Rorug02G0467300
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0007368
Physical Location & Seq
Forward (+)
59853799 .. 59854317
519 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0467300.1

Sequence Viewer

Length: 519 bp
ATGGACGAGATTGCTTATGGACTAGAGATGGCGGGGCAACGCTTCATTTGGGTTGTCGGATCATCAGGGATGTGGGTTCCAGATGAAGGATGGATGAGAAGGGTGGAAGGGAGAGGGTTGGTTGTACGTGATTGGGTAGACCAGCGGAGTATCCTAGCGCACCCGAAGGTGGGCGGGTTTGTGAGTCATTGTGGGTGGAACTCAGTGTTGGAGAGCTTGTCAATGGGGGTGCCACTATTAGCTTGGCCAATCGAAGCGGAGCAACCATTGAACGCCAAGTTCGTTGCAATGGGGCTCAAAGCAGGGCTGATGGTTTCAGAAGAGAGGGTCAAGACTATTGATAGGCATGTGATATGTGATGGAGTGAAGGAGTTGATGGAAGGTGAGAAAGGGAAGAGTGCTAGGGAAAGGGCAAGAGAATTAGGGACAATGGCTTGGAATGCTGTCAAGAAAGGTGGTTCGTCTGATGAAAAATTGGATGAATTGATCAATCGACTCATTGACATCAAGAGGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sugar_tr

Protein Analysis

172

Amino Acids

19.21

Weight (kDa)

5.99

Isoelectric Point (pI)

