Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0020719

Physical Location & Seq

Genomic Coordinates Reverse (-)

54519220 .. 54520402

Gene Structure 1183 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG393300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGAAACCGAGACAAGATGTTCGATATCCTTCTCAAACGCTATGCCATAATGGCCTTGAGAACCTGCAGCTTCGTGTTGCCAATGGATGGGTCCGCGATAAGCTTCTGGGAAAAGAATATGGGGACATTGATATTGCAGTGGAAAACATGAGGAGAATCGAATATGCTGAGAAGCAAAGATATGCCACAGAAGAAGAGAAAGATGCATATAGAAGAGGTATAACCATTAACAGCTTGTTGTACAATATCAATACAAAATCAGTTGAAGATCATACTGGAAGAGGAATTGCAGATCTAAAAGAAGGAAGAATAGCAACTCCTACACCACCGGAGCTTTCACTTGTGGAGGCTCCTAAACGAGTTCTTCGAGCTATATGTTATGGAGCAACTTCTAAACCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001680 GO:0003674 GO:0003824 GO:0004652 GO:0004810 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005759 GO:0006139 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0031123 GO:0031974 GO:0034470 GO:0034641 GO:0034660 GO:0042780 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043628 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0052928 GO:0052929 GO:0070013 GO:0070566 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1990817

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

PolyA_pol PolyA_pol_RNAbd

Protein Analysis

133

Amino Acids

15.16

Weight (kDa)

8.88

Isoelectric Point (pI)

