Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000124.1

Orthogroup ID

OG0020719

Physical Location & Seq

Genomic Coordinates Reverse (-)

162055 .. 162465

Gene Structure 411 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000124.1_g000040.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 216 bp

atgacgaagtctcggcttaaagtacaagtgaaggaacacattgagctcaatgaaagcgagaacctgcagcttcgtgttgccggtgaatgggtctgcgatgagcttctgggaaaagaatatggggacattgatgttgcagtagaaaacatgaggagaatcgaatatgctgagaagcaaactgaaacgtgtggtaccggcaaggatgagcatgtttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001680 GO:0003674 GO:0003824 GO:0004652 GO:0004810 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005759 GO:0006139 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0031123 GO:0031974 GO:0034470 GO:0034641 GO:0034660 GO:0042780 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043628 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0052928 GO:0052929 GO:0070013 GO:0070566 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1990817

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

PolyA_pol PolyA_pol_RNAbd

Protein Analysis

71

Amino Acids

8.19

Weight (kDa)

4.83

Isoelectric Point (pI)

46.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020719)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000124.1_g000040
rosa_rugosa	Rorug02G0521400.1
rosa_samantha	Rh2DG609000 Rh4BG167400 Rh4BG393300 Rh4CG408100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	72
Acc65I	GGTACC	1 cut(s)	191
AccB1I	GGYRCC	1 cut(s)	191
AfaI	GTAC	2 cut(s)	24, 193
AfiI	CCNNNNNNNGG	1 cut(s)	87
AflIII	ACRYGT	1 cut(s)	185
AluBI	AGCT	3 cut(s)	46, 70, 103
AluI	AGCT	3 cut(s)	46, 70, 103
Alw21I	GWGCWC	1 cut(s)	48
Alw26I	GTCTC	1 cut(s)	15
ApeKI	GCWGC	1 cut(s)	67
Asp718I	GGTACC	1 cut(s)	191
AsuHPI	GGTGA	1 cut(s)	95
BanI	GGYRCC	1 cut(s)	191
BanII	GRGCYC	1 cut(s)	48
Bbv12I	GWGCWC	1 cut(s)	48
BbvI	GCAGC	1 cut(s)	79
BcoDI	GTCTC	1 cut(s)	15
BfmI	CTRYAG	1 cut(s)	65
BfuAI	ACCTGC	1 cut(s)	72
BisI	GCNGC	1 cut(s)	68
BlsI	GCNGC	1 cut(s)	69
BmiI	GGNNCC	1 cut(s)	193
Bsc4I	CCNNNNNNNGG	1 cut(s)	87
Bse118I	RCCGGY	2 cut(s)	80, 194
BseGI	GGATG	1 cut(s)	208
BseLI	CCNNNNNNNGG	1 cut(s)	87
BseMII	CTCAG	1 cut(s)	159
BseRI	GAGGAG	1 cut(s)	166
BseXI	GCAGC	1 cut(s)	79
BshNI	GGYRCC	1 cut(s)	191
BsiHKAI	GWGCWC	1 cut(s)	48
BsiSI	CCGG	2 cut(s)	81, 195
BslFI	GGGAC	1 cut(s)	137
BslI	CCNNNNNNNGG	1 cut(s)	87
