Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004890.1

Orthogroup ID

OG0005967

Physical Location & Seq

Genomic Coordinates Reverse (-)

98531 .. 102765

Gene Structure 4235 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004890.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1245 bp

atgaatggtgagcctgagatagtgaaaaactttctcttgaagacccttcagcttcaaggctgggaaaaaagaatagaccggttcaagcttggagaaggtgcaatgccagcaagcttcaaagttcttcatgaccctattcggaagacagatactatccatgcagattttggtgagagtgcaattggacgagttgctcctgttgactctggtttctggtggattatactgctccgtgcatatacaaagtcaacaggggatttatctctggcggaaacaacagattgccaaaagggcatcaagcttatattgactctatgtctgtcagaaggttttgatacattcccaactttgctttgcgctgatggatgctctatgattgatcgtagaatgggaatatatggttatcctattgaaattcaagctctgttctttatggcgctcagatgtgcttgtgcattgctaaaacctgatacagaaggaaaagaatttatagaccgaatttcaaagcgtttgcatgccttaagttaccacatgcgaggttacttctggcttgatttccaacaattaaatgacatataccgttataagactgaagagtattcacacactgcagtaaataagttcaatgtcattcctgattccatcccagactgggtatttgattttatgcccacacgtggtggctactttattggcaatgtgagtcctgcaaggatggattttagatggtttgctctgggtaattgtattgcaattctatcttctcttgcaaccccagagcaatcaatagctataatggatctaattgaagctcgctgggaagagttggtgggagaaatgccgctaaaaattgtttatccagcaattgaaagtcatgagtggcgaattgttactggttgtgatcctaagaataccagatggagctaccataatggagggtcttggccagtgctattatggatgctaacggctgcctgcattaaaacgggacgaccacaaattgcaagaaagacaattgagcttgctgagagtcgtctgctaaaagattcttggccagaatattatgatgggaaactagggagatatattggcaaacaggcaaggaagtaccagacatggtcaatatctggatatctggttgcaaagatgatgctagaagatccatctcacttgggtatgatctcactggaagaggacaagcaaatgaagcctgtaattaggagatcatcatcgtggacttgctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0004553 GO:0004564 GO:0004575 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0005975 GO:0005984 GO:0005985 GO:0005987 GO:0006082 GO:0006520 GO:0006807 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009311 GO:0009313 GO:0009555 GO:0009636 GO:0009653 GO:0009791 GO:0009987 GO:0010015 GO:0010035 GO:0010101 GO:0010102 GO:0010311 GO:0015926 GO:0016020 GO:0016052 GO:0016787 GO:0016798 GO:0019752 GO:0022622 GO:0032501 GO:0032502 GO:0040034 GO:0042221 GO:0042493 GO:0042542 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044262 GO:0044275 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046352 GO:0046677 GO:0048229 GO:0048364 GO:0048506 GO:0048509 GO:0048510 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0065007 GO:0071704 GO:0071944 GO:0080022 GO:0090599 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1901564 GO:1901575 GO:1901700 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_100

Protein Analysis

414

Amino Acids

47.48

Weight (kDa)

7.53

Isoelectric Point (pI)

