, 154, 478, 730, 799
Bme1390I	CCNGG	2 cut(s)	107, 620
Bme18I	GGWCC	2 cut(s)	247, 575
BmeT110I	CYCGRG	1 cut(s)	1180
BmgBI	CACGTC	1 cut(s)	1079
BmgT120I	GGNCC	3 cut(s)	247, 281, 575
BmiI	GGNNCC	3 cut(s)	231, 843, 1031
BmrFI	CCNGG	2 cut(s)	107, 620
BmrI	ACTGGG	1 cut(s)	561
BmsI	GCATC	6 cut(s)	162, 348, 463, 501, 641, 961
BmuI	ACTGGG	1 cut(s)	561
Bpu10I	CCTNAGC	1 cut(s)	791
Bpu14I	TTCGAA	1 cut(s)	253
BpuMI	CCSGG	1 cut(s)	107
BsaAI	YACGTR	2 cut(s)	586, 1112
BsaI	GGTCTC	1 cut(s)	628
BsaJI	CCNNGG	2 cut(s)	105, 618
Bsc4I	CCNNNNNNNGG	3 cut(s)	112, 290, 572
Bse118I	RCCGGY	1 cut(s)	340
Bse1I	ACTGG	1 cut(s)	567
Bse3DI	GCAATG	2 cut(s)	174, 1140
BseBI	CCWGG	1 cut(s)	620
BseDI	CCNNGG	2 cut(s)	105, 618
BseGI	GGATG	3 cut(s)	478, 874, 1121
BseLI	CCNNNNNNNGG	3 cut(s)	112, 290, 572
BseMI	GCAATG	2 cut(s)	174, 1140
BseMII	CTCAG	1 cut(s)	550
BseNI	ACTGG	1 cut(s)	567
BseXI	GCAGC	5 cut(s)	70, 139, 463, 715, 809
BseYI	CCCAGC	2 cut(s)	488, 1033
BsgI	GTGCAG	1 cut(s)	714
Bsh1236I	CGCG	1 cut(s)	462
BshFI	GGCC	2 cut(s)	282, 606
BshNI	GGYRCC	1 cut(s)	841
BsiHKAI	GWGCWC	1 cut(s)	1123
BsiHKCI	CYCGRG	1 cut(s)	1180
BsiSI	CCGG	2 cut(s)	107, 341
BslI	CCNNNNNNNGG	3 cut(s)	112, 290, 572
BsmAI	GTCTC	3 cut(s)	451, 628, 690
BsmBI	CGTCTC	1 cut(s)	451
BsmI	GAATGC	2 cut(s)	330, 1096
BsnI	GGCC	2 cut(s)	282, 606
Bso31I	GGTCTC	1 cut(s)	628
BsoBI	CYCGRG	1 cut(s)	1180
Bsp119I	TTCGAA	1 cut(s)	253
Bsp1286I	GDGCHC	1 cut(s)	1123
Bsp143I	GATC	3 cut(s)	423, 662, 1029
BspACI	CCGC	4 cut(s)	47, 61, 836, 984
BspANI	GGCC	2 cut(s)	282, 606
BspCNI	CTCAG	1 cut(s)	549
BspFNI	CGCG	1 cut(s)	462
BspLI	GGNNCC	3 cut(s)	231, 843, 1031
BspMI	ACCTGC	2 cut(s)	187, 965
BspPI	GGATC	2 cut(s)	1024, 1037
BspQI	GCTCTTC	1 cut(s)	1128
BspT104I	TTCGAA	1 cut(s)	253
BspT107I	GGYRCC	1 cut(s)	841
BspTNI	GGTCTC	1 cut(s)	628
BsrDI	GCAATG	2 cut(s)	174, 1140
BsrFI	RCCGGY	1 cut(s)	340
BsrI	ACTGG	1 cut(s)	567
BssAI	RCCGGY	1 cut(s)	340
BssECI	CCNNGG	2 cut(s)	105, 618
BssMI	GATC	3 cut(s)	423, 662, 1029
Bst2UI	CCWGG	1 cut(s)	620
Bst4CI	ACNGT	5 cut(s)	38, 190, 290, 521, 735
Bst6I	CTCTTC	1 cut(s)	1128
BstBAI	YACGTR	2 cut(s)	586, 1112
