Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0005967

Physical Location & Seq

Genomic Coordinates Reverse (-)

21786870 .. 21787459

Gene Structure 590 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0237600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGTTGGAAGCTGAAGATTGTGTAATTTGTCGCTCCTCGACTGTCAAGAAGGTTGTCACATCCTGTGCTCACTTTTTTTGCTTTCAGTGTATCTGGACATTGGTGTATGTGAATGAAGAAAGGGTGTCCTCAACAACTCCATCTACCAAGGCAAAAGTTCTTTTGTCCTACCTTCTGTCAACAAGGATGCAGAATACTTCTACATGCAACAAATCAGTAGCTTTTTCACAGTTCAAAACCTCTCTGCAGAATCTCAACCTAGTGCTCAGAGAAGCTGGGTTCCGGACCCTGAATTTGTTTAATACCACAAGCACATCTGGAAAACGCAAGGCAATCCTGGAATTTTTTGCAGCAGAGGGAGAAGATGCGCCCACAGTTCTACTAGCCAATCTGAAGAGTACTGATGAAGAAAGCATCAACCTTACTGTTGCTTGTAAGGGATATTTTTTGGAGCCCTATGTGTCCGTTGTTGCTGAGCAATGTGCAATTTCGACTATTCACCAGATCAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0004553 GO:0004564 GO:0004575 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0005975 GO:0005984 GO:0005985 GO:0005987 GO:0006082 GO:0006520 GO:0006807 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009311 GO:0009313 GO:0009555 GO:0009636 GO:0009653 GO:0009791 GO:0009987 GO:0010015 GO:0010035 GO:0010101 GO:0010102 GO:0010311 GO:0015926 GO:0016020 GO:0016052 GO:0016787 GO:0016798 GO:0019752 GO:0022622 GO:0032501 GO:0032502 GO:0040034 GO:0042221 GO:0042493 GO:0042542 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044262 GO:0044275 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046352 GO:0046677 GO:0048229 GO:0048364 GO:0048506 GO:0048509 GO:0048510 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0065007 GO:0071704 GO:0071944 GO:0080022 GO:0090599 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1901564 GO:1901575 GO:1901700 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_100

Protein Analysis

170

Amino Acids

18.9

Weight (kDa)

8.11

Isoelectric Point (pI)