45.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005967)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35580 AT1G35580 AT1G35580 AT4G09510 AT4G09510
fragaria_vesca	FvH4_5g31270 FvH4_5g31270
malus_domestica	MD08G1217200.v1.1 MD15G1404500.v1.1
prunus_persica	Prupe.1G556900_v2.0.a1 Prupe.1G556900_v2.0.a1 Prupe.1G556900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0226501
rosa_laevigata	RLG00000001723
rosa_multiflora	Rmu_co8504167.1_g000001 Rmu_sc0001423.1_g000053 Rmu_sc0004890.1_g000021
rosa_roxburghii	Rroxscaffold_3G00232750
rosa_rugosa	Rorug07G0237600 Rorug07G0237700 Rorug07G0237700 Rorug07G0237800
rosa_samantha	Rh7AG384900 Rh7BG371900 Rh7CG404300 Rh7DG383900
rosa_wichuraiana	Rw7G032340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	585
AciI	CCGC	2 cut(s)	269, 842
AclWI	GGATC	3 cut(s)	807, 896, 1154
AcoI	YGGCCR	2 cut(s)	944, 1052
AcsI	RAATTY	3 cut(s)	414, 485, 498
AcuI	CTGAAG	2 cut(s)	32, 612
AcvI	CACGTG	1 cut(s)	677
AdeI	CACNNNGTG	1 cut(s)	680
AfaI	GTAC	1 cut(s)	1109
AfiI	CCNNNNNNNGG	2 cut(s)	652, 677
AflII	CTTAAG	1 cut(s)	520
AflIII	ACRYGT	1 cut(s)	674
AgeI	ACCGGT	1 cut(s)	78
AhdI	GACNNNNNGTC	1 cut(s)	315
AluBI	AGCT	9 cut(s)	52, 88, 114, 301, 422, 791, 812, 924, 1021
AluI	AGCT	9 cut(s)	52, 88, 114, 301, 422, 791, 812, 924, 1021
AlwI	GGATC	3 cut(s)	807, 896, 1154
AoxI	GGCC	2 cut(s)	944, 1052
ApeKI	GCWGC	1 cut(s)	971
ApoI	RAATTY	3 cut(s)	414, 485, 498
ArsI	GACNNNNNNTTYG	2 cut(s)	641, 673
AsiGI	ACCGGT	1 cut(s)	78
AspLEI	GCGC	2 cut(s)	359, 439
AsuHPI	GGTGA	2 cut(s)	20, 182
BalI	TGGCCA	2 cut(s)	946, 1054
BbrPI	CACGTG	1 cut(s)	677
BbsI	GAAGAC	2 cut(s)	47, 149
BbvI	GCAGC	1 cut(s)	958
BccI	CCATC	7 cut(s)	356, 650, 709, 720, 912, 1061, 1171
BceAI	ACGGC	1 cut(s)	984
BfaI	CTAG	2 cut(s)	1076, 1154
BfmI	CTRYAG	1 cut(s)	609
BfoI	RGCGCY	1 cut(s)	440
BfrI	CTTAAG	1 cut(s)	520
BglI	GCCNNNNNGGC	1 cut(s)	291
BisI	GCNGC	2 cut(s)	842, 972
BlsI	GCNGC	2 cut(s)	843, 973
BmeRI	GACNNNNNGTC	1 cut(s)	315
BmrI	ACTGGG	1 cut(s)	661
BmsI	GCATC	4 cut(s)	303, 356, 951, 1140
BmuI	ACTGGG	1 cut(s)	661
BpiI	GAAGAC	2 cut(s)	47, 149
BsaAI	YACGTR	1 cut(s)	677
BsaBI	GATNNNNATC	1 cut(s)	1228
BsaWI	WCCGGW	1 cut(s)	78