31.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 3 - 129 5.9e-17 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 229
AccI GTMKAC 1 cut(s) 138
AciI CCGC 4 cut(s) 32, 145, 174, 257
AclWI GGATC 1 cut(s) 67
AcoI YGGCCR 1 cut(s) 245
AfaI GTAC 1 cut(s) 126
AfiI CCNNNNNNNGG 3 cut(s) 86, 169, 170
AgsI TTSAA 1 cut(s) 271
AjuI GAANNNNNNNTTGG 2 cut(s) 191, 223
AluBI AGCT 2 cut(s) 216, 242
AluI AGCT 2 cut(s) 216, 242
AlwI GGATC 1 cut(s) 67
AoxI GGCC 1 cut(s) 245
AspLEI GCGC 1 cut(s) 160
AsuHPI GGTGA 1 cut(s) 395
BalI TGGCCA 1 cut(s) 247
BanI GGYRCC 1 cut(s) 229
BanII GRGCYC 1 cut(s) 297
BccI CCATC 5 cut(s) 22, 84, 304, 353, 370
BciVI GTATCC 1 cut(s) 161
BclI TGATCA 1 cut(s) 486
BfaI CTAG 3 cut(s) 23, 155, 402
BfuI GTATCC 1 cut(s) 161
BmiI GGNNCC 2 cut(s) 78, 231
BsaAI YACGTR 1 cut(s) 128
BsaXI ACNNNNNCTCC 2 cut(s) 203, 233
Bsc4I CCNNNNNNNGG 3 cut(s) 86, 169, 170
Bse3DI GCAATG 1 cut(s) 294
BseGI GGATG 4 cut(s) 75, 95, 99, 484
BseLI CCNNNNNNNGG 3 cut(s) 86, 169, 170
BseMI GCAATG 1 cut(s) 294
BseMII CTCAG 1 cut(s) 216
BshFI GGCC 1 cut(s) 247
BshNI GGYRCC 1 cut(s) 229
BslFI GGGAC 1 cut(s) 439
BslI CCNNNNNNNGG 3 cut(s) 86, 169, 170
BsmFI GGGAC 1 cut(s) 439
BsmI GAATGC 1 cut(s) 445
BsnI GGCC 1 cut(s) 247
Bsp1286I GDGCHC 1 cut(s) 297
Bsp143I GATC 2 cut(s) 59, 486
BspACI CCGC 4 cut(s) 32, 145, 174, 257
BspANI GGCC 1 cut(s) 247
BspCNI CTCAG 1 cut(s) 215
BspLI GGNNCC 2 cut(s) 78, 231
BspPI GGATC 1 cut(s) 67
BspT107I GGYRCC 1 cut(s) 229
BsrDI GCAATG 1 cut(s) 294
BssMI GATC 2 cut(s) 59, 486
Bst6I CTCTTC 2 cut(s) 315, 389
BstBAI YACGTR 1 cut(s) 128
BstDEI CTNAG 1 cut(s) 202
BstF5I GGATG 4 cut(s) 75, 95, 99, 484
BstHHI GCGC 1 cut(s) 160
BstKTI GATC 2 cut(s) 62, 489
BstMBI GATC 2 cut(s) 59, 486
BstMWI GCNNNNNNNGC 1 cut(s) 440
BstNSI RCATGY 1 cut(s) 350
BsuI GTATCC 1 cut(s) 161
BsuRI GGCC 1 cut(s) 247
BtsCI GGATG 4 cut(s) 75, 95, 99, 484
BtsIMutI CAGTG 1 cut(s) 210
CfoI GCGC 1 cut(s) 160
Csp6I GTAC 1 cut(s) 125
CspCI CAANNNNNGTGG 2 cut(s) 436, 471
CviAII CATG 1 cut(s) 347
CviJI RGCY 6 cut(s) 216, 242, 247, 295, 307, 434
CviKI_1 RGCY 6 cut(s) 216, 242, 247, 295, 307, 434
CviQI GTAC 1 cut(s) 125
DdeI CTNAG 1 cut(s) 202
DpnI GATC 2 cut(s) 61, 488
DpnII GATC 2 cut(s) 59, 486
EaeI YGGCCR 1 cut(s) 245
Eam1104I CTCTTC 2 cut(s) 315, 389
EarI CTCTTC 2 cut(s) 315, 389
Eco24I GRGCYC 1 cut(s) 297
EcoT38I GRGCYC 1 cut(s) 297
FaeI CATG 1 cut(s) 350
FaiI YATR 3 cut(s) 18, 348, 355
FaqI GGGAC 1 cut(s) 439
FatI CATG 1 cut(s) 346
FauI CCCGC 2 cut(s) 25, 167
FbaI TGATCA 1 cut(s) 486
FblI GTMKAC 1 cut(s) 138
FokI GGATG 4 cut(s) 82, 102, 106, 491
FriOI GRGCYC 1 cut(s) 297
FspBI CTAG 3 cut(s) 23, 155, 402
GlaI GCGC 1 cut(s) 159
HaeIII GGCC 1 cut(s) 247
HhaI GCGC 1 cut(s) 160
Hin1II CATG 1 cut(s) 350
Hin6I GCGC 1 cut(s) 158
HinP1I GCGC 1 cut(s) 158
HinfI GANTC 2 cut(s) 184, 495
HphI GGTGA 1 cut(s) 395
Hpy166II GTNNAC 1 cut(s) 139
Hpy188I TCNGA 3 cut(s) 59, 319, 466
Hpy188III TCNNGA 4 cut(s) 80, 331, 448, 508
Hpy8I GTNNAC 1 cut(s) 139
HpyAV CCTTC 6 cut(s) 80, 93, 101, 160, 361, 374
HpyCH4IV ACGT 1 cut(s) 127
HpyCH4V TGCA 1 cut(s) 287
HpyF10VI GCNNNNNNNGC 1 cut(s) 440
HpyF3I CTNAG 1 cut(s) 202
HpySE526I ACGT 1 cut(s) 127
Hsp92II CATG 1 cut(s) 350
HspAI GCGC 1 cut(s) 158
Ksp22I TGATCA 1 cut(s) 486
Kzo9I GATC 2 cut(s) 59, 486
LmnI GCTCC 1 cut(s) 259
LpnPI CCDG 4 cut(s) 51, 93, 155, 288
MaeI CTAG 3 cut(s) 23, 155, 402
MaeII ACGT 1 cut(s) 127
MalI GATC 2 cut(s) 61, 488
MboI GATC 2 cut(s) 59, 486
MboII GAAGA 2 cut(s) 332, 406
MhlI GDGCHC 1 cut(s) 297
MlsI TGGCCA 1 cut(s) 247
MluCI AATT 3 cut(s) 419, 473, 482
MluNI TGGCCA 1 cut(s) 247
MlyI GAGTC 2 cut(s) 193, 489
MmeI TCCRAC 2 cut(s) 37, 189
MnlI CCTC 3 cut(s) 107, 318, 504
Mox20I TGGCCA 1 cut(s) 247
MscI TGGCCA 1 cut(s) 247
MseI TTAA 1 cut(s) 517
Msp20I TGGCCA 1 cut(s) 247
MspA1I CMGCKG 1 cut(s) 145
Mva1269I GAATGC 1 cut(s) 445
MwoI GCNNNNNNNGC 1 cut(s) 440
NdeII GATC 2 cut(s) 59, 486
NlaIII CATG 1 cut(s) 350
NlaIV GGNNCC 2 cut(s) 78, 231
NspI RCATGY 1 cut(s) 350
PcsI WCGNNNNNNNCGW 1 cut(s) 279
PctI GAATGC 1 cut(s) 445
PleI GAGTC 2 cut(s) 192, 489
PpsI GAGTC 2 cut(s) 192, 489
Ppu21I YACGTR 1 cut(s) 128
PspN4I GGNNCC 2 cut(s) 78, 231
RsaI GTAC 1 cut(s) 126
RsaNI GTAC 1 cut(s) 125
SaqAI TTAA 1 cut(s) 517
Sau3AI GATC 2 cut(s) 59, 486
SchI GAGTC 2 cut(s) 193, 489
SduI GDGCHC 1 cut(s) 297
SetI ASST 6 cut(s) 130, 171, 218, 244, 385, 457
Sse9I AATT 3 cut(s) 419, 473, 482
SsiI CCGC 4 cut(s) 32, 145, 174, 257
SspMI CTAG 3 cut(s) 23, 155, 402
TaiI ACGT 1 cut(s) 130
TaqI TCGA 2 cut(s) 252, 493
TasI AATT 3 cut(s) 419, 473, 482
Tru1I TTAA 1 cut(s) 517
Tru9I TTAA 1 cut(s) 517
TscAI CASTG 1 cut(s) 210
TspDTI ATGAA 4 cut(s) 34, 99, 483, 495
TspRI CASTG 1 cut(s) 210
XceI RCATGY 1 cut(s) 350
XcmI CCANNNNNNNNNTGG 2 cut(s) 87, 240
XmiI GTMKAC 1 cut(s) 138
XspI CTAG 3 cut(s) 23, 155, 402
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.