Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8504167.1

Orthogroup ID

OG0005967

Physical Location & Seq

Genomic Coordinates Forward (+)

64 .. 2217

Gene Structure 2154 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8504167.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

atgaatggtgagcctgagatagtgaaaaactttctcttgaagacccttcagcttcaaggctgggaaaaaagaatagaccggttcaagcttggagaaggtgcaatgccagcaagcttcaaagttcttcatgaccctattcggaagacagatactatccatgcagattttggtgagagtgcaattggacgagttgctcctgttgactctggtttctggtggattatactgctccgtgcatatacaaagtcaacaggggatttatctctggcggaaacaacagattgccaaaagggcatcaagcttatattgactctatgtctgtcagaaggttttgatacattcccaactttgctttgcgctgatggatgctctatgattgatcgtagaatgggaatatatggttatcctattgaaattcaagctctgttctttatggcgctcagatgtgcttgtgcattgctaaaacctgatacagaaggaaaagaatttatagaccgaatttcaaagcgtttgcatgccttaagttaccacatgcgaggttacttctggcttgatttccaacaattaaatgacatataccgttataagactgaagagtattcacacactgcagtaaataagttcaatgtcattcctgattccatcccagactgggtatttgattttatgcccacacgtggtggctactttattggcaatgtgagtcctgcaaggatggattttagatggtttgctctgggtaattgtattgcaattctatcttctcttgcaaccccagagcaatcaatagctataatggatctaattgaagctcgctgggaagagttggtgggagaaatgccgctaaaaattgtttatccagcaattgaaagtcatgagtggcgaattgttactggttgtgatcctaagaataccagatggagctaccataatggagggtcttggccaggtttgttcctcccttcccttgaagtttcttggctatttctttatatgcatataaaaacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0004553 GO:0004564 GO:0004575 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0005975 GO:0005984 GO:0005985 GO:0005987 GO:0006082 GO:0006520 GO:0006807 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009311 GO:0009313 GO:0009555 GO:0009636 GO:0009653 GO:0009791 GO:0009987 GO:0010015 GO:0010035 GO:0010101 GO:0010102 GO:0010311 GO:0015926 GO:0016020 GO:0016052 GO:0016787 GO:0016798 GO:0019752 GO:0022622 GO:0032501 GO:0032502 GO:0040034 GO:0042221 GO:0042493 GO:0042542 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044262 GO:0044275 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046352 GO:0046677 GO:0048229 GO:0048364 GO:0048506 GO:0048509 GO:0048510 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0065007 GO:0071704 GO:0071944 GO:0080022 GO:0090599 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1901564 GO:1901575 GO:1901700 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_100

Protein Analysis

336

Amino Acids

38.52

Weight (kDa)

5.94

Isoelectric Point (pI)