Bsc4I	CCNNNNNNNGG	2 cut(s)	652, 677
Bse118I	RCCGGY	1 cut(s)	78
Bse1I	ACTGG	4 cut(s)	656, 898, 947, 1191
Bse3DI	GCAATG	3 cut(s)	108, 455, 703
Bse8I	GATNNNNATC	1 cut(s)	1228
BseGI	GGATG	4 cut(s)	371, 642, 720, 966
BseJI	GATNNNNATC	1 cut(s)	1228
BseLI	CCNNNNNNNGG	2 cut(s)	652, 677
BseMI	GCAATG	3 cut(s)	108, 455, 703
BseMII	CTCAG	3 cut(s)	6, 454, 1017
BseNI	ACTGG	4 cut(s)	656, 898, 947, 1191
BseXI	GCAGC	1 cut(s)	958
BseYI	CCCAGC	2 cut(s)	60, 816
BshFI	GGCC	2 cut(s)	946, 1054
BshTI	ACCGGT	1 cut(s)	78
BsiSI	CCGG	1 cut(s)	79
BslFI	GGGAC	1 cut(s)	1002
BslI	CCNNNNNNNGG	2 cut(s)	652, 677
BsmFI	GGGAC	1 cut(s)	1002
BsnI	GGCC	2 cut(s)	946, 1054
Bsp143I	GATC	6 cut(s)	379, 799, 901, 1159, 1179, 1223
BspACI	CCGC	2 cut(s)	269, 842
BspANI	GGCC	2 cut(s)	946, 1054
BspCNI	CTCAG	3 cut(s)	7, 453, 1018
BspHI	TCATGA	2 cut(s)	127, 874
BspMAI	CTGCAG	1 cut(s)	613
BspPI	GGATC	3 cut(s)	807, 896, 1154
BspTI	CTTAAG	1 cut(s)	520
BsrDI	GCAATG	3 cut(s)	108, 455, 703
BsrFI	RCCGGY	1 cut(s)	78
BsrI	ACTGG	4 cut(s)	656, 898, 947, 1191
BssAI	RCCGGY	1 cut(s)	78
BssMI	GATC	6 cut(s)	379, 799, 901, 1159, 1179, 1223
Bst4CI	ACNGT	1 cut(s)	581
Bst6I	CTCTTC	3 cut(s)	588, 816, 1185
BstAFI	CTTAAG	1 cut(s)	520
BstBAI	YACGTR	1 cut(s)	677
BstC8I	GCNNGC	6 cut(s)	108, 112, 516, 814, 976, 1023
BstDEI	CTNAG	4 cut(s)	15, 440, 906, 1026
BstF5I	GGATG	4 cut(s)	371, 642, 720, 966
BstH2I	RGCGCY	1 cut(s)	440
BstHHI	GCGC	2 cut(s)	359, 439
BstKTI	GATC	6 cut(s)	382, 802, 904, 1162, 1182, 1226
BstMBI	GATC	6 cut(s)	379, 799, 901, 1159, 1179, 1223
BstMWI	GCNNNNNNNGC	3 cut(s)	107, 291, 1207
BstNSI	RCATGY	2 cut(s)	518, 535
BstSFI	CTRYAG	1 cut(s)	609
BstV1I	GCAGC	1 cut(s)	958
BstV2I	GAAGAC	2 cut(s)	47, 149
BstX2I	RGATCY	2 cut(s)	799, 1159
BstYI	RGATCY	2 cut(s)	799, 1159
BsuRI	GGCC	2 cut(s)	946, 1054
BtsCI	GGATG	4 cut(s)	371, 642, 720, 966
BtsI	GCAGTG	1 cut(s)	606
BtsIMutI	CAGTG	3 cut(s)	606, 954, 1184
Cac8I	GCNNGC	6 cut(s)	108, 112, 516, 814, 976, 1023
CciI	TCATGA	2 cut(s)	127, 874
CfoI	GCGC	2 cut(s)	359, 439
Cfr10I	RCCGGY	1 cut(s)	78
Csp6I	GTAC	1 cut(s)	1108
CspAI	ACCGGT	1 cut(s)	78
CviAII	CATG	6 cut(s)	128, 158, 515, 532, 875, 1116
CviQI	GTAC	1 cut(s)	1108
DdeI	CTNAG	4 cut(s)	15, 440, 906, 1026