BstBI	TTCGAA	1 cut(s)	253
BstC8I	GCNNGC	1 cut(s)	918
BstDEI	CTNAG	3 cut(s)	536, 791, 1139
BstF5I	GGATG	3 cut(s)	478, 874, 1121
BstFNI	CGCG	1 cut(s)	462
BstHHI	GCGC	1 cut(s)	464
BstKTI	GATC	3 cut(s)	426, 665, 1032
BstMAI	GTCTC	3 cut(s)	451, 628, 690
BstMBI	GATC	3 cut(s)	423, 662, 1029
BstMWI	GCNNNNNNNGC	2 cut(s)	158, 485
BstNI	CCWGG	1 cut(s)	620
BstNSI	RCATGY	2 cut(s)	783, 804
BstSCI	CCNGG	2 cut(s)	105, 618
BstSFI	CTRYAG	1 cut(s)	1002
BstUI	CGCG	1 cut(s)	462
BstV1I	GCAGC	5 cut(s)	70, 139, 463, 715, 809
BstX2I	RGATCY	1 cut(s)	1029
BstYI	RGATCY	1 cut(s)	1029
BsuRI	GGCC	2 cut(s)	282, 606
BtgZI	GCGATG	1 cut(s)	371
BtrI	CACGTC	1 cut(s)	1079
BtsCI	GGATG	3 cut(s)	478, 874, 1121
BtsIMutI	CAGTG	1 cut(s)	1085
BveI	ACCTGC	2 cut(s)	187, 965
Cac8I	GCNNGC	1 cut(s)	918
CfoI	GCGC	1 cut(s)	464
Cfr10I	RCCGGY	1 cut(s)	340
Cfr13I	GGNCC	3 cut(s)	247, 281, 575
CseI	GACGC	1 cut(s)	468
Csp6I	GTAC	3 cut(s)	439, 522, 763
CspCI	CAANNNNNGTGG	2 cut(s)	567, 602
CviAII	CATG	4 cut(s)	515, 780, 801, 991
CviQI	GTAC	3 cut(s)	439, 522, 763
DdeI	CTNAG	3 cut(s)	536, 791, 1139
DpnI	GATC	3 cut(s)	425, 664, 1031
DpnII	GATC	3 cut(s)	423, 662, 1029
EaeI	YGGCCR	1 cut(s)	604
Eam1104I	CTCTTC	1 cut(s)	1128
EarI	CTCTTC	1 cut(s)	1128
Eco31I	GGTCTC	1 cut(s)	628
Eco47I	GGWCC	2 cut(s)	247, 575
Eco57I	CTGAAG	1 cut(s)	297
Eco72I	CACGTG	1 cut(s)	1112
Eco88I	CYCGRG	1 cut(s)	1180
EcoO109I	RGGNCCY	1 cut(s)	247
EcoRII	CCWGG	1 cut(s)	618
EcoT22I	ATGCAT	2 cut(s)	330, 516
Esp3I	CGTCTC	1 cut(s)	451
FaeI	CATG	4 cut(s)	518, 783, 804, 994
FatI	CATG	4 cut(s)	514, 779, 800, 990
FauI	CCCGC	1 cut(s)	54
FauNDI	CATATG	1 cut(s)	651
Fnu4HI	GCNGC	5 cut(s)	59, 153, 477, 729, 798
FokI	GGATG	3 cut(s)	485, 881, 1128
Fsp4HI	GCNGC	5 cut(s)	59, 153, 477, 729, 798
FspBI	CTAG	3 cut(s)	1026, 1044, 1095
GlaI	GCGC	1 cut(s)	463
GluI	GCNGC	5 cut(s)	59, 153, 477, 729, 798
GsaI	CCCAGC	2 cut(s)	492, 1037
HaeIII	GGCC	2 cut(s)	282, 606
HapII	CCGG	2 cut(s)	107, 341
HgaI	GACGC	1 cut(s)	468
HhaI	GCGC	1 cut(s)	464
Hin1II	CATG	4 cut(s)	518, 783, 804, 994
Hin6I	GCGC	1 cut(s)	462
HinP1I	GCGC	1 cut(s)	462
