Rmu_co8472331.1_g000001

GDP-fucose protein O-fucosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8472331.1
OG0013338
Physical Location & Seq
Reverse (-)
394 .. 1737
1344 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8472331.1_g000001.1.cds

Sequence Viewer

Length: 1344 bp
atggaccggccggactcctcctcttccgacgacgacgacgatcgccagaacctaatcgaccagaacgagcgcaagcagctccccagccctcgatccgccaccactttccaaatcgacgacggcgacgtcgaccaccaccgccaccaccgagaaatacgacggcgtttcgcctccctcaagctcagcgacttgttcaacaaacgcttcctcatcttcttcatcttcatccctctcttcgtcctcatcctcttcttcaccaccgacatcaagagcctcttcttctcccgcctctccgtccctctctccgattccctctccgataagctccgcgagtccgaactgcgagctctcttcttgctccgccagcagcagctcggtctcttcggcctctggaaccaaacgcatcccaattccacttcgaatcactccaattctgaactccaggatttcaaatccgccgttttgaggcagatttcgttgaataaggagattcagcaggtgttgttagctccgcatggctccggcaactcatcatcggaatccgaagatttccgggatccgagcctcctcggcgatcggtgtggagtagtggaccagcggttttcggagagaagaacaattgagtggaagcctaattccgataagtacttgttggcgatttgcgtttcgggccaaatgtccaaccatttgatctgcttagagaagcacatgttcttcgcagcattgctgaaccgggttttggtgattcctagccctaaagtggatttccagtacagcactgtgttggacattgagcacattaacaaatgcattgggagaaaagttgtggtgactttcgaggaattggccgaggagaagaagagacacatccacattgataggttcatttgctatttttcgaagccgacgctttgctatgtggatgatgagcatctcaagaagctgaaggcattgggggtttcgttcaagagccgtgagcctgcttggggggaagatgtgaagaagccgagcaagaagactgtgcaggatgttcagtccaagttttcgagtggtgatgatgtaattgccattggggatgttttctttgctgatttggagaaagattgggtgatgcagccgggtggtcctctggctcacaaatgcaagactcttgttgagccgagtcggcttataatgcttactgcccagcgtttcattcagacgttcctggggaaaaatttcatggcactacatttccggcggcatggcttcttgaagttctggtacactttctttgctttgccttaccctgtttcattctttcgcctatttggttttgcttactcttgttcaaagtatgtttag

Protein Analysis

447

Amino Acids

51.81

Weight (kDa)

8.76

Isoelectric Point (pI)