DpnI	GATC	6 cut(s)	381, 801, 903, 1161, 1181, 1225
DpnII	GATC	6 cut(s)	379, 799, 901, 1159, 1179, 1223
DraIII	CACNNNGTG	1 cut(s)	680
DriI	GACNNNNNGTC	1 cut(s)	315
EaeI	YGGCCR	2 cut(s)	944, 1052
Eam1104I	CTCTTC	3 cut(s)	588, 816, 1185
Eam1105I	GACNNNNNGTC	1 cut(s)	315
EarI	CTCTTC	3 cut(s)	588, 816, 1185
EciI	GGCGGA	1 cut(s)	284
Eco32I	GATATC	1 cut(s)	1133
Eco57I	CTGAAG	2 cut(s)	32, 612
Eco72I	CACGTG	1 cut(s)	677
EcoRV	GATATC	1 cut(s)	1133
FaeI	CATG	6 cut(s)	131, 161, 518, 535, 878, 1119
FaqI	GGGAC	1 cut(s)	1002
FatI	CATG	6 cut(s)	127, 157, 514, 531, 874, 1115
Fnu4HI	GCNGC	2 cut(s)	842, 972
FokI	GGATG	4 cut(s)	378, 629, 727, 973
Fsp4HI	GCNGC	2 cut(s)	842, 972
FspBI	CTAG	2 cut(s)	1076, 1154
GlaI	GCGC	2 cut(s)	358, 438
GluI	GCNGC	2 cut(s)	842, 972
GsaI	CCCAGC	2 cut(s)	64, 820
HaeII	RGCGCY	1 cut(s)	440
HaeIII	GGCC	2 cut(s)	946, 1054
HapII	CCGG	1 cut(s)	79
HhaI	GCGC	2 cut(s)	359, 439
Hin1II	CATG	6 cut(s)	131, 161, 518, 535, 878, 1119
Hin6I	GCGC	2 cut(s)	357, 437
HinP1I	GCGC	2 cut(s)	357, 437
HincII	GTYRAC	2 cut(s)	202, 249
HindII	GTYRAC	2 cut(s)	202, 249
HindIII	AAGCTT	3 cut(s)	86, 112, 299
HinfI	GANTC	6 cut(s)	203, 310, 638, 703, 1030, 1046
HpaII	CCGG	1 cut(s)	79
HphI	GGTGA	2 cut(s)	20, 182
Hpy166II	GTNNAC	3 cut(s)	202, 249, 1236
Hpy188I	TCNGA	3 cut(s)	141, 325, 443
Hpy188III	TCNNGA	5 cut(s)	37, 128, 635, 875, 1128
Hpy8I	GTNNAC	3 cut(s)	202, 249, 1236
HpyAV	CCTTC	4 cut(s)	56, 89, 320, 470
HpyCH4III	ACNGT	1 cut(s)	581
HpyCH4IV	ACGT	1 cut(s)	676
HpyF10VI	GCNNNNNNNGC	3 cut(s)	107, 291, 1207
HpyF3I	CTNAG	4 cut(s)	15, 440, 906, 1026
HpySE526I	ACGT	1 cut(s)	676
Hsp92II	CATG	6 cut(s)	131, 161, 518, 535, 878, 1119
HspAI	GCGC	2 cut(s)	357, 437
Kzo9I	GATC	6 cut(s)	379, 799, 901, 1159, 1179, 1223
LmnI	GCTCC	3 cut(s)	199, 234, 921
Lsp1109I	GCAGC	1 cut(s)	958
LweI	GCATC	4 cut(s)	303, 356, 951, 1140
MaeI	CTAG	2 cut(s)	1076, 1154
MaeII	ACGT	1 cut(s)	676
MaeIII	GTNAC	3 cut(s)	524, 539, 889
MalI	GATC	6 cut(s)	381, 801, 903, 1161, 1181, 1225
MboI	GATC	6 cut(s)	379, 799, 901, 1159, 1179, 1223
MboII	GAAGA	8 cut(s)	52, 116, 154, 605, 753, 833, 1169, 1202
MfeI	CAATTG	3 cut(s)	180, 864, 1014
MflI	RGATCY	2 cut(s)	799, 1159
MlsI	TGGCCA	2 cut(s)	946, 1054
