Rh2DG556000
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Reverse (-)
78597358 .. 78601180
3823 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG556000.1

Sequence Viewer

Length: 1383 bp
ATGTGGGTGGCTACCGTACCTCACCGTCACCGACCCCTTCCTCCGGTTCCGACGATCCTCACCGCTCGTCCGAATCCGAAGCTGTTCTATCATTCTCTTCCCAAACCAGCCTCGTTTCGTTTCGGTCTCCGCCTCCGCCTCAACAGCTACAAAGCTTCGGCCGCAAAGAAGCAGCTGCCGGAGGTAGCTACTCGAAAATCAGATAGTGAGAAATCTCGGTCACAAGAGGAAAAGAATGGTGAAGGTTTGGATTTGGGATGGTTGCCTGCTTTTCCTCACGTGTTTATTGCCTCCATGTCCAATTTTCTTTTCGGTTATCACATAGGGGTGATGAATGGTCCGATTGTTTCGATTGGTCGAGAACTCGGTTTTGAAGGTAATTCAATTCTCGAGGGGCTTGTGGTAAGCATATTTATAGTTGGTGCATTTCTTGGAAGCATATGCTGCGGTTCGATTGTAGATAAACTTGGCTGTAGGAGGACCTTTCAGATTGACACCATTCCTTTGATTCTTGGAGCATTGATAAGTGCACAAGCGCATTCCTTGGATGAAGTACTTTTGGGAAGGTTTCTTGTTGGCCTCGGCATAGGGGTTAACACTGTTCTTGTTCCTATCTATATCTCAGAGATTGCTCCAACAAAATATAGAGGTTCGTTGGGAACCTTGTGTCAAATTGGCACATGTCTTGGGATCATTTCATCACTGTTTCTTGGAATTCCCTCAGAAACTGATCCACACTGGTGGCGGACAATGCTGTATATCGCAAGTGTCCCTGGATTTGTCCTTGCACTTGGAATGCAATTTGCTGCAGATAGCCCCCGTTGGCTATGCAAGGTTGGGAGATTGAGCAATGCTAAAGAAGTAATCAAAAATGTTTGGGGAGCATCTGAAGTTGAAAAGGCAATTGAAGAATTTCAGGCAGTAATCAAGAATGATGGTAGTGATTTGGAAAGCAGTTGGTTGGACCTATTGGAAGAGCCAAATTCTAGAGTTGCATGCATAGGAGGTGCCCTTTTTGTATTTCAACAGTTCGCGGGTATAAATGGGGTTCTTTACTTTTCATCATTGACTTTTCAAGATGTTGGAATTACAAGTAGTGCTTTAGCAAGCTTGCTTATTGGTGTTACCAACTTAGCAGGTATGAAATATTATGTATATGTACGTGTGTGGAGGGAAATATGTTTCTTGAACAACCCGTCATTTGCATTGTTATTGGTCATTGCAGGAGCACTTTGTGCTTTGTACTTGATTGATAAACAGGGGAGGCAGAAGCTCTTGATTGGAAGTTACTTAGGAATGGTGAGTTGCATTGATAAATATTTTGTAGACAATGAGAAACTTACCTTGCATACATTGAAAAAGAGAGGAATATCTGCTTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

460

Amino Acids

50.33

Weight (kDa)

8.9

Isoelectric Point (pI)

