Rh4BG167400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0020719
Physical Location & Seq
Forward (+)
30080139 .. 30082637
2499 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG167400.1

Sequence Viewer

Length: 273 bp
ATGAGGGGAATTGAATTTTCCGAGAAGGTGAAAGACTACTTGTACTCCGTTGGGGAGGAGCAAGCAATCATATTCTTTCCAGGTCAGACGATGGCGACGTCATCCGTGATGATCAACGGAGAGTTGAGAGTCGTGGTTCCCAGACGTGGAGTCTTCGGAGATGGCTGGGGCGAACACGGCCAAGGTGAGGCTCACCGATGCTATGGCGCCGGGATTTTCCGGTGTCTCAGTGACGGGCTTGGTGCGGAAAGGGAAACGGAAAGGGGAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

90

Amino Acids

9.96

Weight (kDa)

5.65

Isoelectric Point (pI)

24.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020719)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0000124.1_g000040
rosa_rugosa Rorug02G0521400.1
rosa_samantha Rh2DG609000 Rh4BG167400 Rh4BG393300 Rh4CG408100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 101
AccB1I GGYRCC 1 cut(s) 206
AciI CCGC 1 cut(s) 245
AcoI YGGCCR 1 cut(s) 178
AcsI RAATTY 1 cut(s) 14
AcyI GRCGYC 2 cut(s) 98, 207
AfaI GTAC 1 cut(s) 44
AfiI CCNNNNNNNGG 2 cut(s) 146, 187
AgsI TTSAA 1 cut(s) 14
AhdI GACNNNNNGTC 1 cut(s) 149
AjiI CACGTC 1 cut(s) 146
AjnI CCWGG 1 cut(s) 79
Alw26I GTCTC 1 cut(s) 230
AoxI GGCC 1 cut(s) 178
ApoI RAATTY 1 cut(s) 14
AspLEI GCGC 1 cut(s) 209
AsuC2I CCSGG 1 cut(s) 211
AsuHPI GGTGA 3 cut(s) 40, 185, 197
BanI GGYRCC 1 cut(s) 206
BbsI GAAGAC 1 cut(s) 145
BccI CCATC 2 cut(s) 85, 155
BceAI ACGGC 1 cut(s) 193
BciT130I CCWGG 1 cut(s) 81
BclI TGATCA 1 cut(s) 111
BcnI CCSGG 1 cut(s) 211
BcoDI GTCTC 1 cut(s) 230
BfoI RGCGCY 1 cut(s) 210
Bme1390I CCNGG 2 cut(s) 81, 211
BmeRI GACNNNNNGTC 1 cut(s) 149
BmgBI CACGTC 1 cut(s) 146
BmiI GGNNCC 2 cut(s) 138, 208
BmrFI CCNGG 2 cut(s) 81, 211
BmsI GCATC 1 cut(s) 188
BpiI GAAGAC 1 cut(s) 145
BpuMI CCSGG 1 cut(s) 211
BsaHI GRCGYC 2 cut(s) 98, 207
BsaJI CCNNGG 1 cut(s) 181
BsaWI WCCGGW 1 cut(s) 219
BsaXI ACNNNNNCTCC 2 cut(s) 29, 59
Bsc4I CCNNNNNNNGG 2 cut(s) 146, 187
BseBI CCWGG 1 cut(s) 81
BseDI CCNNGG 1 cut(s) 181
BseGI GGATG 1 cut(s) 101
BseLI CCNNNNNNNGG 2 cut(s) 146, 187
BseMII CTCAG 1 cut(s) 241
BseRI GAGGAG 1 cut(s) 71
BseYI CCCAGC 1 cut(s) 165
BshFI GGCC 1 cut(s) 180
BshNI GGYRCC 1 cut(s) 206
BsiSI CCGG 2 cut(s) 210, 220
BslI CCNNNNNNNGG 2 cut(s) 146, 187
BsmAI GTCTC 1 cut(s) 230
BsnI GGCC 1 cut(s) 180
Bsp143I GATC 1 cut(s) 111
BspACI CCGC 1 cut(s) 245
BspANI GGCC 1 cut(s) 180
BspCNI CTCAG 1 cut(s) 240
BspLI GGNNCC 2 cut(s) 138, 208
BspT107I GGYRCC 1 cut(s) 206
BssECI CCNNGG 1 cut(s) 181
BssMI GATC 1 cut(s) 111
BssNI GRCGYC 2 cut(s) 98, 207
BssT1I CCWWGG 1 cut(s) 181
Bst2UI CCWGG 1 cut(s) 81
BstACI GRCGYC 2 cut(s) 98, 207
BstC8I GCNNGC 1 cut(s) 63
BstDEI CTNAG 1 cut(s) 227
BstF5I GGATG 1 cut(s) 101
BstH2I RGCGCY 1 cut(s) 210
BstHHI GCGC 1 cut(s) 209
BstKTI GATC 1 cut(s) 114
BstMAI GTCTC 1 cut(s) 230
BstMBI GATC 1 cut(s) 111
BstMWI GCNNNNNNNGC 1 cut(s) 177
BstNI CCWGG 1 cut(s) 81