43.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005967)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35580 AT1G35580 AT1G35580 AT4G09510 AT4G09510
fragaria_vesca	FvH4_5g31270 FvH4_5g31270
malus_domestica	MD08G1217200.v1.1 MD15G1404500.v1.1
prunus_persica	Prupe.1G556900_v2.0.a1 Prupe.1G556900_v2.0.a1 Prupe.1G556900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0226501
rosa_laevigata	RLG00000001723
rosa_multiflora	Rmu_co8504167.1_g000001 Rmu_sc0001423.1_g000053 Rmu_sc0004890.1_g000021
rosa_roxburghii	Rroxscaffold_3G00232750
rosa_rugosa	Rorug07G0237600 Rorug07G0237700 Rorug07G0237700 Rorug07G0237800
rosa_samantha	Rh7AG384900 Rh7BG371900 Rh7CG404300 Rh7DG383900
rosa_wichuraiana	Rw7G032340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	585
AciI	CCGC	2 cut(s)	269, 842
AclWI	GGATC	2 cut(s)	807, 896
AcoI	YGGCCR	1 cut(s)	944
AcsI	RAATTY	3 cut(s)	414, 485, 498
AcuI	CTGAAG	2 cut(s)	32, 612
AcvI	CACGTG	1 cut(s)	677
AdeI	CACNNNGTG	1 cut(s)	680
AfiI	CCNNNNNNNGG	2 cut(s)	652, 677
AflII	CTTAAG	1 cut(s)	520
AflIII	ACRYGT	1 cut(s)	674
AgeI	ACCGGT	1 cut(s)	78
AhdI	GACNNNNNGTC	1 cut(s)	315
AjnI	CCWGG	1 cut(s)	946
AluBI	AGCT	8 cut(s)	52, 88, 114, 301, 422, 791, 812, 924
AluI	AGCT	8 cut(s)	52, 88, 114, 301, 422, 791, 812, 924
AlwI	GGATC	2 cut(s)	807, 896
AoxI	GGCC	1 cut(s)	944
ApoI	RAATTY	3 cut(s)	414, 485, 498
ArsI	GACNNNNNNTTYG	2 cut(s)	641, 673
AsiGI	ACCGGT	1 cut(s)	78
AspLEI	GCGC	2 cut(s)	359, 439
AsuHPI	GGTGA	2 cut(s)	20, 182
BalI	TGGCCA	1 cut(s)	946
BbrPI	CACGTG	1 cut(s)	677
BbsI	GAAGAC	2 cut(s)	47, 149
BccI	CCATC	5 cut(s)	356, 650, 709, 720, 912
BciT130I	CCWGG	1 cut(s)	948
BfmI	CTRYAG	1 cut(s)	609
BfoI	RGCGCY	1 cut(s)	440
BfrI	CTTAAG	1 cut(s)	520
BglI	GCCNNNNNGGC	1 cut(s)	291
BisI	GCNGC	1 cut(s)	842
BlsI	GCNGC	1 cut(s)	843
Bme1390I	CCNGG	1 cut(s)	948
BmeRI	GACNNNNNGTC	1 cut(s)	315
BmrFI	CCNGG	1 cut(s)	948
BmrI	ACTGGG	1 cut(s)	661
BmsI	GCATC	2 cut(s)	303, 356
BmuI	ACTGGG	1 cut(s)	661
BpiI	GAAGAC	2 cut(s)	47, 149
BsaAI	YACGTR	1 cut(s)	677
BsaWI	WCCGGW	1 cut(s)	78
Bsc4I	CCNNNNNNNGG	2 cut(s)	652, 677
Bse118I	RCCGGY	1 cut(s)	78
Bse1I	ACTGG	2 cut(s)	656, 898
Bse3DI	GCAATG	3 cut(s)	108, 455, 703
BseBI	CCWGG	1 cut(s)	948
BseGI	GGATG	3 cut(s)	371, 642, 720
BseLI	CCNNNNNNNGG	2 cut(s)	652, 677
BseMI	GCAATG	3 cut(s)	108, 455, 703
BseMII	CTCAG	2 cut(s)	6, 454
BseNI	ACTGG	2 cut(s)	656, 898
BseYI	CCCAGC	2 cut(s)	60, 816
BshFI	GGCC	1 cut(s)	946
BshTI	ACCGGT	1 cut(s)	78
BsiSI	CCGG	1 cut(s)	79
BslI	CCNNNNNNNGG	2 cut(s)	652, 677
BsnI	GGCC	1 cut(s)	946