47.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013338)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G50420
fragaria_vesca FvH4_6g36080
malus_domestica MD09G1171900.v1.1 MD17G1155100.v1.1
prunus_persica Prupe.3G030300_v2.0.a1
pyrus_communis pycom09g08920 pycom17g14790
rosa_chinensis RchiOBHm_Chr2g0148131
rosa_laevigata RLG00000020319
rosa_multiflora Rmu_co8472331.1_g000001 Rmu_sc0001516.1_g000096 Rmu_sc0012028.1_g000005
rosa_rugosa Rorug02G0403900
rosa_samantha Rh2AG462400 Rh2BG475400 Rh2CG449200 Rh2DG484100
rosa_wichuraiana Rw2G037690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1172
AarI CACCTGC 1 cut(s) 487
AasI GACNNNNNNGTC 1 cut(s) 125
AatII GACGTC 1 cut(s) 129
Acc36I ACCTGC 1 cut(s) 487
AccI GTMKAC 1 cut(s) 129
AccII CGCG 1 cut(s) 330
AciI CCGC 9 cut(s) 96, 139, 286, 328, 361, 456, 512, 598, 1240
AclWI GGATC 3 cut(s) 87, 551, 564
AcoI YGGCCR 2 cut(s) 8, 846
AcsI RAATTY 1 cut(s) 1216
AcuI CTGAAG 1 cut(s) 965
AcyI GRCGYC 1 cut(s) 126
AfaI GTAC 3 cut(s) 647, 773, 1265
AfiI CCNNNNNNNGG 4 cut(s) 465, 739, 760, 986
AflIII ACRYGT 1 cut(s) 708
AgsI TTSAA 6 cut(s) 196, 451, 481, 967, 1255, 1332
AjnI CCWGG 2 cut(s) 441, 1206
AjuI GAANNNNNNNTTGG 2 cut(s) 722, 754
AluBI AGCT 7 cut(s) 79, 181, 325, 347, 373, 509, 943
AluI AGCT 7 cut(s) 79, 181, 325, 347, 373, 509, 943
Alw21I GWGCWC 2 cut(s) 349, 798
Alw26I GTCTC 2 cut(s) 383, 856
AlwI GGATC 3 cut(s) 87, 551, 564
AoxI GGCC 4 cut(s) 8, 385, 670, 846
ApeKI GCWGC 5 cut(s) 76, 367, 370, 719, 1114
ApoI RAATTY 1 cut(s) 1216
Asp700I GAANNNNTTC 1 cut(s) 1217
AspLEI GCGC 1 cut(s) 72
AspS9I GGNCC 4 cut(s) 4, 592, 670, 1124
AsuC2I CCSGG 3 cut(s) 554, 734, 1119
AsuHPI GGTGA 5 cut(s) 247, 754, 841, 1064, 1120
AsuII TTCGAA 2 cut(s) 419, 899
AvaII GGWCC 3 cut(s) 4, 592, 1124
BamHI GGATCC 1 cut(s) 556
BanII GRGCYC 1 cut(s) 349
BarI GAAGNNNNNNTAC 2 cut(s) 1247, 1279
BbsI GAAGAC 1 cut(s) 1022
Bbv12I GWGCWC 2 cut(s) 349, 798
BbvI GCAGC 5 cut(s) 88, 379, 382, 731, 1126
BceAI ACGGC 4 cut(s) 136, 176, 443, 957
BciT130I CCWGG 2 cut(s) 443, 1208
BcnI CCSGG 3 cut(s) 554, 734, 1119
BcoDI GTCTC 2 cut(s) 383, 856
BfaI CTAG 1 cut(s) 750
BfuAI ACCTGC 1 cut(s) 487
BglI GCCNNNNNGGC 2 cut(s) 570, 1165
BisI GCNGC 6 cut(s) 77, 368, 371, 720, 1115, 1241
BlpI GCTNAGC 1 cut(s) 182
BlsI GCNGC 6 cut(s) 78, 369, 372, 721, 1116, 1242
