Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000252.1

Orthogroup ID

OG0019497

Physical Location & Seq

Genomic Coordinates Reverse (-)

73589 .. 76366

Gene Structure 2778 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

atgatcgttaaggaaggagaatctacaagcaacctatatatagaggctaaagggatacaacgagacacagccaatcaaccaattattctctacgattacccaagtctccccggagcaacctctcttaccggtgaccacactccagtcccagtctcttcaagagccgactatcagttccaccaaaccaacccggtgatagtactttcagccccagtcttcccaggagccgactgccaataccactgccaccgagactatctcgaccagcgaagcaaggaagtcaggtcaagggactccccgacaactgcaccccacggtgctggcacgcctgcgcaatcacatcagcaaattaaagagacagtttgcatccatactggtttttggagccaaacagcttcatctccatttcgagaaggggccaacaaggaaggtgcagaacaaaatggaattactcaagaagaaggaaaagcccaagtactatttatcagtgagcagtcaaagaatgagtttgggactaaagaagcaccagtattgatcagcaagttaaagaatgaattgtctgatgacttgaacactgcaaacatattgacgggtgctcttcaagatgccttgagatttataaacacttctttgaaaccattcaagatgaatcccgagcaacaggaattatatttgtcactagaattgaaggctaaggctttggagagagctgaactttctgaagatgatgtgctggatacgattgtagacaggacattagcaaggaaaaagaaagaccatgcaaaaagtgatcagatcagagttgaaatggagaaaaaggttgcagtagaaaagaggatgatgatctatcttcatcccatcactccaaggccaagtgaggaagaaaagaagaagtcagaaagtgtagaaaacagtaagacaaaaaaagaagaaaagaagagttttctgaagtggctgattgatccaggagagtttgctacctggagtaggtctcaagctggagaccaaggcatcgcaagggaagtgaaagaaatttgctaccttcagttccggtgcgatgcccagtctctagtttcaccaatcacattctcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004812 GO:0004817 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006423 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0017076 GO:0019538 GO:0019752 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0034641 GO:0034645 GO:0034660 GO:0035639 GO:0036094 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043167 GO:0043168 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0071704 GO:0090304 GO:0097159 GO:0097367 GO:0140098 GO:0140101 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

DALR_2 tRNA-synt_1e

Protein Analysis

364

Amino Acids

40.87

Weight (kDa)

6.05

Isoelectric Point (pI)

