Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000255.1

Orthogroup ID

OG0004202

Physical Location & Seq

Genomic Coordinates Forward (+)

143974 .. 144543

Gene Structure 570 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000255.1_g000029.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

atgatgctccgtctctgccacagaacccgtcgctactgctatcacctcttccctcaccaccaccgtcacccccgccccctttcctcctccgcctccagaaaccccatcgaaccctccaacaatctcaaaaatgccaaccaagtccctccgccaccgccaattctccaccgccgctccagccctatcttccctatccccaccgcctccctctcccgcaacaccgtcctcggcctcaccgccgcgatcgcctcagtcgcaatcgcctcctacgccgtcgtcgccgtcaccgattccgacgacaagtcgttcaatcctctctacgacggagtccaaggcttggcgcgccaatccgccgagtcgtgccggaggattatccaccacgccaaacagaccggcgtcaccgcctccgtcctctggcactcgctccggtccgtgttgtcctccgccaaccacgaggtccgttccggcttccagcttagggttgcggcgcttctcgccgatatttccgcggccaatgccagccgcagggcccacgtgcttgccacgtcagcaaacaaacggagccgttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

189

Amino Acids

20.72

Weight (kDa)

11.44

Isoelectric Point (pI)

74.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004202)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34310 AT4G34310 AT4G34310 AT4G34310 AT4G34310 AT4G34310 AT4G34310 AT4G34310 AT4G34310 AT4G34310
fragaria_vesca	FvH4_2g34840 FvH4_2g34840 FvH4_2g34840 FvH4_2g34840 FvH4_2g34840 FvH4_2g34840
malus_domestica	MD08G1105600.v1.1 MD15G1086600.v1.1
prunus_persica	Prupe.1G440200_v2.0.a1
pyrus_communis	pycom08g08660 pycom15g08150
rosa_chinensis	RchiOBHm_Chr6g0307221
rosa_laevigata	RLG00000010726
rosa_multiflora	Rmu_sc0000255.1_g000029 Rmu_sc0000547.1_g000019 Rmu_sc0001436.1_g000013
rosa_roxburghii	Rroxscaffold_7G00161070
rosa_rugosa	Rorug06G0357800
rosa_samantha	Rh6AG468400 Rh6BG432100 Rh6CG483600 Rh6DG470200
rosa_wichuraiana	Rw6G040810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	337
AccBSI	CCGCTC	1 cut(s)	174
AccII	CGCG	3 cut(s)	242, 343, 509
AcoI	YGGCCR	1 cut(s)	510
AcvI	CACGTG	1 cut(s)	535
AcyI	GRCGYC	1 cut(s)	396
AfiI	CCNNNNNNNGG	4 cut(s)	337, 414, 478, 525
AgsI	TTSAA	1 cut(s)	310
AhdI	GACNNNNNGTC	1 cut(s)	301
AjiI	CACGTC	1 cut(s)	546
AluBI	AGCT	1 cut(s)	475
