Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0020719

Physical Location & Seq

Genomic Coordinates Reverse (-)

65420739 .. 65421921

Gene Structure 1183 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG408100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGAAACCGAGACAAGATGTTCGATATCCTTCTCAAACGCTATGCCATAATGGCCTTGAGAACCTGCAGCTTCGTGTTGCCAATGGATGGGTCCGCGATAAGCTTCTGGGAAAAGAATATGGGGACATTGATATTGCAGTGGAAAACATGAGGAGAATCGAATATGCTGAGAAGCAAAGATATGCCACAGAAGAAGAGAAAGATGCATATAGAAGAGGTATAACCATTAACAGCTTGTTGTACAATATCAATACAAAATCAGTTGAAGATCATACTGGAAGAGGAATTGCAGATCTAAAAGAAGGAAGAATAGCAACTCCTACACCACCGGAGCTTTCACTTGTGGAGGCTCCTAAACGAGTTCTTCGAGCTATATGTTATGGAGCAACTTCTAAACCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001680 GO:0003674 GO:0003824 GO:0004652 GO:0004810 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005759 GO:0006139 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0031123 GO:0031974 GO:0034470 GO:0034641 GO:0034660 GO:0042780 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043628 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0052928 GO:0052929 GO:0070013 GO:0070566 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1990817

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

PolyA_pol PolyA_pol_RNAbd

Protein Analysis

133

Amino Acids

15.16

Weight (kDa)

8.88

Isoelectric Point (pI)