45.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019497)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000031965
rosa_multiflora	Rmu_sc0000252.1_g000015
rosa_roxburghii	Rroxscaffold_1G00063700 Rroxscaffold_1G00063710 Rroxscaffold_4G00327280
rosa_rugosa	Rorug04G0399700 Rorug05G0005000
rosa_samantha	Rh5CG025000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	620
Acc16I	TGCGCA	1 cut(s)	333
AccI	GTMKAC	1 cut(s)	747
AclWI	GGATC	1 cut(s)	956
AcsI	RAATTY	1 cut(s)	1032
AcuI	CTGAAG	3 cut(s)	741, 968, 1028
AfaI	GTAC	2 cut(s)	201, 477
AfiI	CCNNNNNNNGG	1 cut(s)	987
AgeI	ACCGGT	1 cut(s)	128
AgsI	TTSAA	7 cut(s)	159, 571, 602, 634, 643, 688, 806
AjnI	CCWGG	3 cut(s)	220, 964, 980
AluBI	AGCT	3 cut(s)	395, 710, 998
AluI	AGCT	3 cut(s)	395, 710, 998
Alw21I	GWGCWC	1 cut(s)	598
Alw26I	GTCTC	8 cut(s)	57, 110, 157, 246, 350, 996, 996, 1071
AlwI	GGATC	1 cut(s)	956
Ama87I	CYCGRG	1 cut(s)	653
AoxI	GGCC	2 cut(s)	417, 869
ApoI	RAATTY	1 cut(s)	1032
AsiGI	ACCGGT	1 cut(s)	128
Asp700I	GAANNNNTTC	1 cut(s)	638
AspLEI	GCGC	1 cut(s)	334
AspS9I	GGNCC	1 cut(s)	417
AsuC2I	CCSGG	2 cut(s)	111, 191
AsuHPI	GGTGA	3 cut(s)	143, 205, 1068
AvaI	CYCGRG	1 cut(s)	653
BaeI	ACNNNNGTAYC	2 cut(s)	729, 762
BbsI	GAAGAC	1 cut(s)	208
Bbv12I	GWGCWC	1 cut(s)	598
BccI	CCATC	1 cut(s)	866
BciT130I	CCWGG	3 cut(s)	222, 966, 982
BciVI	GTATCC	2 cut(s)	48, 730
BclI	TGATCA	2 cut(s)	534, 790
BcnI	CCSGG	2 cut(s)	111, 191
BcoDI	GTCTC	8 cut(s)	57, 110, 157, 246, 350, 996, 996, 1071
BfaI	CTAG	2 cut(s)	680, 1070
BfuI	GTATCC	2 cut(s)	48, 730
BmcAI	AGTACT	2 cut(s)	201, 477
Bme1390I	CCNGG	5 cut(s)	111, 191, 222, 966, 982
BmeT110I	CYCGRG	1 cut(s)	653
BmgT120I	GGNCC	1 cut(s)	417
BmiI	GGNNCC	3 cut(s)	226, 386, 418
BmrFI	CCNGG	5 cut(s)	111, 191, 222, 966, 982
BmrI	ACTGGG	3 cut(s)	143, 206, 1057
BmsI	GCATC	4 cut(s)	375, 595, 1020, 1048
BmuI	ACTGGG	3 cut(s)	143, 206, 1057
BpiI	GAAGAC	1 cut(s)	208
BplI	GAGNNNNNCTC	4 cut(s)	243, 275, 976, 1008
BpmI	CTGGAG	3 cut(s)	126, 1003, 1020
Bpu10I	CCTNAGC	1 cut(s)	693
BpuEI	CTTGAG	3 cut(s)	438, 631, 978
BpuMI	CCSGG	2 cut(s)	111, 191
BsaBI	GATNNNNATC	1 cut(s)	842
BsaI	GGTCTC	2 cut(s)	996, 996
BsaJI	CCNNGG	5 cut(s)	109, 220, 313, 866, 1006
BsaWI	WCCGGW	2 cut(s)	128, 1050
Bsc4I	CCNNNNNNNGG	1 cut(s)	987
Bse118I	RCCGGY	1 cut(s)	128
Bse1I	ACTGG	6 cut(s)	143, 149, 212, 379, 527, 1063
Bse8I	GATNNNNATC	1 cut(s)	842
BseBI	CCWGG	3 cut(s)	222, 966, 982
BseDI	CCNNGG	5 cut(s)	109, 220, 313, 866, 1006
BseGI	GGATG	3 cut(s)	366, 843, 853
BseJI	GATNNNNATC	1 cut(s)	842
BseLI	CCNNNNNNNGG	1 cut(s)	987
BseNI	ACTGG	6 cut(s)	143, 149, 212, 379, 527, 1063
BsgI	GTGCAG	2 cut(s)	291, 453
BshFI	GGCC	2 cut(s)	419, 871
BshTI	ACCGGT	1 cut(s)	128
BsiHKAI	GWGCWC	1 cut(s)	598
BsiHKCI	CYCGRG	1 cut(s)	653
BsiSI	CCGG	4 cut(s)	111, 129, 191, 1051
BslFI	GGGAC	3 cut(s)	131, 305, 526
BslI	CCNNNNNNNGG	1 cut(s)	987