29.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005967)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35580 AT1G35580 AT1G35580 AT4G09510 AT4G09510
fragaria_vesca	FvH4_5g31270 FvH4_5g31270
malus_domestica	MD08G1217200.v1.1 MD15G1404500.v1.1
prunus_persica	Prupe.1G556900_v2.0.a1 Prupe.1G556900_v2.0.a1 Prupe.1G556900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0226501
rosa_laevigata	RLG00000001723
rosa_multiflora	Rmu_co8504167.1_g000001 Rmu_sc0001423.1_g000053 Rmu_sc0004890.1_g000021
rosa_roxburghii	Rroxscaffold_3G00232750
rosa_rugosa	Rorug07G0237600 Rorug07G0237700 Rorug07G0237700 Rorug07G0237800
rosa_samantha	Rh7AG384900 Rh7BG371900 Rh7CG404300 Rh7DG383900
rosa_wichuraiana	Rw7G032340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	282
AcsI	RAATTY	2 cut(s)	292, 341
AcuI	CTGAAG	2 cut(s)	33, 413
AfaI	GTAC	1 cut(s)	400
AgsI	TTSAA	1 cut(s)	235
AjnI	CCWGG	1 cut(s)	336
AluBI	AGCT	3 cut(s)	11, 221, 275
AluI	AGCT	3 cut(s)	11, 221, 275
Alw21I	GWGCWC	2 cut(s)	70, 267
Aor13HI	TCCGGA	1 cut(s)	282
ApeKI	GCWGC	1 cut(s)	350
ApoI	RAATTY	2 cut(s)	292, 341
ArsI	GACNNNNNNTTYG	2 cut(s)	277, 309
AspLEI	GCGC	1 cut(s)	370
AspS9I	GGNCC	1 cut(s)	285
AsuHPI	GGTGA	1 cut(s)	491
AvaII	GGWCC	1 cut(s)	285
BanII	GRGCYC	1 cut(s)	456
Bbv12I	GWGCWC	2 cut(s)	70, 267
BbvI	GCAGC	1 cut(s)	362
BccI	CCATC	1 cut(s)	148
BciT130I	CCWGG	1 cut(s)	338
BfaI	CTAG	2 cut(s)	260, 383
BfmI	CTRYAG	1 cut(s)	245
BisI	GCNGC	1 cut(s)	351
BlpI	GCTNAGC	1 cut(s)	474
BlsI	GCNGC	1 cut(s)	352
BmcAI	AGTACT	1 cut(s)	400
Bme1390I	CCNGG	1 cut(s)	338
Bme18I	GGWCC	1 cut(s)	285
BmgT120I	GGNCC	1 cut(s)	285
BmiI	GGNNCC	3 cut(s)	281, 287, 453
BmrFI	CCNGG	1 cut(s)	338
BmsI	GCATC	3 cut(s)	177, 355, 423
Bpu1102I	GCTNAGC	1 cut(s)	474
BsaJI	CCNNGG	1 cut(s)	147
BsaWI	WCCGGW	1 cut(s)	282
Bse3DI	GCAATG	1 cut(s)	485
BseAI	TCCGGA	1 cut(s)	282
BseBI	CCWGG	1 cut(s)	338
BseDI	CCNNGG	1 cut(s)	147
BseGI	GGATG	2 cut(s)	59, 192
BseMI	GCAATG	1 cut(s)	485
BseMII	CTCAG	2 cut(s)	280, 465
BseRI	GAGGAG	1 cut(s)	25
BseXI	GCAGC	1 cut(s)	362
BseYI	CCCAGC	1 cut(s)	275
BsiHKAI	GWGCWC	2 cut(s)	70, 267
BsiSI	CCGG	1 cut(s)	283
Bsp1286I	GDGCHC	3 cut(s)	70, 267, 456
Bsp13I	TCCGGA	1 cut(s)	282
Bsp143I	GATC	1 cut(s)	504
Bsp1720I	GCTNAGC	1 cut(s)	474
BspCNI	CTCAG	2 cut(s)	279, 466
BspEI	TCCGGA	1 cut(s)	282
BspLI	GGNNCC	3 cut(s)	281, 287, 453
BspMAI	CTGCAG	1 cut(s)	249
BsrDI	GCAATG	1 cut(s)	485
BssECI	CCNNGG	1 cut(s)	147
BssMI	GATC	1 cut(s)	504
BssT1I	CCWWGG	1 cut(s)	147
Bst2UI	CCWGG	1 cut(s)	338
Bst4CI	ACNGT	4 cut(s)	43, 231, 376, 427
Bst6I	CTCTTC	1 cut(s)	389
BstDEI	CTNAG	2 cut(s)	266, 474
BstF5I	GGATG	2 cut(s)	59, 192
BstHHI	GCGC	1 cut(s)	370
BstKTI	GATC	1 cut(s)	507
BstMBI	GATC	1 cut(s)	504
BstNI	CCWGG	1 cut(s)	338
BstNSI	RCATGY	1 cut(s)	207
BstSCI	CCNGG	1 cut(s)	336
BstSFI	CTRYAG	1 cut(s)	245
BstV1I	GCAGC	1 cut(s)	362
BtsCI	GGATG	2 cut(s)	59, 192
BtsIMutI	CAGTG	1 cut(s)	92
CfoI	GCGC	1 cut(s)	370
Cfr13I	GGNCC	1 cut(s)	285
Csp6I	GTAC	1 cut(s)	399
CviAII	CATG	1 cut(s)	204
CviJI	RGCY	5 cut(s)	11, 221, 275, 386, 454
CviKI_1	RGCY	5 cut(s)	11, 221, 275, 386, 454
CviQI	GTAC	1 cut(s)	399
DdeI	CTNAG	2 cut(s)	266, 474
DpnI	GATC	1 cut(s)	506
DpnII	GATC	1 cut(s)	504
Eam1104I	CTCTTC	1 cut(s)	389