HincII	GTYRAC	1 cut(s)	598
HindII	GTYRAC	1 cut(s)	598
HindIII	AAGCTT	2 cut(s)	682, 960
HinfI	GANTC	6 cut(s)	89, 394, 641, 940, 994, 1155
HpaII	CCGG	2 cut(s)	107, 341
HphI	GGTGA	1 cut(s)	64
Hpy166II	GTNNAC	2 cut(s)	598, 763
Hpy188I	TCNGA	5 cut(s)	277, 415, 1083, 1154, 1160
Hpy188III	TCNNGA	4 cut(s)	398, 645, 1180, 1182
Hpy8I	GTNNAC	2 cut(s)	598, 763
Hpy99I	CGWCG	1 cut(s)	1083
HpyAV	CCTTC	2 cut(s)	260, 272
HpyCH4III	ACNGT	5 cut(s)	38, 190, 290, 521, 735
HpyCH4IV	ACGT	4 cut(s)	97, 585, 1078, 1111
HpyF10VI	GCNNNNNNNGC	2 cut(s)	158, 485
HpyF3I	CTNAG	3 cut(s)	536, 791, 1139
HpySE526I	ACGT	4 cut(s)	97, 585, 1078, 1111
Hsp92II	CATG	4 cut(s)	518, 783, 804, 994
HspAI	GCGC	1 cut(s)	462
Kzo9I	GATC	3 cut(s)	423, 662, 1029
LguI	GCTCTTC	1 cut(s)	1128
LmnI	GCTCC	2 cut(s)	229, 742
Lsp1109I	GCAGC	5 cut(s)	70, 139, 463, 715, 809
LweI	GCATC	6 cut(s)	162, 348, 463, 501, 641, 961
MaeI	CTAG	3 cut(s)	1026, 1044, 1095
MaeII	ACGT	4 cut(s)	97, 585, 1078, 1111
MaeIII	GTNAC	1 cut(s)	311
MalI	GATC	3 cut(s)	425, 664, 1031
MboI	GATC	3 cut(s)	423, 662, 1029
MboII	GAAGA	3 cut(s)	403, 914, 1115
MflI	RGATCY	1 cut(s)	1029
MhlI	GDGCHC	1 cut(s)	1123
MlsI	TGGCCA	1 cut(s)	606
MluCI	AATT	3 cut(s)	348, 753, 905
MluNI	TGGCCA	1 cut(s)	606
MlyI	GAGTC	2 cut(s)	650, 1164
MmeI	TCCRAC	3 cut(s)	602, 912, 1061
MnlI	CCTC	9 cut(s)	79, 172, 198, 683, 700, 832, 855, 930, 1162
Mox20I	TGGCCA	1 cut(s)	606
Mph1103I	ATGCAT	2 cut(s)	330, 516
MscI	TGGCCA	1 cut(s)	606
MseI	TTAA	5 cut(s)	849, 863, 882, 894, 980
MslI	CAYNNNNRTG	1 cut(s)	1114
Msp20I	TGGCCA	1 cut(s)	606
MspA1I	CMGCKG	1 cut(s)	61
MspI	CCGG	2 cut(s)	107, 341
MspR9I	CCNGG	2 cut(s)	107, 620
Mva1269I	GAATGC	2 cut(s)	330, 1096
MvaI	CCWGG	1 cut(s)	620
MvnI	CGCG	1 cut(s)	462
MwoI	GCNNNNNNNGC	2 cut(s)	158, 485
NciI	CCSGG	1 cut(s)	107
NdeI	CATATG	1 cut(s)	651
NdeII	GATC	3 cut(s)	423, 662, 1029
NlaIII	CATG	4 cut(s)	518, 783, 804, 994
NlaIV	GGNNCC	3 cut(s)	231, 843, 1031
NsiI	ATGCAT	2 cut(s)	330, 516
NspI	RCATGY	2 cut(s)	783, 804
NspV	TTCGAA	1 cut(s)	253
PaeR7I	CTCGAG	1 cut(s)	1180
PciSI	GCTCTTC	1 cut(s)	1128
PctI	GAATGC	2 cut(s)	330, 1096