BsmAI	GTCTC	8 cut(s)	57, 110, 157, 246, 350, 996, 996, 1071
BsmFI	GGGAC	3 cut(s)	131, 305, 526
BsnI	GGCC	2 cut(s)	419, 871
Bso31I	GGTCTC	2 cut(s)	996, 996
BsoBI	CYCGRG	1 cut(s)	653
Bsp1286I	GDGCHC	1 cut(s)	598
Bsp143I	GATC	6 cut(s)	3, 534, 790, 795, 843, 961
BspANI	GGCC	2 cut(s)	419, 871
BspLI	GGNNCC	3 cut(s)	226, 386, 418
BspPI	GGATC	1 cut(s)	956
BspQI	GCTCTTC	1 cut(s)	603
BspTNI	GGTCTC	2 cut(s)	996, 996
BsrFI	RCCGGY	1 cut(s)	128
BsrI	ACTGG	6 cut(s)	143, 149, 212, 379, 527, 1063
BssAI	RCCGGY	1 cut(s)	128
BssECI	CCNNGG	5 cut(s)	109, 220, 313, 866, 1006
BssMI	GATC	6 cut(s)	3, 534, 790, 795, 843, 961
BssT1I	CCWWGG	2 cut(s)	866, 1006
Bst2UI	CCWGG	3 cut(s)	222, 966, 982
Bst4CI	ACNGT	3 cut(s)	317, 361, 914
Bst6I	CTCTTC	3 cut(s)	160, 603, 932
BstC8I	GCNNGC	3 cut(s)	322, 326, 330
BstDEI	CTNAG	1 cut(s)	693
BstDSI	CCRYGG	1 cut(s)	313
BstEII	GGTNACC	1 cut(s)	131
BstENI	CCTNNNNNAGG	1 cut(s)	985
BstF5I	GGATG	3 cut(s)	366, 843, 853
BstHHI	GCGC	1 cut(s)	334
BstKTI	GATC	6 cut(s)	6, 537, 793, 798, 846, 964
BstMAI	GTCTC	8 cut(s)	57, 110, 157, 246, 350, 996, 996, 1071
BstMBI	GATC	6 cut(s)	3, 534, 790, 795, 843, 961
BstNI	CCWGG	3 cut(s)	222, 966, 982
BstPI	GGTNACC	1 cut(s)	131
BstSCI	CCNGG	5 cut(s)	109, 189, 220, 964, 980
BstV2I	GAAGAC	1 cut(s)	208
BstXI	CCANNNNNNTGG	1 cut(s)	320
BsuI	GTATCC	2 cut(s)	48, 730
BsuRI	GGCC	2 cut(s)	419, 871
BtgI	CCRYGG	1 cut(s)	313
BtgZI	GCGATG	2 cut(s)	997, 1071
BtsCI	GGATG	3 cut(s)	366, 843, 853
BtsI	GCAGTG	2 cut(s)	241, 573
BtsIMutI	CAGTG	3 cut(s)	241, 493, 573
Cac8I	GCNNGC	3 cut(s)	322, 326, 330
CfoI	GCGC	1 cut(s)	334
Cfr10I	RCCGGY	1 cut(s)	128
Cfr13I	GGNCC	1 cut(s)	417
Csp6I	GTAC	2 cut(s)	200, 476
CspAI	ACCGGT	1 cut(s)	128
CviAII	CATG	1 cut(s)	779
CviQI	GTAC	2 cut(s)	200, 476
DdeI	CTNAG	1 cut(s)	693
DpnI	GATC	6 cut(s)	5, 536, 792, 797, 845, 963
DpnII	GATC	6 cut(s)	3, 534, 790, 795, 843, 961
Eam1104I	CTCTTC	3 cut(s)	160, 603, 932
EarI	CTCTTC	3 cut(s)	160, 603, 932
Eco130I	CCWWGG	2 cut(s)	866, 1006
Eco31I	GGTCTC	2 cut(s)	996, 996
Eco57I	CTGAAG	3 cut(s)	741, 968, 1028
Eco88I	CYCGRG	1 cut(s)	653
Eco91I	GGTNACC	1 cut(s)	131
EcoNI	CCTNNNNNAGG	1 cut(s)	985
EcoO65I	GGTNACC	1 cut(s)	131
EcoRII	CCWGG	3 cut(s)	220, 964, 980
EcoT14I	CCWWGG	2 cut(s)	866, 1006
ErhI	CCWWGG	2 cut(s)	866, 1006
FaeI	CATG	1 cut(s)	782
FaiI	YATR	9 cut(s)	37, 39, 41, 372, 584, 620, 670, 780, 1093
FaqI	GGGAC	3 cut(s)	131, 305, 526
FatI	CATG	1 cut(s)	778
FbaI	TGATCA	2 cut(s)	534, 790
FblI	GTMKAC	1 cut(s)	747
FokI	GGATG	3 cut(s)	353, 840, 850
FspBI	CTAG	2 cut(s)	680, 1070
FspI	TGCGCA	1 cut(s)	333
GlaI	GCGC	1 cut(s)	333
GsuI	CTGGAG	3 cut(s)	126, 1003, 1020
HaeIII	GGCC	2 cut(s)	419, 871
HapII	CCGG	4 cut(s)	111, 129, 191, 1051
HhaI	GCGC	1 cut(s)	334
Hin1II	CATG	1 cut(s)	782
Hin6I	GCGC	1 cut(s)	332
HinP1I	GCGC	1 cut(s)	332
HinfI	GANTC	3 cut(s)	20, 293, 649
HpaII	CCGG	4 cut(s)	111, 129, 191, 1051
HphI	GGTGA	3 cut(s)	143, 205, 1068