Bsp143I	GATC	3 cut(s)	379, 799, 901
BspACI	CCGC	2 cut(s)	269, 842
BspANI	GGCC	1 cut(s)	946
BspCNI	CTCAG	2 cut(s)	7, 453
BspHI	TCATGA	2 cut(s)	127, 874
BspMAI	CTGCAG	1 cut(s)	613
BspPI	GGATC	2 cut(s)	807, 896
BspTI	CTTAAG	1 cut(s)	520
BsrDI	GCAATG	3 cut(s)	108, 455, 703
BsrFI	RCCGGY	1 cut(s)	78
BsrI	ACTGG	2 cut(s)	656, 898
BssAI	RCCGGY	1 cut(s)	78
BssMI	GATC	3 cut(s)	379, 799, 901
Bst2UI	CCWGG	1 cut(s)	948
Bst4CI	ACNGT	1 cut(s)	581
Bst6I	CTCTTC	2 cut(s)	588, 816
BstAFI	CTTAAG	1 cut(s)	520
BstBAI	YACGTR	1 cut(s)	677
BstC8I	GCNNGC	4 cut(s)	108, 112, 516, 814
BstDEI	CTNAG	3 cut(s)	15, 440, 906
BstF5I	GGATG	3 cut(s)	371, 642, 720
BstH2I	RGCGCY	1 cut(s)	440
BstHHI	GCGC	2 cut(s)	359, 439
BstKTI	GATC	3 cut(s)	382, 802, 904
BstMBI	GATC	3 cut(s)	379, 799, 901
BstMWI	GCNNNNNNNGC	2 cut(s)	107, 291
BstNI	CCWGG	1 cut(s)	948
BstNSI	RCATGY	2 cut(s)	518, 535
BstSCI	CCNGG	1 cut(s)	946
BstSFI	CTRYAG	1 cut(s)	609
BstV2I	GAAGAC	2 cut(s)	47, 149
BstX2I	RGATCY	1 cut(s)	799
BstYI	RGATCY	1 cut(s)	799
BsuRI	GGCC	1 cut(s)	946
BtsCI	GGATG	3 cut(s)	371, 642, 720
BtsI	GCAGTG	1 cut(s)	606
BtsIMutI	CAGTG	1 cut(s)	606
Cac8I	GCNNGC	4 cut(s)	108, 112, 516, 814
CciI	TCATGA	2 cut(s)	127, 874
CfoI	GCGC	2 cut(s)	359, 439
Cfr10I	RCCGGY	1 cut(s)	78
CspAI	ACCGGT	1 cut(s)	78
CviAII	CATG	5 cut(s)	128, 158, 515, 532, 875
DdeI	CTNAG	3 cut(s)	15, 440, 906
DpnI	GATC	3 cut(s)	381, 801, 903
DpnII	GATC	3 cut(s)	379, 799, 901
DraIII	CACNNNGTG	1 cut(s)	680
DriI	GACNNNNNGTC	1 cut(s)	315
EaeI	YGGCCR	1 cut(s)	944
Eam1104I	CTCTTC	2 cut(s)	588, 816
Eam1105I	GACNNNNNGTC	1 cut(s)	315
EarI	CTCTTC	2 cut(s)	588, 816
EciI	GGCGGA	1 cut(s)	284
Eco57I	CTGAAG	2 cut(s)	32, 612
Eco72I	CACGTG	1 cut(s)	677
EcoRII	CCWGG	1 cut(s)	946
EcoT22I	ATGCAT	1 cut(s)	999
FaeI	CATG	5 cut(s)	131, 161, 518, 535, 878
FatI	CATG	5 cut(s)	127, 157, 514, 531, 874
Fnu4HI	GCNGC	1 cut(s)	842
FokI	GGATG	3 cut(s)	378, 629, 727
Fsp4HI	GCNGC	1 cut(s)	842
GlaI	GCGC	2 cut(s)	358, 438
GluI	GCNGC	1 cut(s)	842
GsaI	CCCAGC	2 cut(s)	64, 820
HaeII	RGCGCY	1 cut(s)	440
HaeIII	GGCC	1 cut(s)	946
HapII	CCGG	1 cut(s)	79
HhaI	GCGC	2 cut(s)	359, 439
Hin1II	CATG	5 cut(s)	131, 161, 518, 535, 878
Hin6I	GCGC	2 cut(s)	357, 437
HinP1I	GCGC	2 cut(s)	357, 437
HincII	GTYRAC	2 cut(s)	202, 249
HindII	GTYRAC	2 cut(s)	202, 249
HindIII	AAGCTT	3 cut(s)	86, 112, 299
HinfI	GANTC	4 cut(s)	203, 310, 638, 703
HpaII	CCGG	1 cut(s)	79
HphI	GGTGA	2 cut(s)	20, 182
Hpy166II	GTNNAC	2 cut(s)	202, 249
Hpy188I	TCNGA	3 cut(s)	141, 325, 443
Hpy188III	TCNNGA	4 cut(s)	37, 128, 635, 875