AluI	AGCT	1 cut(s)	475
Alw26I	GTCTC	1 cut(s)	17
AoxI	GGCC	3 cut(s)	229, 510, 528
ApaI	GGGCCC	1 cut(s)	532
AscI	GGCGCGCC	1 cut(s)	341
AsiSI	GCGATCGC	1 cut(s)	246
AspLEI	GCGC	3 cut(s)	343, 345, 490
AspS9I	GGNCC	4 cut(s)	429, 457, 528, 529
AsuHPI	GGTGA	6 cut(s)	35, 47, 59, 226, 277, 391
AvaII	GGWCC	2 cut(s)	429, 457
BaeGI	GKGCMC	1 cut(s)	532
BanII	GRGCYC	1 cut(s)	532
BauI	CACGAG	1 cut(s)	452
BbrPI	CACGTG	1 cut(s)	535
BccI	CCATC	1 cut(s)	113
BceAI	ACGGC	3 cut(s)	257, 266, 549
BcoDI	GTCTC	1 cut(s)	17
BfoI	RGCGCY	1 cut(s)	491
BisI	GCNGC	5 cut(s)	172, 240, 486, 510, 523
BlsI	GCNGC	5 cut(s)	173, 241, 487, 511, 524
Bme18I	GGWCC	2 cut(s)	429, 457
BmeRI	GACNNNNNGTC	1 cut(s)	301
BmgBI	CACGTC	1 cut(s)	546
BmgT120I	GGNCC	4 cut(s)	429, 457, 528, 529
BmiI	GGNNCC	2 cut(s)	530, 563
BoxI	GACNNNNGTC	1 cut(s)	395
BpmI	CTGGAG	2 cut(s)	79, 160
Bpu10I	CCTNAGC	1 cut(s)	476
BsaAI	YACGTR	1 cut(s)	535
BsaHI	GRCGYC	1 cut(s)	396
BsaJI	CCNNGG	3 cut(s)	226, 331, 507
BsaWI	WCCGGW	1 cut(s)	426
BsaXI	ACNNNNNCTCC	2 cut(s)	158, 188
Bsc4I	CCNNNNNNNGG	4 cut(s)	337, 414, 478, 525
Bse118I	RCCGGY	1 cut(s)	392
BseDI	CCNNGG	3 cut(s)	226, 331, 507
BseLI	CCNNNNNNNGG	4 cut(s)	337, 414, 478, 525
BseMII	CTCAG	1 cut(s)	264
BsePI	GCGCGC	1 cut(s)	341
BseRI	GAGGAG	1 cut(s)	76
BseSI	GKGCMC	1 cut(s)	532
Bsh1236I	CGCG	3 cut(s)	242, 343, 509
Bsh1285I	CGRYCG	1 cut(s)	246
BshFI	GGCC	3 cut(s)	231, 512, 530
BsiEI	CGRYCG	1 cut(s)	246
BsiSI	CCGG	4 cut(s)	364, 393, 427, 465
BslFI	GGGAC	1 cut(s)	128
BslI	CCNNNNNNNGG	4 cut(s)	337, 414, 478, 525
BsmAI	GTCTC	1 cut(s)	17
BsmBI	CGTCTC	1 cut(s)	17
BsmFI	GGGAC	1 cut(s)	128
BsnI	GGCC	3 cut(s)	231, 512, 530
Bsp120I	GGGCCC	1 cut(s)	528
Bsp1286I	GDGCHC	1 cut(s)	532
Bsp143I	GATC	1 cut(s)	243
BspANI	GGCC	3 cut(s)	231, 512, 530
BspCNI	CTCAG	1 cut(s)	263
BspFNI	CGCG	3 cut(s)	242, 343, 509
BspLI	GGNNCC	2 cut(s)	530, 563
BsrBI	CCGCTC	1 cut(s)	174
BsrFI	RCCGGY	1 cut(s)	392
BssAI	RCCGGY	1 cut(s)	392
BssECI	CCNNGG	3 cut(s)	226, 331, 507
BssHII	GCGCGC	1 cut(s)	341
BssMI	GATC	1 cut(s)	243
BssNI	GRCGYC	1 cut(s)	396
BssSI	CACGAG	1 cut(s)	452
BssT1I	CCWWGG	1 cut(s)	331