EarI	CTCTTC	1 cut(s)	389
Eco130I	CCWWGG	1 cut(s)	147
Eco24I	GRGCYC	1 cut(s)	456
Eco47I	GGWCC	1 cut(s)	285
Eco57I	CTGAAG	2 cut(s)	33, 413
EcoRII	CCWGG	1 cut(s)	336
EcoT14I	CCWWGG	1 cut(s)	147
EcoT38I	GRGCYC	1 cut(s)	456
ErhI	CCWWGG	1 cut(s)	147
FaeI	CATG	1 cut(s)	207
FaiI	YATR	3 cut(s)	108, 205, 459
FatI	CATG	1 cut(s)	203
Fnu4HI	GCNGC	1 cut(s)	351
FokI	GGATG	2 cut(s)	46, 199
FriOI	GRGCYC	1 cut(s)	456
Fsp4HI	GCNGC	1 cut(s)	351
FspBI	CTAG	2 cut(s)	260, 383
GlaI	GCGC	1 cut(s)	369
GluI	GCNGC	1 cut(s)	351
GsaI	CCCAGC	1 cut(s)	279
HapII	CCGG	1 cut(s)	283
HhaI	GCGC	1 cut(s)	370
Hin1II	CATG	1 cut(s)	207
Hin6I	GCGC	1 cut(s)	368
HinP1I	GCGC	1 cut(s)	368
HincII	GTYRAC	1 cut(s)	180
HindII	GTYRAC	1 cut(s)	180
HinfI	GANTC	1 cut(s)	250
HpaII	CCGG	1 cut(s)	283
HphI	GGTGA	1 cut(s)	491
Hpy166II	GTNNAC	1 cut(s)	180
Hpy188I	TCNGA	3 cut(s)	269, 393, 509
Hpy188III	TCNNGA	4 cut(s)	46, 94, 283, 318
Hpy8I	GTNNAC	1 cut(s)	180
HpyAV	CCTTC	2 cut(s)	43, 182
HpyCH4III	ACNGT	4 cut(s)	43, 231, 376, 427
HpyCH4V	TGCA	5 cut(s)	190, 207, 247, 350, 485
HpyF3I	CTNAG	2 cut(s)	266, 474
Hsp92II	CATG	1 cut(s)	207
HspAI	GCGC	1 cut(s)	368
Kpn2I	TCCGGA	1 cut(s)	282
Kzo9I	GATC	1 cut(s)	504
LmnI	GCTCC	2 cut(s)	38, 451
LpnPI	CCDG	8 cut(s)	76, 79, 261, 296, 302, 303, 323, 350
Lsp1109I	GCAGC	1 cut(s)	362
LweI	GCATC	3 cut(s)	177, 355, 423
MaeI	CTAG	2 cut(s)	260, 383
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	1 cut(s)	506
MboI	GATC	1 cut(s)	504
MboII	GAAGA	5 cut(s)	26, 128, 374, 406, 419
MhlI	GDGCHC	3 cut(s)	70, 267, 456
MluCI	AATT	4 cut(s)	24, 292, 341, 486
MnlI	CCTC	4 cut(s)	46, 139, 250, 349
MroI	TCCGGA	1 cut(s)	282
MseI	TTAA	1 cut(s)	300
MspI	CCGG	1 cut(s)	283
MspR9I	CCNGG	1 cut(s)	338
MvaI	CCWGG	1 cut(s)	338
NdeII	GATC	1 cut(s)	504
NlaIII	CATG	1 cut(s)	207
NlaIV	GGNNCC	3 cut(s)	281, 287, 453
NmuCI	GTSAC	1 cut(s)	55
NspI	RCATGY	1 cut(s)	207
PfeI	GAWTC	1 cut(s)	250
PfoI	TCCNGGA	1 cut(s)	336
PkrI	GCNGC	1 cut(s)	352
Psp6I	CCWGG	1 cut(s)	336
PspFI	CCCAGC	1 cut(s)	275
PspGI	CCWGG	1 cut(s)	336
PspN4I	GGNNCC	3 cut(s)	281, 287, 453
PspPI	GGNCC	1 cut(s)	285
PstI	CTGCAG	1 cut(s)	249
RsaI	GTAC	1 cut(s)	400
RsaNI	GTAC	1 cut(s)	399
SaqAI	TTAA	1 cut(s)	300
SatI	GCNGC	1 cut(s)	351
Sau3AI	GATC	1 cut(s)	504
Sau96I	GGNCC	1 cut(s)	285
ScaI	AGTACT	1 cut(s)	400
ScrFI	CCNGG	1 cut(s)	338
SduI	GDGCHC	3 cut(s)	70, 267, 456
SetI	ASST	8 cut(s)	13, 54, 174, 223, 242, 261, 277, 423
SfaNI	GCATC	3 cut(s)	177, 355, 423
SfcI	CTRYAG	1 cut(s)	245
SinI	GGWCC	1 cut(s)	285
Sse9I	AATT	4 cut(s)	24, 292, 341, 486
SspMI	CTAG	2 cut(s)	260, 383
StyD4I	CCNGG	1 cut(s)	336
StyI	CCWWGG	1 cut(s)	147
TaaI	ACNGT	4 cut(s)	43, 231, 376, 427
TaqI	TCGA	2 cut(s)	38, 491
TasI	AATT	4 cut(s)	24, 292, 341, 486
TatI	WGTACW	1 cut(s)	398
TfiI	GAWTC	1 cut(s)	250
Tru1I	TTAA	1 cut(s)	300
Tru9I	TTAA	1 cut(s)	300
TscAI	CASTG	1 cut(s)	92
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	1 cut(s)	350
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	2 cut(s)	129, 420
TspGWI	ACGGA	1 cut(s)	454
TspRI	CASTG	1 cut(s)	92
VpaK11BI	GGWCC	1 cut(s)	285
XapI	RAATTY	2 cut(s)	292, 341
XceI	RCATGY	1 cut(s)	207
XspI	CTAG	2 cut(s)	260, 383
ZrmI	AGTACT	1 cut(s)	400

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.