45.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PolyA_pol	PF01743	55 - 104	2.6e-10	Poly A polymerase head domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020719)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000124.1_g000040
rosa_rugosa	Rorug02G0521400.1
rosa_samantha	Rh2DG609000 Rh4BG167400 Rh4BG393300 Rh4CG408100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	72
AccB7I	CCANNNNNTGG	1 cut(s)	87
AccII	CGCG	1 cut(s)	96
AciI	CCGC	1 cut(s)	94
AfaI	GTAC	1 cut(s)	242
AfiI	CCNNNNNNNGG	1 cut(s)	87
AgsI	TTSAA	1 cut(s)	266
AluBI	AGCT	5 cut(s)	70, 103, 234, 334, 371
AluI	AGCT	5 cut(s)	70, 103, 234, 334, 371
Alw26I	GTCTC	1 cut(s)	4
AoxI	GGCC	1 cut(s)	52
ApeKI	GCWGC	1 cut(s)	67
ArsI	GACNNNNNNTTYG	1 cut(s)	35
AspS9I	GGNCC	1 cut(s)	91
AvaII	GGWCC	1 cut(s)	91
BbvI	GCAGC	1 cut(s)	79
BccI	CCATC	1 cut(s)	81
BcoDI	GTCTC	1 cut(s)	4
BfmI	CTRYAG	1 cut(s)	65
BfuAI	ACCTGC	1 cut(s)	72
BglI	GCCNNNNNGGC	1 cut(s)	51
BglII	AGATCT	1 cut(s)	292
BisI	GCNGC	1 cut(s)	68
BlsI	GCNGC	1 cut(s)	69
Bme18I	GGWCC	1 cut(s)	91
BmgT120I	GGNCC	1 cut(s)	91
BmiI	GGNNCC	2 cut(s)	92, 351
BmsI	GCATC	1 cut(s)	193
BpuEI	CTTGAG	1 cut(s)	77
BsaWI	WCCGGW	1 cut(s)	328
Bsc4I	CCNNNNNNNGG	1 cut(s)	87
Bse1I	ACTGG	1 cut(s)	280
BseGI	GGATG	1 cut(s)	92
BseLI	CCNNNNNNNGG	1 cut(s)	87
BseMII	CTCAG	1 cut(s)	159
BseNI	ACTGG	1 cut(s)	280
BseRI	GAGGAG	1 cut(s)	166
BseXI	GCAGC	1 cut(s)	79
Bsh1236I	CGCG	1 cut(s)	96
BshFI	GGCC	1 cut(s)	54
BsiSI	CCGG	1 cut(s)	329
BslFI	GGGAC	1 cut(s)	137
BslI	CCNNNNNNNGG	1 cut(s)	87
BsmAI	GTCTC	1 cut(s)	4
BsmFI	GGGAC	1 cut(s)	137
BsnI	GGCC	1 cut(s)	54
Bsp1407I	TGTACA	1 cut(s)	240
Bsp143I	GATC	2 cut(s)	268, 292
BspACI	CCGC	1 cut(s)	94
BspANI	GGCC	1 cut(s)	54
BspCNI	CTCAG	1 cut(s)	160
BspFNI	CGCG	1 cut(s)	96
BspLI	GGNNCC	2 cut(s)	92, 351
BspMAI	CTGCAG	1 cut(s)	69
BspMI	ACCTGC	1 cut(s)	72
BsrGI	TGTACA	1 cut(s)	240
BsrI	ACTGG	1 cut(s)	280
BssMI	GATC	2 cut(s)	268, 292
Bst6I	CTCTTC	3 cut(s)	189, 208, 274
BstAUI	TGTACA	1 cut(s)	240
BstDEI	CTNAG	1 cut(s)	168
BstF5I	GGATG	1 cut(s)	92
BstFNI	CGCG	1 cut(s)	96
BstKTI	GATC	2 cut(s)	271, 295
BstMAI	GTCTC	1 cut(s)	4
BstMBI	GATC	2 cut(s)	268, 292
BstMWI	GCNNNNNNNGC	1 cut(s)	51
BstSFI	CTRYAG	1 cut(s)	65
BstUI	CGCG	1 cut(s)	96
BstV1I	GCAGC	1 cut(s)	79
BstX2I	RGATCY	1 cut(s)	292
BstYI	RGATCY	1 cut(s)	292
BsuRI	GGCC	1 cut(s)	54
BtsCI	GGATG	1 cut(s)	92
BtsI	GCAGTG	1 cut(s)	144
BtsIMutI	CAGTG	1 cut(s)	144
BveI	ACCTGC	1 cut(s)	72
Cfr13I	GGNCC	1 cut(s)	91
Csp6I	GTAC	1 cut(s)	241
CviAII	CATG	1 cut(s)	148
CviJI	RGCY	7 cut(s)	54, 70, 103, 234, 334, 350, 371
CviKI_1	RGCY	7 cut(s)	54, 70, 103, 234, 334, 350, 371
CviQI	GTAC	1 cut(s)	241
DdeI	CTNAG	1 cut(s)	168
DpnI	GATC	2 cut(s)	270, 294
DpnII	GATC	2 cut(s)	268, 292
Eam1104I	CTCTTC	3 cut(s)	189, 208, 274
EarI	CTCTTC	3 cut(s)	189, 208, 274
Eco32I	GATATC	1 cut(s)	26
Eco47I	GGWCC	1 cut(s)	91
EcoRV	GATATC	1 cut(s)	26
EcoT22I	ATGCAT	1 cut(s)	208
FaeI	CATG	1 cut(s)	151
FaqI	GGGAC	1 cut(s)	137
FatI	CATG	1 cut(s)	147
Fnu4HI	GCNGC	1 cut(s)	68
FokI	GGATG	1 cut(s)	99
Fsp4HI	GCNGC	1 cut(s)	68
GluI	GCNGC	1 cut(s)	68
HaeIII	GGCC	1 cut(s)	54
HapII	CCGG	1 cut(s)	329
Hin1II	CATG	1 cut(s)	151
HindIII	AAGCTT	1 cut(s)	101
HinfI	GANTC	1 cut(s)	156
HpaII	CCGG	1 cut(s)	329
HpyAV	CCTTC	2 cut(s)	39, 296
HpyCH4V	TGCA	4 cut(s)	67, 137, 206, 290
HpyF10VI	GCNNNNNNNGC	1 cut(s)	51
HpyF3I	CTNAG	1 cut(s)	168
Hsp92II	CATG	1 cut(s)	151
Kzo9I	GATC	2 cut(s)	268, 292
LmnI	GCTCC	3 cut(s)	331, 355, 383
LpnPI	CCDG	4 cut(s)	77, 92, 261, 342
Lsp1109I	GCAGC	1 cut(s)	79
LweI	GCATC	1 cut(s)	193
MalI	GATC	2 cut(s)	270, 294
MboI	GATC	2 cut(s)	268, 292
MboII	GAAGA	7 cut(s)	203, 206, 225, 278, 291, 318, 356
MflI	RGATCY	1 cut(s)	292
MluCI	AATT	1 cut(s)	285
MnlI	CCTC	4 cut(s)	144, 209, 275, 340
Mph1103I	ATGCAT	1 cut(s)	208
MseI	TTAA	2 cut(s)	228, 400
MspI	CCGG	1 cut(s)	329
MvnI	CGCG	1 cut(s)	96
MwoI	GCNNNNNNNGC	1 cut(s)	51
NdeII	GATC	2 cut(s)	268, 292
NlaIII	CATG	1 cut(s)	151
NlaIV	GGNNCC	2 cut(s)	92, 351
NsiI	ATGCAT	1 cut(s)	208
PcsI	WCGNNNNNNNCGW	1 cut(s)	364
PfeI	GAWTC	1 cut(s)	156
PflMI	CCANNNNNTGG	1 cut(s)	87
PkrI	GCNGC	1 cut(s)	69
PspN4I	GGNNCC	2 cut(s)	92, 351
PspPI	GGNCC	1 cut(s)	91
PstI	CTGCAG	1 cut(s)	69
PsuI	RGATCY	1 cut(s)	292
RsaI	GTAC	1 cut(s)	242
RsaNI	GTAC	1 cut(s)	241
SaqAI	TTAA	2 cut(s)	228, 400
SatI	GCNGC	1 cut(s)	68
Sau3AI	GATC	2 cut(s)	268, 292
Sau96I	GGNCC	1 cut(s)	91
SetI	ASST	8 cut(s)	66, 72, 105, 220, 236, 336, 373, 400
SfaNI	GCATC	1 cut(s)	193
SfcI	CTRYAG	1 cut(s)	65
SinI	GGWCC	1 cut(s)	91
SmlI	CTYRAG	1 cut(s)	56
SmoI	CTYRAG	1 cut(s)	56
Sse9I	AATT	1 cut(s)	285
SsiI	CCGC	1 cut(s)	94
TaqI	TCGA	3 cut(s)	22, 159, 367
TasI	AATT	1 cut(s)	285
TatI	WGTACW	1 cut(s)	240
TfiI	GAWTC	1 cut(s)	156
Tru1I	TTAA	2 cut(s)	228, 400
Tru9I	TTAA	2 cut(s)	228, 400
TscAI	CASTG	1 cut(s)	144
TseI	GCWGC	1 cut(s)	67
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	144
Van91I	CCANNNNNTGG	1 cut(s)	87
VpaK11BI	GGWCC	1 cut(s)	91
Zsp2I	ATGCAT	1 cut(s)	208

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.