Bst2BI	CACGAG	1 cut(s)	452
Bst4CI	ACNGT	2 cut(s)	65, 223
Bst6I	CTCTTC	1 cut(s)	53
BstACI	GRCGYC	1 cut(s)	396
BstBAI	YACGTR	1 cut(s)	535
BstC8I	GCNNGC	3 cut(s)	343, 520, 540
BstDEI	CTNAG	2 cut(s)	250, 476
BstDSI	CCRYGG	1 cut(s)	507
BstFNI	CGCG	3 cut(s)	242, 343, 509
BstH2I	RGCGCY	1 cut(s)	491
BstHHI	GCGC	3 cut(s)	343, 345, 490
BstKTI	GATC	1 cut(s)	246
BstMAI	GTCTC	1 cut(s)	17
BstMBI	GATC	1 cut(s)	243
BstMCI	CGRYCG	1 cut(s)	246
BstMWI	GCNNNNNNNGC	9 cut(s)	177, 245, 254, 269, 278, 342, 494, 515, 548
BstPAI	GACNNNNGTC	1 cut(s)	395
BstSLI	GKGCMC	1 cut(s)	532
BstUI	CGCG	3 cut(s)	242, 343, 509
BsuRI	GGCC	3 cut(s)	231, 512, 530
BtgI	CCRYGG	1 cut(s)	507
BtrI	CACGTC	1 cut(s)	546
Cac8I	GCNNGC	3 cut(s)	343, 520, 540
CfoI	GCGC	3 cut(s)	343, 345, 490
Cfr10I	RCCGGY	1 cut(s)	392
Cfr13I	GGNCC	4 cut(s)	429, 457, 528, 529
Cfr42I	CCGCGG	1 cut(s)	510
CpoI	CGGWCCG	1 cut(s)	429
CseI	GACGC	1 cut(s)	385
CspI	CGGWCCG	1 cut(s)	429
CviJI	RGCY	9 cut(s)	180, 231, 336, 468, 475, 512, 522, 530, 564
CviKI_1	RGCY	9 cut(s)	180, 231, 336, 468, 475, 512, 522, 530, 564
DdeI	CTNAG	2 cut(s)	250, 476
DpnI	GATC	1 cut(s)	245
DpnII	GATC	1 cut(s)	243
DriI	GACNNNNNGTC	1 cut(s)	301
EaeI	YGGCCR	1 cut(s)	510
Eam1104I	CTCTTC	1 cut(s)	53
Eam1105I	GACNNNNNGTC	1 cut(s)	301
EarI	CTCTTC	1 cut(s)	53
EciI	GGCGGA	4 cut(s)	79, 138, 340, 433
Eco130I	CCWWGG	1 cut(s)	331
Eco24I	GRGCYC	1 cut(s)	532
Eco47I	GGWCC	2 cut(s)	429, 457
Eco72I	CACGTG	1 cut(s)	535
EcoO109I	RGGNCCY	1 cut(s)	528
EcoT14I	CCWWGG	1 cut(s)	331
EcoT38I	GRGCYC	1 cut(s)	532
ErhI	CCWWGG	1 cut(s)	331
Esp3I	CGTCTC	1 cut(s)	17
FaqI	GGGAC	1 cut(s)	128
FauI	CCCGC	2 cut(s)	80, 221
Fnu4HI	GCNGC	5 cut(s)	172, 240, 486, 510, 523
FriOI	GRGCYC	1 cut(s)	532
Fsp4HI	GCNGC	5 cut(s)	172, 240, 486, 510, 523
GlaI	GCGC	3 cut(s)	342, 344, 489
GluI	GCNGC	5 cut(s)	172, 240, 486, 510, 523
GsuI	CTGGAG	2 cut(s)	79, 160
HaeII	RGCGCY	1 cut(s)	491
HaeIII	GGCC	3 cut(s)	231, 512, 530
HapII	CCGG	4 cut(s)	364, 393, 427, 465
HgaI	GACGC	1 cut(s)	385
HhaI	GCGC	3 cut(s)	343, 345, 490
Hin1I	GRCGYC	1 cut(s)	396
Hin6I	GCGC	3 cut(s)	341, 343, 488
HinP1I	GCGC	3 cut(s)	341, 343, 488
HinfI	GANTC	3 cut(s)	290, 327, 356