Hpy166II	GTNNAC	1 cut(s)	748
Hpy188I	TCNGA	6 cut(s)	562, 721, 795, 800, 898, 948
Hpy188III	TCNNGA	7 cut(s)	159, 260, 410, 455, 602, 643, 653
Hpy8I	GTNNAC	1 cut(s)	748
HpyAV	CCTTC	6 cut(s)	8, 407, 422, 455, 682, 1052
HpyCH4III	ACNGT	3 cut(s)	317, 361, 914
HpyCH4V	TGCA	6 cut(s)	308, 366, 434, 578, 782, 824
HpyF3I	CTNAG	1 cut(s)	693
Hsp92II	CATG	1 cut(s)	782
HspAI	GCGC	1 cut(s)	332
Ksp22I	TGATCA	2 cut(s)	534, 790
Kzo9I	GATC	6 cut(s)	3, 534, 790, 795, 843, 961
LguI	GCTCTTC	1 cut(s)	603
LmnI	GCTCC	3 cut(s)	113, 224, 384
LweI	GCATC	4 cut(s)	375, 595, 1020, 1048
MaeI	CTAG	2 cut(s)	680, 1070
MaeIII	GTNAC	2 cut(s)	131, 675
MalI	GATC	6 cut(s)	5, 536, 792, 797, 845, 963
MboI	GATC	6 cut(s)	3, 534, 790, 795, 843, 961
MhlI	GDGCHC	1 cut(s)	598
MluCI	AATT	7 cut(s)	81, 348, 447, 554, 665, 683, 1032
MlyI	GAGTC	1 cut(s)	287
MnlI	CCTC	4 cut(s)	37, 130, 828, 871
MroXI	GAANNNNTTC	1 cut(s)	638
MseI	TTAA	3 cut(s)	9, 351, 545
MspI	CCGG	4 cut(s)	111, 129, 191, 1051
MspR9I	CCNGG	5 cut(s)	111, 191, 222, 966, 982
MvaI	CCWGG	3 cut(s)	222, 966, 982
NciI	CCSGG	2 cut(s)	111, 191
NdeII	GATC	6 cut(s)	3, 534, 790, 795, 843, 961
NlaIII	CATG	1 cut(s)	782
NlaIV	GGNNCC	3 cut(s)	226, 386, 418
NmuCI	GTSAC	2 cut(s)	131, 675
NsbI	TGCGCA	1 cut(s)	333
PciSI	GCTCTTC	1 cut(s)	603
PdmI	GAANNNNTTC	1 cut(s)	638
PfeI	GAWTC	2 cut(s)	20, 649
PfoI	TCCNGGA	1 cut(s)	964
PinAI	ACCGGT	1 cut(s)	128
PleI	GAGTC	1 cut(s)	287
PpsI	GAGTC	1 cut(s)	287
PsiI	TTATAA	1 cut(s)	620
Psp6I	CCWGG	3 cut(s)	220, 964, 980
PspEI	GGTNACC	1 cut(s)	131
PspGI	CCWGG	3 cut(s)	220, 964, 980
PspN4I	GGNNCC	3 cut(s)	226, 386, 418
PspPI	GGNCC	1 cut(s)	417
RsaI	GTAC	2 cut(s)	201, 477
RsaNI	GTAC	2 cut(s)	200, 476
SapI	GCTCTTC	1 cut(s)	603
SaqAI	TTAA	3 cut(s)	9, 351, 545
Sau3AI	GATC	6 cut(s)	3, 534, 790, 795, 843, 961
Sau96I	GGNCC	1 cut(s)	417
ScaI	AGTACT	2 cut(s)	201, 477
SchI	GAGTC	1 cut(s)	287
ScrFI	CCNGG	5 cut(s)	111, 191, 222, 966, 982
SduI	GDGCHC	1 cut(s)	598
SfaNI	GCATC	4 cut(s)	375, 595, 1020, 1048
SmlI	CTYRAG	3 cut(s)	453, 610, 993
SmoI	CTYRAG	3 cut(s)	453, 610, 993
Sse9I	AATT	7 cut(s)	81, 348, 447, 554, 665, 683, 1032
SspMI	CTAG	2 cut(s)	680, 1070
StyD4I	CCNGG	5 cut(s)	109, 189, 220, 964, 980
StyI	CCWWGG	2 cut(s)	866, 1006
TaaI	ACNGT	3 cut(s)	317, 361, 914
TaqI	TCGA	2 cut(s)	261, 409
TasI	AATT	7 cut(s)	81, 348, 447, 554, 665, 683, 1032
TatI	WGTACW	2 cut(s)	199, 475
TfiI	GAWTC	2 cut(s)	20, 649
Tru1I	TTAA	3 cut(s)	9, 351, 545
Tru9I	TTAA	3 cut(s)	9, 351, 545
TscAI	CASTG	3 cut(s)	248, 493, 580
TseFI	GTSAC	2 cut(s)	131, 675
Tsp45I	GTSAC	2 cut(s)	131, 675
TspDTI	ATGAA	4 cut(s)	387, 567, 662, 842
TspRI	CASTG	3 cut(s)	248, 493, 580
XagI	CCTNNNNNAGG	1 cut(s)	985
XapI	RAATTY	1 cut(s)	1032
XmiI	GTMKAC	1 cut(s)	747
XmnI	GAANNNNTTC	1 cut(s)	638
XspI	CTAG	2 cut(s)	680, 1070
ZrmI	AGTACT	2 cut(s)	201, 477

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.