33.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sugar_tr PF00083 94 - 379 2e-62 Sugar (and other) transporter
MFS_1 PF07690 97 - 413 2.5e-15 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1127
AccB1I GGYRCC 1 cut(s) 1007
AccBSI CCGCTC 1 cut(s) 65
AccI GTMKAC 1 cut(s) 1326
AccII CGCG 1 cut(s) 1034
AciI CCGC 7 cut(s) 63, 130, 136, 162, 447, 745, 1034
AclWI GGATC 3 cut(s) 49, 698, 725
AcoI YGGCCR 1 cut(s) 159
AcsI RAATTY 3 cut(s) 714, 911, 982
AcuI CTGAAG 1 cut(s) 909
AcvI CACGTG 1 cut(s) 280
AdeI CACNNNGTG 1 cut(s) 1235
AfaI GTAC 4 cut(s) 18, 555, 1161, 1244
AfiI CCNNNNNNNGG 1 cut(s) 43
AflIII ACRYGT 3 cut(s) 279, 680, 1162
AgsI TTSAA 8 cut(s) 374, 384, 896, 908, 1025, 1076, 1189, 1357
AjnI CCWGG 1 cut(s) 772
AjuI GAANNNNNNNTTGG 2 cut(s) 293, 325
AleI CACNNNNGTG 1 cut(s) 739
AluBI AGCT 7 cut(s) 82, 147, 155, 175, 188, 1110, 1273
AluI AGCT 7 cut(s) 82, 147, 155, 175, 188, 1110, 1273
Alw21I GWGCWC 2 cut(s) 532, 1231
Alw26I GTCTC 1 cut(s) 131
Alw44I GTGCAC 1 cut(s) 528
AlwI GGATC 3 cut(s) 49, 698, 725
AlwNI CAGNNNCTG 1 cut(s) 728
Ama87I CYCGRG 1 cut(s) 389
AoxI GGCC 2 cut(s) 159, 577
ApaLI GTGCAC 1 cut(s) 528
ApeKI GCWGC 4 cut(s) 172, 175, 444, 806
ApoI RAATTY 3 cut(s) 714, 911, 982
Asp700I GAANNNNTTC 2 cut(s) 83, 912
AspLEI GCGC 1 cut(s) 538
AspS9I GGNCC 3 cut(s) 338, 480, 964
AsuHPI GGTGA 6 cut(s) 14, 20, 52, 251, 340, 1312
AvaI CYCGRG 1 cut(s) 389
AvaII GGWCC 3 cut(s) 338, 480, 964
BaeGI GKGCMC 2 cut(s) 532, 1012
BanI GGYRCC 1 cut(s) 1007
BbrPI CACGTG 1 cut(s) 280
Bbv12I GWGCWC 2 cut(s) 532, 1231
BbvI GCAGC 4 cut(s) 162, 184, 431, 793
BccI CCATC 2 cut(s) 252, 929
BciT130I CCWGG 1 cut(s) 774
BcoDI GTCTC 1 cut(s) 131
BfaI CTAG 1 cut(s) 987
BfmI CTRYAG 2 cut(s) 472, 807
BfuAI ACCTGC 1 cut(s) 1127
BisI GCNGC 5 cut(s) 162, 173, 176, 445, 807
BlsI GCNGC 5 cut(s) 163, 174, 177, 446, 808
BmcAI AGTACT 1 cut(s) 555
Bme1390I CCNGG 1 cut(s) 774
Bme18I GGWCC 3 cut(s) 338, 480, 964
BmeT110I CYCGRG 1 cut(s) 389
BmgT120I GGNCC 3 cut(s) 338, 480, 964
BmiI GGNNCC 3 cut(s) 48, 661, 1009
BmrFI CCNGG 1 cut(s) 774
BmsI GCATC 1 cut(s) 893
BsaAI YACGTR 2 cut(s) 280, 1163
BsaI GGTCTC 1 cut(s) 131
BsaJI CCNNGG 3 cut(s) 543, 580, 772
BsaWI WCCGGW 1 cut(s) 43
Bsc4I CCNNNNNNNGG 1 cut(s) 43
Bse1I ACTGG 1 cut(s) 743
Bse3DI GCAATG 2 cut(s) 856, 1218
BseBI CCWGG 1 cut(s) 774
BseDI CCNNGG 3 cut(s) 543, 580, 772
BseGI GGATG 2 cut(s) 263, 553
BseLI CCNNNNNNNGG 1 cut(s) 43
BseMI GCAATG 2 cut(s) 856, 1218
BseMII CTCAG 2 cut(s) 636, 735
BseNI ACTGG 1 cut(s) 743
BseSI GKGCMC 2 cut(s) 532, 1012
BseX3I CGGCCG 1 cut(s) 159
