Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8498985.1

Orthogroup ID

OG0007368

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2213

Gene Structure 2213 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8498985.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 893 bp

aaactgatccgcactggtggaggacaatgctgtatatcgcaagtgtccctggattcgtccttgcacttggaatgcaatttgctgcagatagcccccgttggctatgcaaggttgggagattgagcaatgctaaagaagtaatcaaaaatgtttggggagcatctgaagttgaaaaggcaattgaagaatttcaggcagtaatcaagaatgatggtagtgatttggaaagcagttggttggacctattggaagagccaaattctagagttgcatgcataggaggtgccctttttgtatttcaacagttcgcgggtataaatggggttctttacttttcatcattgacttttcaagatgttggaattacaagtagtgctttagcaagcttgcttattggtgttaccaacttagcaggagcactttgtgctttgtacttgattgataaacaggggaggcagaagctcttgattggaagttacttaggaatggcagtttcaatgtttcttgtggtctatgcgatcagttttccactagatgaggaactagggcacaacttatcaatactaggaacagtcatgtacatatttacctttgcaataggagctggcccggtcactggacttatcataccagaactcagcagtagcagatcacgggggaagataatgggattcagtttttctgctcactgggtttgcaacttcttggtgggtttatttttccttgacttggtggagaaattcggagttgctccagtttatggtacctttggcggagtttccttgttggcagcaatattttctacctactttatagttgaaaccaaggggcgctcccttgaggatatagaaatgtcactaagctcagatttcattgccagaggcaagaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

296

Amino Acids

32.17

Weight (kDa)

5.29

Isoelectric Point (pI)