PfeI	GAWTC	4 cut(s)	89, 394, 940, 994
PflMI	CCANNNNNTGG	1 cut(s)	290
PkrI	GCNGC	5 cut(s)	60, 154, 478, 730, 799
PleI	GAGTC	2 cut(s)	649, 1163
PmaCI	CACGTG	1 cut(s)	1112
PmlI	CACGTG	1 cut(s)	1112
PpsI	GAGTC	2 cut(s)	649, 1163
Ppu21I	YACGTR	2 cut(s)	586, 1112
PpuMI	RGGWCCY	1 cut(s)	247
Psp5II	RGGWCCY	1 cut(s)	247
Psp6I	CCWGG	1 cut(s)	618
PspCI	CACGTG	1 cut(s)	1112
PspFI	CCCAGC	2 cut(s)	488, 1033
PspGI	CCWGG	1 cut(s)	618
PspN4I	GGNNCC	3 cut(s)	231, 843, 1031
PspPI	GGNCC	3 cut(s)	247, 281, 575
PspPPI	RGGWCCY	1 cut(s)	247
PsuI	RGATCY	1 cut(s)	1029
RsaI	GTAC	3 cut(s)	440, 523, 764
RsaNI	GTAC	3 cut(s)	439, 522, 763
RseI	CAYNNNNRTG	1 cut(s)	1114
SapI	GCTCTTC	1 cut(s)	1128
SaqAI	TTAA	5 cut(s)	849, 863, 882, 894, 980
SatI	GCNGC	5 cut(s)	59, 153, 477, 729, 798
Sau3AI	GATC	3 cut(s)	423, 662, 1029
Sau96I	GGNCC	3 cut(s)	247, 281, 575
SchI	GAGTC	2 cut(s)	650, 1164
ScrFI	CCNGG	2 cut(s)	107, 620
SduI	GDGCHC	1 cut(s)	1123
SfaNI	GCATC	6 cut(s)	162, 348, 463, 501, 641, 961
SfcI	CTRYAG	1 cut(s)	1002
Sfr274I	CTCGAG	1 cut(s)	1180
SfuI	TTCGAA	1 cut(s)	253
SinI	GGWCC	2 cut(s)	247, 575
SlaI	CTCGAG	1 cut(s)	1180
SmiMI	CAYNNNNRTG	1 cut(s)	1114
SmlI	CTYRAG	1 cut(s)	1180
SmoI	CTYRAG	1 cut(s)	1180
Sse9I	AATT	3 cut(s)	348, 753, 905
SsiI	CCGC	4 cut(s)	47, 61, 836, 984
SspI	AATATT	1 cut(s)	853
SspMI	CTAG	3 cut(s)	1026, 1044, 1095
StyD4I	CCNGG	2 cut(s)	105, 618
TaaI	ACNGT	5 cut(s)	38, 190, 290, 521, 735
TaiI	ACGT	4 cut(s)	100, 588, 1081, 1114
TaqI	TCGA	4 cut(s)	92, 185, 253, 1181
TasI	AATT	3 cut(s)	348, 753, 905
TatI	WGTACW	2 cut(s)	521, 762
TfiI	GAWTC	4 cut(s)	89, 394, 940, 994
Tru1I	TTAA	5 cut(s)	849, 863, 882, 894, 980
Tru9I	TTAA	5 cut(s)	849, 863, 882, 894, 980
TscAI	CASTG	1 cut(s)	1092
TseI	GCWGC	5 cut(s)	58, 152, 476, 728, 797
TspDTI	ATGAA	2 cut(s)	880, 986
TspRI	CASTG	1 cut(s)	1092
Van91I	CCANNNNNTGG	1 cut(s)	290
VpaK11BI	GGWCC	2 cut(s)	247, 575
XapI	RAATTY	1 cut(s)	905
XceI	RCATGY	2 cut(s)	783, 804
XhoI	CTCGAG	1 cut(s)	1180
XspI	CTAG	3 cut(s)	1026, 1044, 1095
Zsp2I	ATGCAT	2 cut(s)	330, 516

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.