BstSCI CCNGG 2 cut(s) 79, 209
BstV2I GAAGAC 1 cut(s) 145
BsuRI GGCC 1 cut(s) 180
BtrI CACGTC 1 cut(s) 146
BtsCI GGATG 1 cut(s) 101
BtsIMutI CAGTG 1 cut(s) 235
Cac8I GCNNGC 1 cut(s) 63
CfoI GCGC 1 cut(s) 209
Csp6I GTAC 1 cut(s) 43
CviJI RGCY 4 cut(s) 165, 180, 191, 238
CviKI_1 RGCY 4 cut(s) 165, 180, 191, 238
CviQI GTAC 1 cut(s) 43
DdeI CTNAG 1 cut(s) 227
DinI GGCGCC 1 cut(s) 208
DpnI GATC 1 cut(s) 113
DpnII GATC 1 cut(s) 111
DriI GACNNNNNGTC 1 cut(s) 149
EaeI YGGCCR 1 cut(s) 178
Eam1105I GACNNNNNGTC 1 cut(s) 149
Eco130I CCWWGG 1 cut(s) 181
EcoRII CCWGG 1 cut(s) 79
EcoT14I CCWWGG 1 cut(s) 181
EgeI GGCGCC 1 cut(s) 208
EheI GGCGCC 1 cut(s) 208
ErhI CCWWGG 1 cut(s) 181
FaiI YATR 2 cut(s) 71, 204
FbaI TGATCA 1 cut(s) 111
FokI GGATG 1 cut(s) 88
GlaI GCGC 1 cut(s) 208
GsaI CCCAGC 1 cut(s) 169
HaeII RGCGCY 1 cut(s) 210
HaeIII GGCC 1 cut(s) 180
HapII CCGG 2 cut(s) 210, 220
HhaI GCGC 1 cut(s) 209
Hin1I GRCGYC 2 cut(s) 98, 207
Hin6I GCGC 1 cut(s) 207
HinP1I GCGC 1 cut(s) 207
HinfI GANTC 2 cut(s) 129, 150
HpaII CCGG 2 cut(s) 210, 220
HphI GGTGA 3 cut(s) 40, 185, 197
Hpy188I TCNGA 3 cut(s) 22, 87, 158
Hpy99I CGWCG 1 cut(s) 100
HpyAV CCTTC 2 cut(s) 19, 261
HpyCH4IV ACGT 2 cut(s) 98, 145
HpyF10VI GCNNNNNNNGC 1 cut(s) 177
HpyF3I CTNAG 1 cut(s) 227
HpySE526I ACGT 2 cut(s) 98, 145
Hsp92I GRCGYC 2 cut(s) 98, 207
HspAI GCGC 1 cut(s) 207
KasI GGCGCC 1 cut(s) 206
Ksp22I TGATCA 1 cut(s) 111
Kzo9I GATC 1 cut(s) 111
LmnI GCTCC 1 cut(s) 58
LpnPI CCDG 6 cut(s) 66, 93, 151, 154, 223, 233
LweI GCATC 1 cut(s) 188
MaeII ACGT 2 cut(s) 98, 145
MaeIII GTNAC 1 cut(s) 230
MalI GATC 1 cut(s) 113
MboI GATC 1 cut(s) 111
MboII GAAGA 1 cut(s) 145
MluCI AATT 2 cut(s) 9, 14
Mly113I GGCGCC 1 cut(s) 207
MlyI GAGTC 2 cut(s) 138, 159
MnlI CCTC 2 cut(s) 49, 181
MspI CCGG 2 cut(s) 210, 220
MspR9I CCNGG 2 cut(s) 81, 211
MvaI CCWGG 1 cut(s) 81
MwoI GCNNNNNNNGC 1 cut(s) 177
NarI GGCGCC 1 cut(s) 207
NciI CCSGG 1 cut(s) 211
NdeII GATC 1 cut(s) 111
NlaIV GGNNCC 2 cut(s) 138, 208
NmuCI GTSAC 1 cut(s) 230
PcsI WCGNNNNNNNCGW 1 cut(s) 95
PleI GAGTC 2 cut(s) 137, 158
PluTI GGCGCC 1 cut(s) 210
PpsI GAGTC 2 cut(s) 137, 158
Psp6I CCWGG 1 cut(s) 79
PspFI CCCAGC 1 cut(s) 165
PspGI CCWGG 1 cut(s) 79
PspN4I GGNNCC 2 cut(s) 138, 208
RsaI GTAC 1 cut(s) 44
RsaNI GTAC 1 cut(s) 43
Sau3AI GATC 1 cut(s) 111
SchI GAGTC 2 cut(s) 138, 159
ScrFI CCNGG 2 cut(s) 81, 211
SetI ASST 6 cut(s) 30, 85, 101, 148, 187, 272
SfaNI GCATC 1 cut(s) 188
SfoI GGCGCC 1 cut(s) 208
Sse9I AATT 2 cut(s) 9, 14
SsiI CCGC 1 cut(s) 245
SspDI GGCGCC 1 cut(s) 206
StyD4I CCNGG 2 cut(s) 79, 209
StyI CCWWGG 1 cut(s) 181
TaiI ACGT 2 cut(s) 101, 148
TasI AATT 2 cut(s) 9, 14
TatI WGTACW 1 cut(s) 42
TscAI CASTG 1 cut(s) 235
TseFI GTSAC 1 cut(s) 230
Tsp45I GTSAC 1 cut(s) 230
TspGWI ACGGA 4 cut(s) 37, 94, 132, 272
TspRI CASTG 1 cut(s) 235
XapI RAATTY 1 cut(s) 14
ZraI GACGTC 1 cut(s) 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.