35.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007368)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05030 AT1G05030
fragaria_vesca	FvH4_6g42430 FvH4_6g42430 FvH4_6g42430 FvH4_6g42430 FvH4_6g42430 FvH4_6g42430 FvH4_6g42430
malus_domestica	MD17G1103300.v1.1
prunus_persica	Prupe.3G211400_v2.0.a1 Prupe.3G211400_v2.0.a1 Prupe.3G211400_v2.0.a1
pyrus_communis	pycom17g09760
rosa_chinensis	RchiOBHm_Chr2g0158321
rosa_laevigata	RLG00000021076
rosa_multiflora	Rmu_co8498985.1_g000001 Rmu_sc0039627.1_g000001
rosa_roxburghii	Rroxscaffold_2G00091490
rosa_rugosa	Rorug02G0467300
rosa_samantha	Rh2AG533200 Rh2BG547000 Rh2CG517100 Rh2DG556000
rosa_wichuraiana	Rw2G044150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	763
AccB1I	GGYRCC	2 cut(s)	283, 763
AccB7I	CCANNNNNTGG	1 cut(s)	760
AccII	CGCG	1 cut(s)	310
AciI	CCGC	3 cut(s)	10, 310, 773
AcsI	RAATTY	3 cut(s)	187, 258, 739
AcuI	CTGAAG	1 cut(s)	185
AdeI	CACNNNGTG	1 cut(s)	424
AfaI	GTAC	3 cut(s)	433, 580, 765
AfiI	CCNNNNNNNGG	3 cut(s)	616, 729, 760
AgsI	TTSAA	6 cut(s)	172, 184, 301, 352, 497, 820
AjnI	CCWGG	1 cut(s)	48
AluBI	AGCT	4 cut(s)	386, 462, 604, 863
AluI	AGCT	4 cut(s)	386, 462, 604, 863
Alw21I	GWGCWC	1 cut(s)	420
AoxI	GGCC	1 cut(s)	606
ApeKI	GCWGC	2 cut(s)	82, 790
ApoI	RAATTY	3 cut(s)	187, 258, 739
Asp700I	GAANNNNTTC	1 cut(s)	188
Asp718I	GGTACC	1 cut(s)	763
AspLEI	GCGC	1 cut(s)	833
AspS9I	GGNCC	2 cut(s)	240, 607
AsuC2I	CCSGG	1 cut(s)	610
AvaII	GGWCC	1 cut(s)	240
BaeGI	GKGCMC	2 cut(s)	288, 551
BanI	GGYRCC	2 cut(s)	283, 763
Bbv12I	GWGCWC	1 cut(s)	420
BbvI	GCAGC	2 cut(s)	69, 802
BccI	CCATC	1 cut(s)	205
BciT130I	CCWGG	1 cut(s)	50
BcnI	CCSGG	1 cut(s)	610
BfaI	CTAG	4 cut(s)	263, 532, 544, 565
BfmI	CTRYAG	1 cut(s)	83
BfoI	RGCGCY	1 cut(s)	834
BisI	GCNGC	2 cut(s)	83, 791
BlsI	GCNGC	2 cut(s)	84, 792
Bme1390I	CCNGG	2 cut(s)	50, 610
Bme18I	GGWCC	1 cut(s)	240
BmgT120I	GGNCC	2 cut(s)	240, 607
BmiI	GGNNCC	2 cut(s)	285, 765
BmrFI	CCNGG	2 cut(s)	50, 610
BmrI	ACTGGG	1 cut(s)	699
BmsI	GCATC	1 cut(s)	169
BmuI	ACTGGG	1 cut(s)	699
BpmI	CTGGAG	1 cut(s)	737
BpuEI	CTTGAG	1 cut(s)	859
BpuMI	CCSGG	1 cut(s)	610
BsaJI	CCNNGG	2 cut(s)	48, 824
Bsc4I	CCNNNNNNNGG	3 cut(s)	616, 729, 760
Bse1I	ACTGG	4 cut(s)	19, 621, 694, 754
Bse3DI	GCAATG	2 cut(s)	132, 872
BseBI	CCWGG	1 cut(s)	50
BseDI	CCNNGG	2 cut(s)	48, 824
BseLI	CCNNNNNNNGG	3 cut(s)	616, 729, 760
BseMI	GCAATG	2 cut(s)	132, 872
BseMII	CTCAG	2 cut(s)	651, 878
BseNI	ACTGG	4 cut(s)	19, 621, 694, 754
BseSI	GKGCMC	2 cut(s)	288, 551
BseXI	GCAGC	2 cut(s)	69, 802
Bsh1236I	CGCG	1 cut(s)	310
BshFI	GGCC	1 cut(s)	608
BshNI	GGYRCC	2 cut(s)	283, 763
BsiHKAI	GWGCWC	1 cut(s)	420
BsiSI	CCGG	1 cut(s)	610
BslFI	GGGAC	1 cut(s)	31
BslI	CCNNNNNNNGG	3 cut(s)	616, 729, 760