BmcAI AGTACT 1 cut(s) 647
Bme1390I CCNGG 5 cut(s) 443, 554, 734, 1119, 1208
Bme18I GGWCC 3 cut(s) 4, 592, 1124
BmgT120I GGNCC 4 cut(s) 4, 592, 670, 1124
BmiI GGNNCC 3 cut(s) 395, 520, 558
BmrFI CCNGG 5 cut(s) 443, 554, 734, 1119, 1208
BmsI GCATC 3 cut(s) 412, 940, 1101
BpiI GAAGAC 1 cut(s) 1022
BpmI CTGGAG 1 cut(s) 425
Bpu1102I GCTNAGC 1 cut(s) 182
Bpu14I TTCGAA 2 cut(s) 419, 899
BpuEI CTTGAG 2 cut(s) 161, 920
BpuMI CCSGG 3 cut(s) 554, 734, 1119
BsaBI GATNNNNATC 1 cut(s) 930
BsaHI GRCGYC 1 cut(s) 126
BsaI GGTCTC 1 cut(s) 383
BsaJI CCNNGG 3 cut(s) 568, 849, 1207
Bsc4I CCNNNNNNNGG 4 cut(s) 465, 739, 760, 986
Bse118I RCCGGY 1 cut(s) 6
Bse1I ACTGG 1 cut(s) 769
Bse3DI GCAATG 1 cut(s) 722
Bse8I GATNNNNATC 1 cut(s) 930
BseBI CCWGG 2 cut(s) 443, 1208
BseDI CCNNGG 3 cut(s) 568, 849, 1207
BseGI GGATG 7 cut(s) 225, 243, 403, 867, 928, 1033, 1081
BseJI GATNNNNATC 1 cut(s) 930
BseLI CCNNNNNNNGG 4 cut(s) 465, 739, 760, 986
BseMI GCAATG 1 cut(s) 722
BseMII CTCAG 1 cut(s) 196
BseNI ACTGG 1 cut(s) 769
BseRI GAGGAG 4 cut(s) 7, 10, 557, 866
BseX3I CGGCCG 1 cut(s) 8
BseXI GCAGC 5 cut(s) 88, 379, 382, 731, 1126
BseYI CCCAGC 2 cut(s) 83, 1185
BsgI GTGCAG 1 cut(s) 1043
Bsh1236I CGCG 1 cut(s) 330
Bsh1285I CGRYCG 3 cut(s) 11, 43, 577
BshFI GGCC 4 cut(s) 10, 387, 672, 848
BsiEI CGRYCG 3 cut(s) 11, 43, 577
BsiHKAI GWGCWC 2 cut(s) 349, 798
BsiSI CCGG 7 cut(s) 7, 11, 522, 553, 733, 1118, 1237
BslFI GGGAC 1 cut(s) 281
BslI CCNNNNNNNGG 4 cut(s) 465, 739, 760, 986
BsmAI GTCTC 2 cut(s) 383, 856
BsmFI GGGAC 1 cut(s) 281
BsnI GGCC 4 cut(s) 10, 387, 672, 848
Bso31I GGTCTC 1 cut(s) 383
Bsp119I TTCGAA 2 cut(s) 419, 899
Bsp1286I GDGCHC 2 cut(s) 349, 798
Bsp143I GATC 5 cut(s) 40, 92, 556, 574, 690
Bsp1720I GCTNAGC 1 cut(s) 182
BspACI CCGC 9 cut(s) 96, 139, 286, 328, 361, 456, 512, 598, 1240
BspANI GGCC 4 cut(s) 10, 387, 672, 848
BspCNI CTCAG 1 cut(s) 195
BspFNI CGCG 1 cut(s) 330
BspLI GGNNCC 3 cut(s) 395, 520, 558
BspMI ACCTGC 1 cut(s) 487
BspPI GGATC 3 cut(s) 87, 551, 564
BspT104I TTCGAA 2 cut(s) 419, 899
BspTNI GGTCTC 1 cut(s) 383
BsrDI GCAATG 1 cut(s) 722
BsrFI RCCGGY 1 cut(s) 6
BsrI ACTGG 1 cut(s) 769
BssAI RCCGGY 1 cut(s) 6
BssECI CCNNGG 3 cut(s) 568, 849, 1207
BssMI GATC 5 cut(s) 40, 92, 556, 574, 690
BssNI GRCGYC 1 cut(s) 126
Bst2UI CCWGG 2 cut(s) 443, 1208
Bst4CI ACNGT 2 cut(s) 781, 1021