BsmAI	GTCTC	1 cut(s)	15
BsmFI	GGGAC	1 cut(s)	137
Bsp1286I	GDGCHC	1 cut(s)	48
BspCNI	CTCAG	1 cut(s)	160
BspLI	GGNNCC	1 cut(s)	193
BspMAI	CTGCAG	1 cut(s)	69
BspMI	ACCTGC	1 cut(s)	72
BspT107I	GGYRCC	1 cut(s)	191
BsrFI	RCCGGY	2 cut(s)	80, 194
BssAI	RCCGGY	2 cut(s)	80, 194
BstDEI	CTNAG	1 cut(s)	168
BstF5I	GGATG	1 cut(s)	208
BstMAI	GTCTC	1 cut(s)	15
BstNSI	RCATGY	1 cut(s)	212
BstSFI	CTRYAG	1 cut(s)	65
BstV1I	GCAGC	1 cut(s)	79
BtgZI	GCGATG	1 cut(s)	111
BtsCI	GGATG	1 cut(s)	208
BveI	ACCTGC	1 cut(s)	72
Cfr10I	RCCGGY	2 cut(s)	80, 194
Csp6I	GTAC	2 cut(s)	23, 192
CviAII	CATG	2 cut(s)	148, 209
CviJI	RGCY	4 cut(s)	16, 46, 70, 103
CviKI_1	RGCY	4 cut(s)	16, 46, 70, 103
CviQI	GTAC	2 cut(s)	23, 192
DdeI	CTNAG	1 cut(s)	168
Ecl136II	GAGCTC	1 cut(s)	46
Eco24I	GRGCYC	1 cut(s)	48
Eco53kI	GAGCTC	1 cut(s)	46
EcoICRI	GAGCTC	1 cut(s)	46
EcoT38I	GRGCYC	1 cut(s)	48
FaeI	CATG	2 cut(s)	151, 212
FaiI	YATR	4 cut(s)	120, 149, 165, 210
FaqI	GGGAC	1 cut(s)	137
FatI	CATG	2 cut(s)	147, 208
Fnu4HI	GCNGC	1 cut(s)	68
FriOI	GRGCYC	1 cut(s)	48
Fsp4HI	GCNGC	1 cut(s)	68
GluI	GCNGC	1 cut(s)	68
HapII	CCGG	2 cut(s)	81, 195
Hin1II	CATG	2 cut(s)	151, 212
HinfI	GANTC	1 cut(s)	156
HpaII	CCGG	2 cut(s)	81, 195
HphI	GGTGA	1 cut(s)	95
HpyAV	CCTTC	1 cut(s)	25
HpyCH4IV	ACGT	1 cut(s)	185
HpyCH4V	TGCA	2 cut(s)	67, 137
HpyF3I	CTNAG	1 cut(s)	168
HpySE526I	ACGT	1 cut(s)	185
Hsp92II	CATG	2 cut(s)	151, 212
KpnI	GGTACC	1 cut(s)	195
LpnPI	CCDG	4 cut(s)	77, 92, 94, 208
Lsp1109I	GCAGC	1 cut(s)	79
MaeII	ACGT	1 cut(s)	185
MhlI	GDGCHC	1 cut(s)	48
MnlI	CCTC	1 cut(s)	144
MseI	TTAA	2 cut(s)	18, 214
MspI	CCGG	2 cut(s)	81, 195
NlaIII	CATG	2 cut(s)	151, 212
NlaIV	GGNNCC	1 cut(s)	193
NspI	RCATGY	1 cut(s)	212
PfeI	GAWTC	1 cut(s)	156
PflFI	GACNNNGTC	1 cut(s)	7
PkrI	GCNGC	1 cut(s)	69
Psp124BI	GAGCTC	1 cut(s)	48
PspN4I	GGNNCC	1 cut(s)	193
PstI	CTGCAG	1 cut(s)	69
PsyI	GACNNNGTC	1 cut(s)	7
RsaI	GTAC	2 cut(s)	24, 193
RsaNI	GTAC	2 cut(s)	23, 192
SacI	GAGCTC	1 cut(s)	48
SaqAI	TTAA	2 cut(s)	18, 214
SatI	GCNGC	1 cut(s)	68
SduI	GDGCHC	1 cut(s)	48
SetI	ASST	5 cut(s)	48, 66, 72, 105, 188
SfcI	CTRYAG	1 cut(s)	65
SstI	GAGCTC	1 cut(s)	48
TaiI	ACGT	1 cut(s)	188
TaqI	TCGA	1 cut(s)	159
TatI	WGTACW	1 cut(s)	22
TfiI	GAWTC	1 cut(s)	156
Tru1I	TTAA	2 cut(s)	18, 214
Tru9I	TTAA	2 cut(s)	18, 214
TseI	GCWGC	1 cut(s)	67
TspDTI	ATGAA	1 cut(s)	66
Tth111I	GACNNNGTC	1 cut(s)	7
XceI	RCATGY	1 cut(s)	212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.