45.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PolyA_pol	PF01743	55 - 104	2.6e-10	Poly A polymerase head domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0020719)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000124.1_g000040
rosa_rugosa	Rorug02G0521400.1
rosa_samantha	Rh2DG609000 Rh4BG167400 Rh4BG393300 Rh4CG408100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	72
AccB7I	CCANNNNNTGG	1 cut(s)	87
AccII	CGCG	1 cut(s)	96
AciI	CCGC	1 cut(s)	94
AfaI	GTAC	1 cut(s)	242
AfiI	CCNNNNNNNGG	1 cut(s)	87
AgsI	TTSAA	1 cut(s)	266
AluBI	AGCT	5 cut(s)	70, 103, 234, 334, 371
AluI	AGCT	5 cut(s)	70, 103, 234, 334, 371
Alw26I	GTCTC	1 cut(s)	4
AoxI	GGCC	1 cut(s)	52
ApeKI	GCWGC	1 cut(s)	67
ArsI	GACNNNNNNTTYG	1 cut(s)	35
AspS9I	GGNCC	1 cut(s)	91
AvaII	GGWCC	1 cut(s)	91
BbvI	GCAGC	1 cut(s)	79
BccI	CCATC	1 cut(s)	81
BcoDI	GTCTC	1 cut(s)	4
BfmI	CTRYAG	1 cut(s)	65
BfuAI	ACCTGC	1 cut(s)	72
BglI	GCCNNNNNGGC	1 cut(s)	51
BglII	AGATCT	1 cut(s)	292
BisI	GCNGC	1 cut(s)	68
BlsI	GCNGC	1 cut(s)	69
Bme18I	GGWCC	1 cut(s)	91
BmgT120I	GGNCC	1 cut(s)	91
BmiI	GGNNCC	2 cut(s)	92, 351
BmsI	GCATC	1 cut(s)	193
BpuEI	CTTGAG	1 cut(s)	77
BsaWI	WCCGGW	1 cut(s)	328
Bsc4I	CCNNNNNNNGG	1 cut(s)	87
Bse1I	ACTGG	1 cut(s)	280
BseGI	GGATG	1 cut(s)	92
BseLI	CCNNNNNNNGG	1 cut(s)	87
BseMII	CTCAG	1 cut(s)	159
BseNI	ACTGG	1 cut(s)	280
BseRI	GAGGAG	1 cut(s)	166
BseXI	GCAGC	1 cut(s)	79
Bsh1236I	CGCG	1 cut(s)	96
BshFI	GGCC	1 cut(s)	54
BsiSI	CCGG	1 cut(s)	329
BslFI	GGGAC	1 cut(s)	137
BslI	CCNNNNNNNGG	1 cut(s)	87
BsmAI	GTCTC	1 cut(s)	4
BsmFI	GGGAC	1 cut(s)	137
BsnI	GGCC	1 cut(s)	54
Bsp1407I	TGTACA	1 cut(s)	240
Bsp143I	GATC	2 cut(s)	268, 292
BspACI	CCGC	1 cut(s)	94
BspANI	GGCC	1 cut(s)	54
BspCNI	CTCAG	1 cut(s)	160
BspFNI	CGCG	1 cut(s)	96
BspLI	GGNNCC	2 cut(s)	92, 351
BspMAI	CTGCAG	1 cut(s)	69
BspMI	ACCTGC	1 cut(s)	72
BsrGI	TGTACA	1 cut(s)	240
BsrI	ACTGG	1 cut(s)	280
BssMI	GATC	2 cut(s)	268, 292
Bst6I	CTCTTC	3 cut(s)	189, 208, 274
BstAUI	TGTACA	1 cut(s)	240
BstDEI	CTNAG	1 cut(s)	168
BstF5I	GGATG	1 cut(s)	92
BstFNI	CGCG	1 cut(s)	96
BstKTI	GATC	2 cut(s)	271, 295
BstMAI	GTCTC	1 cut(s)	4
BstMBI	GATC	2 cut(s)	268, 292
BstMWI	GCNNNNNNNGC	1 cut(s)	51
BstSFI	CTRYAG	1 cut(s)	65
BstUI	CGCG	1 cut(s)	96
BstV1I	GCAGC	1 cut(s)	79
BstX2I	RGATCY	1 cut(s)	292
BstYI	RGATCY	1 cut(s)	292
BsuRI	GGCC	1 cut(s)	54
BtsCI	GGATG	1 cut(s)	92
BtsI	GCAGTG	1 cut(s)	144
BtsIMutI	CAGTG	1 cut(s)	144
BveI	ACCTGC	1 cut(s)	72
Cfr13I	GGNCC	1 cut(s)	91
Csp6I	GTAC	1 cut(s)	241
CviAII	CATG	1 cut(s)	148
CviJI	RGCY	7 cut(s)	54, 70, 103, 234, 334, 350, 371
CviKI_1	RGCY	7 cut(s)	54, 70, 103, 234, 334, 350, 371
CviQI	GTAC	1 cut(s)	241
DdeI	CTNAG	1 cut(s)	168
DpnI	GATC	2 cut(s)	270, 294
DpnII	GATC	2 cut(s)	268, 292
Eam1104I	CTCTTC	3 cut(s)	189, 208, 274
EarI	CTCTTC	3 cut(s)	189, 208, 274
Eco32I	GATATC	1 cut(s)	26
Eco47I	GGWCC	1 cut(s)	91
EcoRV	GATATC	1 cut(s)	26
EcoT22I	ATGCAT	1 cut(s)	208
FaeI	CATG	1 cut(s)	151
FaqI	GGGAC	1 cut(s)	137
FatI	CATG	1 cut(s)	147
Fnu4HI	GCNGC	1 cut(s)	68
FokI	GGATG	1 cut(s)	99
Fsp4HI	GCNGC	1 cut(s)	68
GluI	GCNGC	1 cut(s)	68
HaeIII	GGCC	1 cut(s)	54
HapII	CCGG	1 cut(s)	329
Hin1II	CATG	1 cut(s)	151
HindIII	AAGCTT	1 cut(s)	101
HinfI	GANTC	1 cut(s)	156
HpaII	CCGG	1 cut(s)	329
HpyAV	CCTTC	2 cut(s)	39, 296
HpyCH4V	TGCA	4 cut(s)	67, 137, 206, 290
HpyF10VI	GCNNNNNNNGC	1 cut(s)	51
HpyF3I	CTNAG	1 cut(s)	168
Hsp92II	CATG	1 cut(s)	151
Kzo9I	GATC	2 cut(s)	268, 292
LmnI	GCTCC	3 cut(s)	331, 355, 383
LpnPI	CCDG	4 cut(s)	77, 92, 261, 342
Lsp1109I	GCAGC	1 cut(s)	79
LweI	GCATC	1 cut(s)	193
MalI	GATC	2 cut(s)	270, 294
MboI	GATC	2 cut(s)	268, 292
MboII	GAAGA	7 cut(s)	203, 206, 225, 278, 291, 318, 356
MflI	RGATCY	1 cut(s)	292
MluCI	AATT	1 cut(s)	285
MnlI	CCTC	4 cut(s)	144, 209, 275, 340
Mph1103I	ATGCAT	1 cut(s)	208
MseI	TTAA	2 cut(s)	228, 400
MspI	CCGG	1 cut(s)	329
MvnI	CGCG	1 cut(s)	96
MwoI	GCNNNNNNNGC	1 cut(s)	51
NdeII	GATC	2 cut(s)	268, 292
NlaIII	CATG	1 cut(s)	151
NlaIV	GGNNCC	2 cut(s)	92, 351
NsiI	ATGCAT	1 cut(s)	208
PcsI	WCGNNNNNNNCGW	1 cut(s)	364
PfeI	GAWTC	1 cut(s)	156
PflMI	CCANNNNNTGG	1 cut(s)	87
PkrI	GCNGC	1 cut(s)	69
PspN4I	GGNNCC	2 cut(s)	92, 351
PspPI	GGNCC	1 cut(s)	91
PstI	CTGCAG	1 cut(s)	69
PsuI	RGATCY	1 cut(s)	292
RsaI	GTAC	1 cut(s)	242
RsaNI	GTAC	1 cut(s)	241
SaqAI	TTAA	2 cut(s)	228, 400
SatI	GCNGC	1 cut(s)	68
Sau3AI	GATC	2 cut(s)	268, 292
Sau96I	GGNCC	1 cut(s)	91
SetI	ASST	8 cut(s)	66, 72, 105, 220, 236, 336, 373, 400
SfaNI	GCATC	1 cut(s)	193
SfcI	CTRYAG	1 cut(s)	65
SinI	GGWCC	1 cut(s)	91
SmlI	CTYRAG	1 cut(s)	56
SmoI	CTYRAG	1 cut(s)	56
Sse9I	AATT	1 cut(s)	285
SsiI	CCGC	1 cut(s)	94
TaqI	TCGA	3 cut(s)	22, 159, 367
TasI	AATT	1 cut(s)	285
TatI	WGTACW	1 cut(s)	240
TfiI	GAWTC	1 cut(s)	156
Tru1I	TTAA	2 cut(s)	228, 400
Tru9I	TTAA	2 cut(s)	228, 400
TscAI	CASTG	1 cut(s)	144
TseI	GCWGC	1 cut(s)	67
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	144
Van91I	CCANNNNNTGG	1 cut(s)	87
VpaK11BI	GGWCC	1 cut(s)	91
Zsp2I	ATGCAT	1 cut(s)	208

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.