Bst6I CTCTTC 7 cut(s) 28, 239, 254, 281, 356, 386, 854
BstACI GRCGYC 1 cut(s) 126
BstBI TTCGAA 2 cut(s) 419, 899
BstC8I GCNNGC 4 cut(s) 74, 345, 365, 981
BstDEI CTNAG 2 cut(s) 182, 697
BstF5I GGATG 7 cut(s) 225, 243, 403, 867, 928, 1033, 1081
BstFNI CGCG 1 cut(s) 330
BstHHI GCGC 1 cut(s) 72
BstKTI GATC 5 cut(s) 43, 95, 559, 577, 693
BstMAI GTCTC 2 cut(s) 383, 856
BstMBI GATC 5 cut(s) 40, 92, 556, 574, 690
BstMCI CGRYCG 3 cut(s) 11, 43, 577
BstMWI GCNNNNNNNGC 6 cut(s) 76, 364, 570, 669, 1165, 1174
BstNI CCWGG 2 cut(s) 443, 1208
BstNSI RCATGY 1 cut(s) 712
BstSCI CCNGG 5 cut(s) 441, 552, 732, 1117, 1206
BstUI CGCG 1 cut(s) 330
BstV1I GCAGC 5 cut(s) 88, 379, 382, 731, 1126
BstV2I GAAGAC 1 cut(s) 1022
BstX2I RGATCY 1 cut(s) 556
BstYI RGATCY 1 cut(s) 556
BstZI CGGCCG 1 cut(s) 8
BsuRI GGCC 4 cut(s) 10, 387, 672, 848
BtsCI GGATG 7 cut(s) 225, 243, 403, 867, 928, 1033, 1081
BtsIMutI CAGTG 1 cut(s) 777
BveI ACCTGC 1 cut(s) 487
Cac8I GCNNGC 4 cut(s) 74, 345, 365, 981
CfoI GCGC 1 cut(s) 72
Cfr10I RCCGGY 1 cut(s) 6
Cfr13I GGNCC 4 cut(s) 4, 592, 670, 1124
CseI GACGC 1 cut(s) 916
Csp6I GTAC 3 cut(s) 646, 772, 1264
CviAII CATG 4 cut(s) 515, 709, 1222, 1244
CviQI GTAC 3 cut(s) 646, 772, 1264
DdeI CTNAG 2 cut(s) 182, 697
DpnI GATC 5 cut(s) 42, 94, 558, 576, 692
DpnII GATC 5 cut(s) 40, 92, 556, 574, 690
DrdI GACNNNNNNGTC 1 cut(s) 125
DseDI GACNNNNNNGTC 1 cut(s) 125
EaeI YGGCCR 2 cut(s) 8, 846
EagI CGGCCG 1 cut(s) 8
Eam1104I CTCTTC 7 cut(s) 28, 239, 254, 281, 356, 386, 854
EarI CTCTTC 7 cut(s) 28, 239, 254, 281, 356, 386, 854
EciI GGCGGA 3 cut(s) 85, 350, 445
Ecl136II GAGCTC 1 cut(s) 347
EclXI CGGCCG 1 cut(s) 8
Eco24I GRGCYC 1 cut(s) 349
Eco31I GGTCTC 1 cut(s) 383
Eco47I GGWCC 3 cut(s) 4, 592, 1124
Eco52I CGGCCG 1 cut(s) 8
Eco53kI GAGCTC 1 cut(s) 347
Eco57I CTGAAG 1 cut(s) 965
EcoICRI GAGCTC 1 cut(s) 347
EcoRII CCWGG 2 cut(s) 441, 1206
EcoT22I ATGCAT 1 cut(s) 812
EcoT38I GRGCYC 1 cut(s) 349
FaeI CATG 4 cut(s) 518, 712, 1225, 1247
FaiI YATR 7 cut(s) 516, 710, 918, 1172, 1223, 1245, 1338
FalI AAGNNNNNCTT 2 cut(s) 260, 292
FaqI GGGAC 1 cut(s) 281
FatI CATG 4 cut(s) 514, 708, 1221, 1243
FauI CCCGC 1 cut(s) 293
FblI GTMKAC 1 cut(s) 129
Fnu4HI GCNGC 6 cut(s) 77, 368, 371, 720, 1115, 1241
FokI GGATG 7 cut(s) 212, 230, 390, 854, 935, 1040, 1088
FriOI GRGCYC 1 cut(s) 349
Fsp4HI GCNGC 6 cut(s) 77, 368, 371, 720, 1115, 1241