MluNI	TGGCCA	2 cut(s)	946, 1054
MlyI	GAGTC	4 cut(s)	197, 304, 712, 1039
MmeI	TCCRAC	1 cut(s)	583
MnlI	CCTC	3 cut(s)	530, 929, 1186
Mox20I	TGGCCA	2 cut(s)	946, 1054
MscI	TGGCCA	2 cut(s)	946, 1054
MseI	TTAA	3 cut(s)	521, 566, 981
MslI	CAYNNNNRTG	1 cut(s)	1231
Msp20I	TGGCCA	2 cut(s)	946, 1054
MspCI	CTTAAG	1 cut(s)	520
MspI	CCGG	1 cut(s)	79
MunI	CAATTG	3 cut(s)	180, 864, 1014
MwoI	GCNNNNNNNGC	3 cut(s)	107, 291, 1207
NdeII	GATC	6 cut(s)	379, 799, 901, 1159, 1179, 1223
NlaIII	CATG	6 cut(s)	131, 161, 518, 535, 878, 1119
NspI	RCATGY	2 cut(s)	518, 535
PaeI	GCATGC	1 cut(s)	518
PagI	TCATGA	2 cut(s)	127, 874
PfeI	GAWTC	2 cut(s)	638, 1046
PflFI	GACNNNGTC	1 cut(s)	1117
PinAI	ACCGGT	1 cut(s)	78
PkrI	GCNGC	2 cut(s)	843, 973
PleI	GAGTC	4 cut(s)	197, 304, 711, 1038
PmaCI	CACGTG	1 cut(s)	677
PmlI	CACGTG	1 cut(s)	677
PpsI	GAGTC	4 cut(s)	197, 304, 711, 1038
Ppu21I	YACGTR	1 cut(s)	677
PsiI	TTATAA	1 cut(s)	585
PspCI	CACGTG	1 cut(s)	677
PspFI	CCCAGC	2 cut(s)	60, 816
PstI	CTGCAG	1 cut(s)	613
PsuI	RGATCY	2 cut(s)	799, 1159
PsyI	GACNNNGTC	1 cut(s)	1117
RsaI	GTAC	1 cut(s)	1109
RsaNI	GTAC	1 cut(s)	1108
RseI	CAYNNNNRTG	1 cut(s)	1231
SaqAI	TTAA	3 cut(s)	521, 566, 981
SatI	GCNGC	2 cut(s)	842, 972
Sau3AI	GATC	6 cut(s)	379, 799, 901, 1159, 1179, 1223
SchI	GAGTC	4 cut(s)	197, 304, 712, 1039
SfaNI	GCATC	4 cut(s)	303, 356, 951, 1140
SfcI	CTRYAG	1 cut(s)	609
SmiMI	CAYNNNNRTG	1 cut(s)	1231
SmlI	CTYRAG	1 cut(s)	520
SmoI	CTYRAG	1 cut(s)	520
SphI	GCATGC	1 cut(s)	518
SsiI	CCGC	2 cut(s)	269, 842
SspI	AATATT	1 cut(s)	1061
SspMI	CTAG	2 cut(s)	1076, 1154
TaaI	ACNGT	1 cut(s)	581
TaiI	ACGT	1 cut(s)	679
TaqII	GACCGA	1 cut(s)	510
TauI	GCSGC	1 cut(s)	844
TfiI	GAWTC	2 cut(s)	638, 1046
Tru1I	TTAA	3 cut(s)	521, 566, 981
Tru9I	TTAA	3 cut(s)	521, 566, 981
TscAI	CASTG	3 cut(s)	613, 954, 1191
TseI	GCWGC	1 cut(s)	971
TspDTI	ATGAA	3 cut(s)	17, 116, 1220
TspGWI	ACGGA	1 cut(s)	221
TspRI	CASTG	3 cut(s)	613, 954, 1191
Tth111I	GACNNNGTC	1 cut(s)	1117
Vha464I	CTTAAG	1 cut(s)	520
XapI	RAATTY	3 cut(s)	414, 485, 498
XceI	RCATGY	2 cut(s)	518, 535
XcmI	CCANNNNNNNNNTGG	2 cut(s)	164, 954
XspI	CTAG	2 cut(s)	1076, 1154

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.