Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000147.1

Orthogroup ID

OG0020664

Physical Location & Seq

Genomic Coordinates Forward (+)

273087 .. 273356

Gene Structure 270 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

atgtacatttttcattgtggcccagaagaatatggttctcgagactcgggctatagtggtggactgatgaccaatgcctttgaatacgcactcaaggcgggtggtttagagcaagagatcgactaccttatactgagactggtcgcggcacctgcatatttgacaaatgttattgtcgctactgcatccaaattcagcattgtttcccttgatgaagatcaaattgctgctaattttgtccacaaggaagtaaaaggcttgtgttgttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04142 ko04210 map04142 map04210

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

89

Amino Acids

9.7

Weight (kDa)

4.74

Isoelectric Point (pI)

36.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020664)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000017608
rosa_multiflora	Rmu_sc0000147.1_g000061
rosa_roxburghii	Rroxscaffold_7G00213870
rosa_samantha	Rh2AG050500 Rh5AG329400 Rh6BG240900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	160
Acc36I	ACCTGC	1 cut(s)	160
AccB1I	GGYRCC	1 cut(s)	148
AccII	CGCG	1 cut(s)	146
AciI	CCGC	2 cut(s)	98, 146
AcsI	RAATTY	1 cut(s)	191
AfaI	GTAC	1 cut(s)	5
AgsI	TTSAA	1 cut(s)	83
Alw26I	GTCTC	2 cut(s)	36, 130
Ama87I	CYCGRG	2 cut(s)	39, 46
AoxI	GGCC	1 cut(s)	19
ApeKI	GCWGC	1 cut(s)	227
ApoI	RAATTY	1 cut(s)	191
AspS9I	GGNCC	1 cut(s)	20
AvaI	CYCGRG	2 cut(s)	39, 46
BanI	GGYRCC	1 cut(s)	148
BbvI	GCAGC	1 cut(s)	214
BcoDI	GTCTC	2 cut(s)	36, 130
BfmI	CTRYAG	1 cut(s)	52
BfuAI	ACCTGC	1 cut(s)	160
BisI	GCNGC	2 cut(s)	147, 228
BlsI	GCNGC	2 cut(s)	148, 229
BmeT110I	CYCGRG	2 cut(s)	39, 46
BmgT120I	GGNCC	1 cut(s)	20
BmiI	GGNNCC	1 cut(s)	150
BmsI	GCATC	1 cut(s)	194
BpuEI	CTTGAG	1 cut(s)	77
BsaBI	GATNNNNATC	1 cut(s)	216
Bse1I	ACTGG	1 cut(s)	144
Bse8I	GATNNNNATC	1 cut(s)	216
BseGI	GGATG	1 cut(s)	185
BseJI	GATNNNNATC	1 cut(s)	216
BseMII	CTCAG	1 cut(s)	125
BseNI	ACTGG	1 cut(s)	144
BseXI	GCAGC	1 cut(s)	214
Bsh1236I	CGCG	1 cut(s)	146
BshFI	GGCC	1 cut(s)	21
BshNI	GGYRCC	1 cut(s)	148
BsiHKCI	CYCGRG	2 cut(s)	39, 46
BsmAI	GTCTC	2 cut(s)	36, 130
BsnI	GGCC	1 cut(s)	21
BsoBI	CYCGRG	2 cut(s)	39, 46
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	2 cut(s)	117, 217
BspACI	CCGC	2 cut(s)	98, 146
BspANI	GGCC	1 cut(s)	21
BspCNI	CTCAG	1 cut(s)	126
BspFNI	CGCG	1 cut(s)	146
BspLI	GGNNCC	1 cut(s)	150
BspMI	ACCTGC	1 cut(s)	160
BspT107I	GGYRCC	1 cut(s)	148
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	1 cut(s)	144