Hpy8I	GTNNAC	2 cut(s)	202, 249
HpyAV	CCTTC	5 cut(s)	56, 89, 320, 470, 972
HpyCH4III	ACNGT	1 cut(s)	581
HpyCH4IV	ACGT	1 cut(s)	676
HpyF10VI	GCNNNNNNNGC	2 cut(s)	107, 291
HpyF3I	CTNAG	3 cut(s)	15, 440, 906
HpySE526I	ACGT	1 cut(s)	676
Hsp92II	CATG	5 cut(s)	131, 161, 518, 535, 878
HspAI	GCGC	2 cut(s)	357, 437
Kzo9I	GATC	3 cut(s)	379, 799, 901
LmnI	GCTCC	3 cut(s)	199, 234, 921
LweI	GCATC	2 cut(s)	303, 356
MaeII	ACGT	1 cut(s)	676
MaeIII	GTNAC	3 cut(s)	524, 539, 889
MalI	GATC	3 cut(s)	381, 801, 903
MboI	GATC	3 cut(s)	379, 799, 901
MboII	GAAGA	6 cut(s)	52, 116, 154, 605, 753, 833
MfeI	CAATTG	2 cut(s)	180, 864
MflI	RGATCY	1 cut(s)	799
MlsI	TGGCCA	1 cut(s)	946
MluNI	TGGCCA	1 cut(s)	946
MlyI	GAGTC	3 cut(s)	197, 304, 712
MmeI	TCCRAC	1 cut(s)	583
MnlI	CCTC	3 cut(s)	530, 929, 968
Mox20I	TGGCCA	1 cut(s)	946
Mph1103I	ATGCAT	1 cut(s)	999
MscI	TGGCCA	1 cut(s)	946
MseI	TTAA	2 cut(s)	521, 566
Msp20I	TGGCCA	1 cut(s)	946
MspCI	CTTAAG	1 cut(s)	520
MspI	CCGG	1 cut(s)	79
MspR9I	CCNGG	1 cut(s)	948
MunI	CAATTG	2 cut(s)	180, 864
MvaI	CCWGG	1 cut(s)	948
MwoI	GCNNNNNNNGC	2 cut(s)	107, 291
NdeII	GATC	3 cut(s)	379, 799, 901
NlaIII	CATG	5 cut(s)	131, 161, 518, 535, 878
NsiI	ATGCAT	1 cut(s)	999
NspI	RCATGY	2 cut(s)	518, 535
PaeI	GCATGC	1 cut(s)	518
PagI	TCATGA	2 cut(s)	127, 874
PfeI	GAWTC	1 cut(s)	638
PinAI	ACCGGT	1 cut(s)	78
PkrI	GCNGC	1 cut(s)	843
PleI	GAGTC	3 cut(s)	197, 304, 711
PmaCI	CACGTG	1 cut(s)	677
PmlI	CACGTG	1 cut(s)	677
PpsI	GAGTC	3 cut(s)	197, 304, 711
Ppu21I	YACGTR	1 cut(s)	677
PsiI	TTATAA	1 cut(s)	585
Psp6I	CCWGG	1 cut(s)	946
PspCI	CACGTG	1 cut(s)	677
PspFI	CCCAGC	2 cut(s)	60, 816
PspGI	CCWGG	1 cut(s)	946
PstI	CTGCAG	1 cut(s)	613
PsuI	RGATCY	1 cut(s)	799
SaqAI	TTAA	2 cut(s)	521, 566
SatI	GCNGC	1 cut(s)	842
Sau3AI	GATC	3 cut(s)	379, 799, 901
SchI	GAGTC	3 cut(s)	197, 304, 712
ScrFI	CCNGG	1 cut(s)	948
SfaNI	GCATC	2 cut(s)	303, 356
SfcI	CTRYAG	1 cut(s)	609
SmlI	CTYRAG	1 cut(s)	520
SmoI	CTYRAG	1 cut(s)	520
SphI	GCATGC	1 cut(s)	518
SsiI	CCGC	2 cut(s)	269, 842
StyD4I	CCNGG	1 cut(s)	946
TaaI	ACNGT	1 cut(s)	581
TaiI	ACGT	1 cut(s)	679
TaqII	GACCGA	1 cut(s)	510
TauI	GCSGC	1 cut(s)	844
TfiI	GAWTC	1 cut(s)	638
Tru1I	TTAA	2 cut(s)	521, 566
Tru9I	TTAA	2 cut(s)	521, 566
TscAI	CASTG	1 cut(s)	613
TspDTI	ATGAA	2 cut(s)	17, 116
TspGWI	ACGGA	1 cut(s)	221
TspRI	CASTG	1 cut(s)	613
Vha464I	CTTAAG	1 cut(s)	520
XapI	RAATTY	3 cut(s)	414, 485, 498
XceI	RCATGY	2 cut(s)	518, 535
XcmI	CCANNNNNNNNNTGG	1 cut(s)	164
Zsp2I	ATGCAT	1 cut(s)	999

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.