BseXI GCAGC 4 cut(s) 162, 184, 431, 793
Bsh1236I CGCG 1 cut(s) 1034
Bsh1285I CGRYCG 1 cut(s) 162
BshFI GGCC 2 cut(s) 161, 579
BshNI GGYRCC 1 cut(s) 1007
BsiEI CGRYCG 1 cut(s) 162
BsiHKAI GWGCWC 2 cut(s) 532, 1231
BsiHKCI CYCGRG 1 cut(s) 389
BsiSI CCGG 2 cut(s) 44, 179
BslFI GGGAC 1 cut(s) 755
BslI CCNNNNNNNGG 1 cut(s) 43
BsmAI GTCTC 1 cut(s) 131
BsmFI GGGAC 1 cut(s) 755
BsmI GAATGC 2 cut(s) 538, 801
BsnI GGCC 2 cut(s) 161, 579
Bso31I GGTCTC 1 cut(s) 131
BsoBI CYCGRG 1 cut(s) 389
Bsp1286I GDGCHC 3 cut(s) 532, 1012, 1231
Bsp143I GATC 3 cut(s) 54, 690, 730
BspACI CCGC 7 cut(s) 63, 130, 136, 162, 447, 745, 1034
BspANI GGCC 2 cut(s) 161, 579
BspCNI CTCAG 2 cut(s) 635, 734
BspFNI CGCG 1 cut(s) 1034
BspLI GGNNCC 3 cut(s) 48, 661, 1009
BspMAI CTGCAG 1 cut(s) 811
BspMI ACCTGC 1 cut(s) 1127
BspPI GGATC 3 cut(s) 49, 698, 725
BspQI GCTCTTC 1 cut(s) 969
BspT107I GGYRCC 1 cut(s) 1007
BspTNI GGTCTC 1 cut(s) 131
BsrBI CCGCTC 1 cut(s) 65
BsrDI GCAATG 2 cut(s) 856, 1218
BsrI ACTGG 1 cut(s) 743
BssECI CCNNGG 3 cut(s) 543, 580, 772
BssMI GATC 3 cut(s) 54, 690, 730
BssT1I CCWWGG 1 cut(s) 543
Bst2UI CCWGG 1 cut(s) 774
Bst4CI ACNGT 5 cut(s) 16, 26, 601, 705, 1029
Bst6I CTCTTC 2 cut(s) 102, 969
BstAPI GCANNNNNTGC 2 cut(s) 444, 1235
BstBAI YACGTR 2 cut(s) 280, 1163
BstC8I GCNNGC 4 cut(s) 267, 997, 1108, 1112
BstDEI CTNAG 4 cut(s) 622, 721, 1132, 1291
BstF5I GGATG 2 cut(s) 263, 553
BstFNI CGCG 1 cut(s) 1034
BstHHI GCGC 1 cut(s) 538
BstKTI GATC 3 cut(s) 57, 693, 733
BstMAI GTCTC 1 cut(s) 131
BstMBI GATC 3 cut(s) 54, 690, 730
BstMCI CGRYCG 1 cut(s) 162
BstMWI GCNNNNNNNGC 5 cut(s) 144, 161, 444, 751, 1235
BstNI CCWGG 1 cut(s) 774
BstNSI RCATGY 2 cut(s) 684, 999
BstSCI CCNGG 1 cut(s) 772
BstSFI CTRYAG 2 cut(s) 472, 807
BstSLI GKGCMC 2 cut(s) 532, 1012
BstUI CGCG 1 cut(s) 1034
BstV1I GCAGC 4 cut(s) 162, 184, 431, 793
BstXI CCANNNNNNTGG 1 cut(s) 741
BstZI CGGCCG 1 cut(s) 159
BsuRI GGCC 2 cut(s) 161, 579
BtsCI GGATG 2 cut(s) 263, 553
BtsIMutI CAGTG 3 cut(s) 597, 701, 736
BveI ACCTGC 1 cut(s) 1127
Cac8I GCNNGC 4 cut(s) 267, 997, 1108, 1112
CaiI CAGNNNCTG 1 cut(s) 728
CfoI GCGC 1 cut(s) 538
Cfr13I GGNCC 3 cut(s) 338, 480, 964
Csp6I GTAC 4 cut(s) 17, 554, 1160, 1243
CviAII CATG 3 cut(s) 295, 681, 996
CviQI GTAC 4 cut(s) 17, 554, 1160, 1243
DdeI CTNAG 4 cut(s) 622, 721, 1132, 1291
DpnI GATC 3 cut(s) 56, 692, 732
DpnII GATC 3 cut(s) 54, 690, 730
DraIII CACNNNGTG 1 cut(s) 1235
EaeI YGGCCR 1 cut(s) 159
EagI CGGCCG 1 cut(s) 159
Eam1104I CTCTTC 2 cut(s) 102, 969
EarI CTCTTC 2 cut(s) 102, 969
EciI GGCGGA 3 cut(s) 119, 125, 760
EclXI CGGCCG 1 cut(s) 159
Eco130I CCWWGG 1 cut(s) 543