BssMI	GATC	2 cut(s)	117, 217
BstAUI	TGTACA	1 cut(s)	3
BstDEI	CTNAG	1 cut(s)	134
BstF5I	GGATG	1 cut(s)	185
BstFNI	CGCG	1 cut(s)	146
BstKTI	GATC	2 cut(s)	120, 220
BstMAI	GTCTC	2 cut(s)	36, 130
BstMBI	GATC	2 cut(s)	117, 217
BstMWI	GCNNNNNNNGC	2 cut(s)	95, 152
BstSFI	CTRYAG	1 cut(s)	52
BstUI	CGCG	1 cut(s)	146
BstV1I	GCAGC	1 cut(s)	214
BsuRI	GGCC	1 cut(s)	21
BtsCI	GGATG	1 cut(s)	185
BveI	ACCTGC	1 cut(s)	160
Cfr13I	GGNCC	1 cut(s)	20
Csp6I	GTAC	1 cut(s)	4
CspCI	CAANNNNNGTGG	2 cut(s)	82, 117
CviJI	RGCY	3 cut(s)	21, 51, 258
CviKI_1	RGCY	3 cut(s)	21, 51, 258
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	1 cut(s)	134
DpnI	GATC	2 cut(s)	119, 219
DpnII	GATC	2 cut(s)	117, 217
Eco88I	CYCGRG	2 cut(s)	39, 46
FaiI	YATR	4 cut(s)	33, 54, 131, 157
FauI	CCCGC	1 cut(s)	91
Fnu4HI	GCNGC	2 cut(s)	147, 228
FokI	GGATG	1 cut(s)	172
Fsp4HI	GCNGC	2 cut(s)	147, 228
GluI	GCNGC	2 cut(s)	147, 228
HaeIII	GGCC	1 cut(s)	21
HinfI	GANTC	1 cut(s)	44
Hpy166II	GTNNAC	2 cut(s)	62, 241
Hpy188III	TCNNGA	2 cut(s)	39, 41
Hpy8I	GTNNAC	2 cut(s)	62, 241
HpyCH4V	TGCA	2 cut(s)	155, 185
HpyF10VI	GCNNNNNNNGC	2 cut(s)	95, 152
HpyF3I	CTNAG	1 cut(s)	134
Kzo9I	GATC	2 cut(s)	117, 217
LpnPI	CCDG	3 cut(s)	36, 125, 165
Lsp1109I	GCAGC	1 cut(s)	214
LweI	GCATC	1 cut(s)	194
MalI	GATC	2 cut(s)	119, 219
MboI	GATC	2 cut(s)	117, 217
MboII	GAAGA	2 cut(s)	38, 227
MluCI	AATT	3 cut(s)	191, 222, 232
MlyI	GAGTC	1 cut(s)	38
MseI	TTAA	1 cut(s)	268
MvnI	CGCG	1 cut(s)	146
MwoI	GCNNNNNNNGC	2 cut(s)	95, 152
NdeII	GATC	2 cut(s)	117, 217
NlaIV	GGNNCC	1 cut(s)	150
PaeR7I	CTCGAG	1 cut(s)	39
PaqCI	CACCTGC	1 cut(s)	160
PkrI	GCNGC	2 cut(s)	148, 229
PleI	GAGTC	1 cut(s)	38
PpsI	GAGTC	1 cut(s)	38
PspN4I	GGNNCC	1 cut(s)	150
PspPI	GGNCC	1 cut(s)	20
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
SaqAI	TTAA	1 cut(s)	268
SatI	GCNGC	2 cut(s)	147, 228
Sau3AI	GATC	2 cut(s)	117, 217
Sau96I	GGNCC	1 cut(s)	20
SchI	GAGTC	1 cut(s)	38
SetI	ASST	2 cut(s)	129, 154
SfaNI	GCATC	1 cut(s)	194
SfcI	CTRYAG	1 cut(s)	52
Sfr274I	CTCGAG	1 cut(s)	39
SlaI	CTCGAG	1 cut(s)	39
SmlI	CTYRAG	2 cut(s)	39, 92
SmoI	CTYRAG	2 cut(s)	39, 92
Sse9I	AATT	3 cut(s)	191, 222, 232
SsiI	CCGC	2 cut(s)	98, 146
TaqI	TCGA	2 cut(s)	40, 120
TasI	AATT	3 cut(s)	191, 222, 232
TatI	WGTACW	1 cut(s)	3
TauI	GCSGC	1 cut(s)	149
Tru1I	TTAA	1 cut(s)	268
Tru9I	TTAA	1 cut(s)	268
TseI	GCWGC	1 cut(s)	227
TspDTI	ATGAA	1 cut(s)	228
XapI	RAATTY	1 cut(s)	191
XhoI	CTCGAG	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.