FspBI CTAG 1 cut(s) 750
GlaI GCGC 1 cut(s) 71
GluI GCNGC 6 cut(s) 77, 368, 371, 720, 1115, 1241
GsaI CCCAGC 2 cut(s) 87, 1189
GsuI CTGGAG 1 cut(s) 425
HaeIII GGCC 4 cut(s) 10, 387, 672, 848
HapII CCGG 7 cut(s) 7, 11, 522, 553, 733, 1118, 1237
HgaI GACGC 1 cut(s) 916
HhaI GCGC 1 cut(s) 72
Hin1I GRCGYC 1 cut(s) 126
Hin1II CATG 4 cut(s) 518, 712, 1225, 1247
Hin6I GCGC 1 cut(s) 70
HinP1I GCGC 1 cut(s) 70
HincII GTYRAC 1 cut(s) 130
HindII GTYRAC 1 cut(s) 130
HinfI GANTC 9 cut(s) 14, 308, 332, 421, 490, 539, 745, 1147, 1162
HpaII CCGG 7 cut(s) 7, 11, 522, 553, 733, 1118, 1237
HphI GGTGA 5 cut(s) 247, 754, 841, 1064, 1120
Hpy166II GTNNAC 3 cut(s) 130, 592, 1266
Hpy188III TCNNGA 5 cut(s) 268, 391, 937, 967, 1252
Hpy8I GTNNAC 3 cut(s) 130, 592, 1266
HpyAV CCTTC 1 cut(s) 940
HpyCH4III ACNGT 2 cut(s) 781, 1021
HpyCH4IV ACGT 2 cut(s) 126, 1202
HpyCH4V TGCA 4 cut(s) 810, 1024, 1114, 1143
HpyF10VI GCNNNNNNNGC 6 cut(s) 76, 364, 570, 669, 1165, 1174
HpyF3I CTNAG 2 cut(s) 182, 697
HpySE526I ACGT 2 cut(s) 126, 1202
Hsp92I GRCGYC 1 cut(s) 126
Hsp92II CATG 4 cut(s) 518, 712, 1225, 1247
HspAI GCGC 1 cut(s) 70
Kzo9I GATC 5 cut(s) 40, 92, 556, 574, 690
LmnI GCTCC 5 cut(s) 84, 330, 363, 514, 524
Lsp1109I GCAGC 5 cut(s) 88, 379, 382, 731, 1126
LweI GCATC 3 cut(s) 412, 940, 1101
MaeI CTAG 1 cut(s) 750
MaeII ACGT 2 cut(s) 126, 1202
MaeIII GTNAC 1 cut(s) 829
MalI GATC 5 cut(s) 42, 94, 558, 576, 692
MboI GATC 5 cut(s) 40, 92, 556, 574, 690
MfeI CAATTG 1 cut(s) 618
MflI RGATCY 1 cut(s) 556
MhlI GDGCHC 2 cut(s) 349, 798
MluCI AATT 7 cut(s) 409, 430, 618, 634, 842, 1062, 1216
MlyI GAGTC 4 cut(s) 8, 341, 1141, 1171
MmeI TCCRAC 3 cut(s) 51, 705, 765
Mph1103I ATGCAT 1 cut(s) 812
MroXI GAANNNNTTC 1 cut(s) 1217
MseI TTAA 1 cut(s) 801
MspA1I CMGCKG 1 cut(s) 598
MspI CCGG 7 cut(s) 7, 11, 522, 553, 733, 1118, 1237
MspR9I CCNGG 5 cut(s) 443, 554, 734, 1119, 1208
MunI CAATTG 1 cut(s) 618
MvaI CCWGG 2 cut(s) 443, 1208
MvnI CGCG 1 cut(s) 330
MwoI GCNNNNNNNGC 6 cut(s) 76, 364, 570, 669, 1165, 1174
NciI CCSGG 3 cut(s) 554, 734, 1119
NdeII GATC 5 cut(s) 40, 92, 556, 574, 690
NlaIII CATG 4 cut(s) 518, 712, 1225, 1247
NlaIV GGNNCC 3 cut(s) 395, 520, 558
NmeAIII GCCGAG 4 cut(s) 549, 874, 1032, 1185
NmuCI GTSAC 1 cut(s) 829
NsiI ATGCAT 1 cut(s) 812
NspI RCATGY 1 cut(s) 712
NspV TTCGAA 2 cut(s) 419, 899
PaqCI CACCTGC 1 cut(s) 487