Eco31I GGTCTC 1 cut(s) 131
Eco47I GGWCC 3 cut(s) 338, 480, 964
Eco52I CGGCCG 1 cut(s) 159
Eco57I CTGAAG 1 cut(s) 909
Eco72I CACGTG 1 cut(s) 280
Eco88I CYCGRG 1 cut(s) 389
EcoO109I RGGNCCY 1 cut(s) 480
EcoRI GAATTC 1 cut(s) 714
EcoRII CCWGG 1 cut(s) 772
EcoT14I CCWWGG 1 cut(s) 543
EcoT22I ATGCAT 1 cut(s) 1001
ErhI CCWWGG 1 cut(s) 543
FaeI CATG 3 cut(s) 298, 684, 999
FalI AAGNNNNNCTT 2 cut(s) 1084, 1116
FaqI GGGAC 1 cut(s) 755
FatI CATG 3 cut(s) 294, 680, 995
FauI CCCGC 1 cut(s) 1027
FauNDI CATATG 1 cut(s) 440
FblI GTMKAC 1 cut(s) 1326
Fnu4HI GCNGC 5 cut(s) 162, 173, 176, 445, 807
FokI GGATG 2 cut(s) 270, 560
Fsp4HI GCNGC 5 cut(s) 162, 173, 176, 445, 807
FspBI CTAG 1 cut(s) 987
GlaI GCGC 1 cut(s) 537
GluI GCNGC 5 cut(s) 162, 173, 176, 445, 807
HaeIII GGCC 2 cut(s) 161, 579
HapII CCGG 2 cut(s) 44, 179
HhaI GCGC 1 cut(s) 538
Hin1II CATG 3 cut(s) 298, 684, 999
Hin6I GCGC 1 cut(s) 536
HinP1I GCGC 1 cut(s) 536
HincII GTYRAC 1 cut(s) 595
HindII GTYRAC 1 cut(s) 595
HindIII AAGCTT 2 cut(s) 153, 1108
HinfI GANTC 2 cut(s) 73, 508
HpaI GTTAAC 1 cut(s) 595
HpaII CCGG 2 cut(s) 44, 179
HphI GGTGA 6 cut(s) 14, 20, 52, 251, 340, 1312
Hpy166II GTNNAC 3 cut(s) 530, 595, 1327
Hpy188I TCNGA 9 cut(s) 51, 72, 78, 202, 342, 489, 625, 724, 889
Hpy188III TCNNGA 7 cut(s) 359, 389, 928, 987, 1076, 1186, 1276
Hpy8I GTNNAC 3 cut(s) 530, 595, 1327
Hpy99I CGWCG 1 cut(s) 55
HpyAV CCTTC 4 cut(s) 47, 236, 368, 558
HpyCH4III ACNGT 5 cut(s) 16, 26, 601, 705, 1029
HpyCH4IV ACGT 2 cut(s) 279, 1162
HpyF10VI GCNNNNNNNGC 5 cut(s) 144, 161, 444, 751, 1235
HpyF3I CTNAG 4 cut(s) 622, 721, 1132, 1291
HpySE526I ACGT 2 cut(s) 279, 1162
Hsp92II CATG 3 cut(s) 298, 684, 999
HspAI GCGC 1 cut(s) 536
KspAI GTTAAC 1 cut(s) 595
Kzo9I GATC 3 cut(s) 54, 690, 730
LguI GCTCTTC 1 cut(s) 969
LmnI GCTCC 4 cut(s) 515, 637, 881, 1226
Lsp1109I GCAGC 4 cut(s) 162, 184, 431, 793
LweI GCATC 1 cut(s) 893
MaeI CTAG 1 cut(s) 987
MaeII ACGT 2 cut(s) 279, 1162
MaeIII GTNAC 4 cut(s) 26, 219, 1123, 1286
MalI GATC 3 cut(s) 56, 692, 732
MbiI CCGCTC 1 cut(s) 65
MboI GATC 3 cut(s) 54, 690, 730
MboII GAAGA 3 cut(s) 89, 920, 986
MfeI CAATTG 1 cut(s) 903
MhlI GDGCHC 3 cut(s) 532, 1012, 1231
MmeI TCCRAC 4 cut(s) 74, 659, 942, 1063
Mph1103I ATGCAT 1 cut(s) 1001
MroXI GAANNNNTTC 2 cut(s) 83, 912
MseI TTAA 1 cut(s) 594
MslI CAYNNNNRTG 2 cut(s) 326, 739
MspA1I CMGCKG 1 cut(s) 175
MspI CCGG 2 cut(s) 44, 179
MspR9I CCNGG 1 cut(s) 774
MunI CAATTG 1 cut(s) 903
Mva1269I GAATGC 2 cut(s) 538, 801
MvaI CCWGG 1 cut(s) 774
MvnI CGCG 1 cut(s) 1034
MwoI GCNNNNNNNGC 5 cut(s) 144, 161, 444, 751, 1235