BsmFI	GGGAC	1 cut(s)	31
BsmI	GAATGC	1 cut(s)	77
BsnI	GGCC	1 cut(s)	608
Bsp1286I	GDGCHC	3 cut(s)	288, 420, 551
Bsp1407I	TGTACA	1 cut(s)	578
Bsp143I	GATC	3 cut(s)	6, 518, 649
BspACI	CCGC	3 cut(s)	10, 310, 773
BspANI	GGCC	1 cut(s)	608
BspCNI	CTCAG	2 cut(s)	650, 877
BspFNI	CGCG	1 cut(s)	310
BspLI	GGNNCC	2 cut(s)	285, 765
BspMAI	CTGCAG	1 cut(s)	87
BspQI	GCTCTTC	1 cut(s)	245
BspT107I	GGYRCC	2 cut(s)	283, 763
BsrDI	GCAATG	2 cut(s)	132, 872
BsrGI	TGTACA	1 cut(s)	578
BsrI	ACTGG	4 cut(s)	19, 621, 694, 754
BssECI	CCNNGG	2 cut(s)	48, 824
BssMI	GATC	3 cut(s)	6, 518, 649
BssT1I	CCWWGG	1 cut(s)	824
Bst2UI	CCWGG	1 cut(s)	50
Bst4CI	ACNGT	2 cut(s)	305, 573
Bst6I	CTCTTC	1 cut(s)	245
BstAPI	GCANNNNNTGC	1 cut(s)	424
BstAUI	TGTACA	1 cut(s)	578
BstC8I	GCNNGC	4 cut(s)	273, 384, 388, 606
BstDEI	CTNAG	5 cut(s)	408, 480, 637, 859, 864
BstFNI	CGCG	1 cut(s)	310
BstH2I	RGCGCY	1 cut(s)	834
BstHHI	GCGC	1 cut(s)	833
BstKTI	GATC	3 cut(s)	9, 521, 652
BstMBI	GATC	3 cut(s)	6, 518, 649
BstMWI	GCNNNNNNNGC	2 cut(s)	424, 601
BstNI	CCWGG	1 cut(s)	50
BstNSI	RCATGY	1 cut(s)	275
BstSCI	CCNGG	2 cut(s)	48, 608
BstSFI	CTRYAG	1 cut(s)	83
BstSLI	GKGCMC	2 cut(s)	288, 551
BstUI	CGCG	1 cut(s)	310
BstV1I	GCAGC	2 cut(s)	69, 802
BsuRI	GGCC	1 cut(s)	608
BtsIMutI	CAGTG	3 cut(s)	12, 614, 687
Cac8I	GCNNGC	4 cut(s)	273, 384, 388, 606
CfoI	GCGC	1 cut(s)	833
Cfr13I	GGNCC	2 cut(s)	240, 607
Csp6I	GTAC	3 cut(s)	432, 579, 764
CviAII	CATG	2 cut(s)	272, 576
CviJI	RGCY	8 cut(s)	92, 102, 255, 386, 462, 604, 608, 863
CviKI_1	RGCY	8 cut(s)	92, 102, 255, 386, 462, 604, 608, 863
CviQI	GTAC	3 cut(s)	432, 579, 764
DdeI	CTNAG	5 cut(s)	408, 480, 637, 859, 864
DpnI	GATC	3 cut(s)	8, 520, 651
DpnII	GATC	3 cut(s)	6, 518, 649
DraIII	CACNNNGTG	1 cut(s)	424
Eam1104I	CTCTTC	1 cut(s)	245
EarI	CTCTTC	1 cut(s)	245
EciI	GGCGGA	1 cut(s)	788
Eco130I	CCWWGG	1 cut(s)	824
Eco47I	GGWCC	1 cut(s)	240
Eco57I	CTGAAG	1 cut(s)	185
EcoRII	CCWGG	1 cut(s)	48
EcoT14I	CCWWGG	1 cut(s)	824
EcoT22I	ATGCAT	1 cut(s)	277
ErhI	CCWWGG	1 cut(s)	824
FaeI	CATG	2 cut(s)	275, 579
FalI	AAGNNNNNCTT	2 cut(s)	360, 392
FaqI	GGGAC	1 cut(s)	31
FatI	CATG	2 cut(s)	271, 575
FauI	CCCGC	1 cut(s)	303
Fnu4HI	GCNGC	2 cut(s)	83, 791
Fsp4HI	GCNGC	2 cut(s)	83, 791
FspBI	CTAG	4 cut(s)	263, 532, 544, 565
GlaI	GCGC	1 cut(s)	832
GluI	GCNGC	2 cut(s)	83, 791
GsuI	CTGGAG	1 cut(s)	737
HaeII	RGCGCY	1 cut(s)	834
HaeIII	GGCC	1 cut(s)	608
HapII	CCGG	1 cut(s)	610
HhaI	GCGC	1 cut(s)	833
Hin1II	CATG	2 cut(s)	275, 579
Hin6I	GCGC	1 cut(s)	831
HinP1I	GCGC	1 cut(s)	831
HindIII	AAGCTT	1 cut(s)	384
HinfI	GANTC	2 cut(s)	53, 671
HpaII	CCGG	1 cut(s)	610
Hpy188I	TCNGA	3 cut(s)	165, 745, 867
Hpy188III	TCNNGA	4 cut(s)	204, 263, 352, 465
HpyCH4III	ACNGT	2 cut(s)	305, 573
HpyCH4V	TGCA	8 cut(s)	64, 75, 85, 107, 271, 275, 595, 698