PciI ACATGT 1 cut(s) 708
PcsI WCGNNNNNNNCGW 5 cut(s) 36, 63, 120, 123, 126
PdmI GAANNNNTTC 1 cut(s) 1217
PfeI GAWTC 5 cut(s) 308, 421, 490, 539, 745
PfoI TCCNGGA 2 cut(s) 441, 552
PkrI GCNGC 6 cut(s) 78, 369, 372, 721, 1116, 1242
Ple19I CGATCG 2 cut(s) 43, 577
PleI GAGTC 4 cut(s) 8, 340, 1141, 1170
PpsI GAGTC 4 cut(s) 8, 340, 1141, 1170
PscI ACATGT 1 cut(s) 708
PsiI TTATAA 1 cut(s) 1172
Psp124BI GAGCTC 1 cut(s) 349
Psp6I CCWGG 2 cut(s) 441, 1206
PspFI CCCAGC 2 cut(s) 83, 1185
PspGI CCWGG 2 cut(s) 441, 1206
PspN4I GGNNCC 3 cut(s) 395, 520, 558
PspPI GGNCC 4 cut(s) 4, 592, 670, 1124
PsuI RGATCY 1 cut(s) 556
PvuI CGATCG 2 cut(s) 43, 577
RsaI GTAC 3 cut(s) 647, 773, 1265
RsaNI GTAC 3 cut(s) 646, 772, 1264
SacI GAGCTC 1 cut(s) 349
SalI GTCGAC 1 cut(s) 128
SaqAI TTAA 1 cut(s) 801
SatI GCNGC 6 cut(s) 77, 368, 371, 720, 1115, 1241
Sau3AI GATC 5 cut(s) 40, 92, 556, 574, 690
Sau96I GGNCC 4 cut(s) 4, 592, 670, 1124
ScaI AGTACT 1 cut(s) 647
SchI GAGTC 4 cut(s) 8, 341, 1141, 1171
ScrFI CCNGG 5 cut(s) 443, 554, 734, 1119, 1208
SduI GDGCHC 2 cut(s) 349, 798
SfaNI GCATC 3 cut(s) 412, 940, 1101
SfuI TTCGAA 2 cut(s) 419, 899
SinI GGWCC 3 cut(s) 4, 592, 1124
SmlI CTYRAG 2 cut(s) 176, 935
SmoI CTYRAG 2 cut(s) 176, 935
Sse9I AATT 7 cut(s) 409, 430, 618, 634, 842, 1062, 1216
SsiI CCGC 9 cut(s) 96, 139, 286, 328, 361, 456, 512, 598, 1240
SspMI CTAG 1 cut(s) 750
SstI GAGCTC 1 cut(s) 349
StyD4I CCNGG 5 cut(s) 441, 552, 732, 1117, 1206
TaaI ACNGT 2 cut(s) 781, 1021
TaiI ACGT 2 cut(s) 129, 1205
TaqI TCGA 8 cut(s) 57, 91, 114, 129, 419, 837, 899, 1046
TaqII GACCGA 1 cut(s) 365
TasI AATT 7 cut(s) 409, 430, 618, 634, 842, 1062, 1216
TatI WGTACW 2 cut(s) 645, 771
TauI GCSGC 1 cut(s) 1243
TfiI GAWTC 5 cut(s) 308, 421, 490, 539, 745
Tru1I TTAA 1 cut(s) 801
Tru9I TTAA 1 cut(s) 801
TscAI CASTG 1 cut(s) 784
TseFI GTSAC 1 cut(s) 829
TseI GCWGC 5 cut(s) 76, 367, 370, 719, 1114
Tsp45I GTSAC 1 cut(s) 829
TspDTI ATGAA 6 cut(s) 208, 214, 874, 1183, 1210, 1284
TspGWI ACGGA 1 cut(s) 283
TspRI CASTG 1 cut(s) 784
VpaK11BI GGWCC 3 cut(s) 4, 592, 1124
XapI RAATTY 1 cut(s) 1216
XceI RCATGY 1 cut(s) 712
XmiI GTMKAC 1 cut(s) 129
XmnI GAANNNNTTC 1 cut(s) 1217
XspI CTAG 1 cut(s) 750
ZraI GACGTC 1 cut(s) 127
ZrmI AGTACT 1 cut(s) 647
Zsp2I ATGCAT 1 cut(s) 812
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.