NdeI CATATG 1 cut(s) 440
NdeII GATC 3 cut(s) 54, 690, 730
NlaIII CATG 3 cut(s) 298, 684, 999
NlaIV GGNNCC 3 cut(s) 48, 661, 1009
NmeAIII GCCGAG 1 cut(s) 561
NmuCI GTSAC 2 cut(s) 26, 219
NsiI ATGCAT 1 cut(s) 1001
NspI RCATGY 2 cut(s) 684, 999
OliI CACNNNNGTG 1 cut(s) 739
PaeI GCATGC 1 cut(s) 999
PaeR7I CTCGAG 1 cut(s) 389
PciI ACATGT 1 cut(s) 680
PciSI GCTCTTC 1 cut(s) 969
PctI GAATGC 2 cut(s) 538, 801
PdmI GAANNNNTTC 2 cut(s) 83, 912
PfeI GAWTC 2 cut(s) 73, 508
PkrI GCNGC 5 cut(s) 163, 174, 177, 446, 808
PmaCI CACGTG 1 cut(s) 280
PmlI CACGTG 1 cut(s) 280
Ppu21I YACGTR 2 cut(s) 280, 1163
PpuMI RGGWCCY 1 cut(s) 480
PscI ACATGT 1 cut(s) 680
Psp5II RGGWCCY 1 cut(s) 480
Psp6I CCWGG 1 cut(s) 772
PspCI CACGTG 1 cut(s) 280
PspGI CCWGG 1 cut(s) 772
PspN4I GGNNCC 3 cut(s) 48, 661, 1009
PspPI GGNCC 3 cut(s) 338, 480, 964
PspPPI RGGWCCY 1 cut(s) 480
PstI CTGCAG 1 cut(s) 811
PstNI CAGNNNCTG 1 cut(s) 728
PvuII CAGCTG 1 cut(s) 175
RsaI GTAC 4 cut(s) 18, 555, 1161, 1244
RsaNI GTAC 4 cut(s) 17, 554, 1160, 1243
RseI CAYNNNNRTG 2 cut(s) 326, 739
SapI GCTCTTC 1 cut(s) 969
SaqAI TTAA 1 cut(s) 594
SatI GCNGC 5 cut(s) 162, 173, 176, 445, 807
Sau3AI GATC 3 cut(s) 54, 690, 730
Sau96I GGNCC 3 cut(s) 338, 480, 964
ScaI AGTACT 1 cut(s) 555
ScrFI CCNGG 1 cut(s) 774
SduI GDGCHC 3 cut(s) 532, 1012, 1231
SfaNI GCATC 1 cut(s) 893
SfcI CTRYAG 2 cut(s) 472, 807
Sfr274I CTCGAG 1 cut(s) 389
SinI GGWCC 3 cut(s) 338, 480, 964
SlaI CTCGAG 1 cut(s) 389
SmiMI CAYNNNNRTG 2 cut(s) 326, 739
SmlI CTYRAG 1 cut(s) 389
SmoI CTYRAG 1 cut(s) 389
SphI GCATGC 1 cut(s) 999
SsiI CCGC 7 cut(s) 63, 130, 136, 162, 447, 745, 1034
SspI AATATT 2 cut(s) 1148, 1319
SspMI CTAG 1 cut(s) 987
StyD4I CCNGG 1 cut(s) 772
StyI CCWWGG 1 cut(s) 543
TaaI ACNGT 5 cut(s) 16, 26, 601, 705, 1029
TaiI ACGT 2 cut(s) 282, 1165
TaqI TCGA 5 cut(s) 193, 350, 358, 390, 452
TaqII GACCGA 2 cut(s) 113, 207
TatI WGTACW 2 cut(s) 553, 1242
TauI GCSGC 1 cut(s) 164
TfiI GAWTC 2 cut(s) 73, 508
Tru1I TTAA 1 cut(s) 594
Tru9I TTAA 1 cut(s) 594
TscAI CASTG 3 cut(s) 604, 708, 743
TseFI GTSAC 2 cut(s) 26, 219
TseI GCWGC 4 cut(s) 172, 175, 444, 806
Tsp45I GTSAC 2 cut(s) 26, 219
TspDTI ATGAA 5 cut(s) 347, 564, 687, 1050, 1157
TspRI CASTG 3 cut(s) 604, 708, 743
VneI GTGCAC 1 cut(s) 528
VpaK11BI GGWCC 3 cut(s) 338, 480, 964
XapI RAATTY 3 cut(s) 714, 911, 982
XbaI TCTAGA 1 cut(s) 986
XceI RCATGY 2 cut(s) 684, 999
XhoI CTCGAG 1 cut(s) 389
XmiI GTMKAC 1 cut(s) 1326
XmnI GAANNNNTTC 2 cut(s) 83, 912
XspI CTAG 1 cut(s) 987
ZrmI AGTACT 1 cut(s) 555
Zsp2I ATGCAT 1 cut(s) 1001
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.