HpyF10VI	GCNNNNNNNGC	2 cut(s)	424, 601
HpyF3I	CTNAG	5 cut(s)	408, 480, 637, 859, 864
Hsp92II	CATG	2 cut(s)	275, 579
HspAI	GCGC	1 cut(s)	831
KpnI	GGTACC	1 cut(s)	767
Kzo9I	GATC	3 cut(s)	6, 518, 649
LguI	GCTCTTC	1 cut(s)	245
LmnI	GCTCC	5 cut(s)	157, 415, 601, 756, 838
Lsp1109I	GCAGC	2 cut(s)	69, 802
LweI	GCATC	1 cut(s)	169
MaeI	CTAG	4 cut(s)	263, 532, 544, 565
MaeIII	GTNAC	4 cut(s)	399, 475, 612, 854
MalI	GATC	3 cut(s)	8, 520, 651
MboI	GATC	3 cut(s)	6, 518, 649
MboII	GAAGA	3 cut(s)	196, 262, 672
MfeI	CAATTG	1 cut(s)	179
MhlI	GDGCHC	3 cut(s)	288, 420, 551
MluCI	AATT	6 cut(s)	76, 179, 187, 258, 362, 739
MmeI	TCCRAC	2 cut(s)	218, 339
MnlI	CCTC	6 cut(s)	14, 274, 446, 531, 834, 874
Mph1103I	ATGCAT	1 cut(s)	277
MroXI	GAANNNNTTC	1 cut(s)	188
MspI	CCGG	1 cut(s)	610
MspR9I	CCNGG	2 cut(s)	50, 610
MunI	CAATTG	1 cut(s)	179
Mva1269I	GAATGC	1 cut(s)	77
MvaI	CCWGG	1 cut(s)	50
MvnI	CGCG	1 cut(s)	310
MwoI	GCNNNNNNNGC	2 cut(s)	424, 601
NciI	CCSGG	1 cut(s)	610
NdeII	GATC	3 cut(s)	6, 518, 649
NlaIII	CATG	2 cut(s)	275, 579
NlaIV	GGNNCC	2 cut(s)	285, 765
NmuCI	GTSAC	2 cut(s)	612, 854
NsiI	ATGCAT	1 cut(s)	277
NspI	RCATGY	1 cut(s)	275
PaeI	GCATGC	1 cut(s)	275
PciSI	GCTCTTC	1 cut(s)	245
PctI	GAATGC	1 cut(s)	77
PdmI	GAANNNNTTC	1 cut(s)	188
PfeI	GAWTC	2 cut(s)	53, 671
PflMI	CCANNNNNTGG	1 cut(s)	760
PkrI	GCNGC	2 cut(s)	84, 792
Psp6I	CCWGG	1 cut(s)	48
PspGI	CCWGG	1 cut(s)	48
PspN4I	GGNNCC	2 cut(s)	285, 765
PspPI	GGNCC	2 cut(s)	240, 607
PstI	CTGCAG	1 cut(s)	87
RsaI	GTAC	3 cut(s)	433, 580, 765
RsaNI	GTAC	3 cut(s)	432, 579, 764
SapI	GCTCTTC	1 cut(s)	245
SatI	GCNGC	2 cut(s)	83, 791
Sau3AI	GATC	3 cut(s)	6, 518, 649
Sau96I	GGNCC	2 cut(s)	240, 607
ScrFI	CCNGG	2 cut(s)	50, 610
SduI	GDGCHC	3 cut(s)	288, 420, 551
SfaNI	GCATC	1 cut(s)	169
SfcI	CTRYAG	1 cut(s)	83
SinI	GGWCC	1 cut(s)	240
SmlI	CTYRAG	1 cut(s)	838
SmoI	CTYRAG	1 cut(s)	838
SphI	GCATGC	1 cut(s)	275
Sse9I	AATT	6 cut(s)	76, 179, 187, 258, 362, 739
SsiI	CCGC	3 cut(s)	10, 310, 773
SspI	AATATT	1 cut(s)	797
SspMI	CTAG	4 cut(s)	263, 532, 544, 565
StyD4I	CCNGG	2 cut(s)	48, 608
StyI	CCWWGG	1 cut(s)	824
TaaI	ACNGT	2 cut(s)	305, 573
TasI	AATT	6 cut(s)	76, 179, 187, 258, 362, 739
TatI	WGTACW	2 cut(s)	431, 578
TfiI	GAWTC	2 cut(s)	53, 671
TscAI	CASTG	3 cut(s)	19, 621, 694
TseFI	GTSAC	2 cut(s)	612, 854
TseI	GCWGC	2 cut(s)	82, 790
Tsp45I	GTSAC	2 cut(s)	612, 854
TspDTI	ATGAA	2 cut(s)	326, 861
TspRI	CASTG	3 cut(s)	19, 621, 694
Van91I	CCANNNNNTGG	1 cut(s)	760
VpaK11BI	GGWCC	1 cut(s)	240
XapI	RAATTY	3 cut(s)	187, 258, 739
XbaI	TCTAGA	1 cut(s)	262
XceI	RCATGY	1 cut(s)	275
XmnI	GAANNNNTTC	1 cut(s)	188
XspI	CTAG	4 cut(s)	263, 532, 544, 565
Zsp2I	ATGCAT	1 cut(s)	277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.