HpaII	CCGG	4 cut(s)	364, 393, 427, 465
HphI	GGTGA	6 cut(s)	35, 47, 59, 226, 277, 391
Hpy188I	TCNGA	1 cut(s)	295
Hpy188III	TCNNGA	1 cut(s)	96
Hpy99I	CGWCG	5 cut(s)	33, 278, 281, 299, 326
HpyCH4III	ACNGT	2 cut(s)	65, 223
HpyCH4IV	ACGT	2 cut(s)	534, 545
HpyF10VI	GCNNNNNNNGC	9 cut(s)	177, 245, 254, 269, 278, 342, 494, 515, 548
HpyF3I	CTNAG	2 cut(s)	250, 476
HpySE526I	ACGT	2 cut(s)	534, 545
Hsp92I	GRCGYC	1 cut(s)	396
HspAI	GCGC	3 cut(s)	341, 343, 488
KspI	CCGCGG	1 cut(s)	510
Kzo9I	GATC	1 cut(s)	243
LmnI	GCTCC	4 cut(s)	12, 179, 429, 561
MaeII	ACGT	2 cut(s)	534, 545
MaeIII	GTNAC	3 cut(s)	65, 283, 397
MalI	GATC	1 cut(s)	245
MbiI	CCGCTC	1 cut(s)	174
MboI	GATC	1 cut(s)	243
MboII	GAAGA	2 cut(s)	40, 178
MhlI	GDGCHC	1 cut(s)	532
MluCI	AATT	1 cut(s)	159
MlyI	GAGTC	2 cut(s)	336, 365
MmeI	TCCRAC	2 cut(s)	141, 318
MspA1I	CMGCKG	1 cut(s)	509
MspI	CCGG	4 cut(s)	364, 393, 427, 465
MvnI	CGCG	3 cut(s)	242, 343, 509
MwoI	GCNNNNNNNGC	9 cut(s)	177, 245, 254, 269, 278, 342, 494, 515, 548
NdeII	GATC	1 cut(s)	243
NlaIV	GGNNCC	2 cut(s)	530, 563
NmeAIII	GCCGAG	2 cut(s)	207, 379
NmuCI	GTSAC	3 cut(s)	65, 283, 397
PalAI	GGCGCGCC	1 cut(s)	341
PauI	GCGCGC	1 cut(s)	341
PcsI	WCGNNNNNNNCGW	1 cut(s)	285
PfeI	GAWTC	1 cut(s)	290
PflFI	GACNNNGTC	1 cut(s)	326
PflMI	CCANNNNNTGG	1 cut(s)	337
PkrI	GCNGC	5 cut(s)	173, 241, 487, 511, 524
Ple19I	CGATCG	1 cut(s)	246
PleI	GAGTC	2 cut(s)	335, 364
PmaCI	CACGTG	1 cut(s)	535
PmlI	CACGTG	1 cut(s)	535
PpsI	GAGTC	2 cut(s)	335, 364
Ppu21I	YACGTR	1 cut(s)	535
PshAI	GACNNNNGTC	1 cut(s)	395
PspCI	CACGTG	1 cut(s)	535
PspN4I	GGNNCC	2 cut(s)	530, 563
PspOMI	GGGCCC	1 cut(s)	528
PspPI	GGNCC	4 cut(s)	429, 457, 528, 529
PsyI	GACNNNGTC	1 cut(s)	326
PteI	GCGCGC	1 cut(s)	341
PvuI	CGATCG	1 cut(s)	246
RgaI	GCGATCGC	1 cut(s)	246
Rsr2I	CGGWCCG	1 cut(s)	429
RsrII	CGGWCCG	1 cut(s)	429
SacII	CCGCGG	1 cut(s)	510
SatI	GCNGC	5 cut(s)	172, 240, 486, 510, 523
Sau3AI	GATC	1 cut(s)	243
Sau96I	GGNCC	4 cut(s)	429, 457, 528, 529
SchI	GAGTC	2 cut(s)	336, 365
SduI	GDGCHC	1 cut(s)	532
SetI	ASST	5 cut(s)	48, 459, 477, 537, 548
SfaAI	GCGATCGC	1 cut(s)	246
Sfr303I	CCGCGG	1 cut(s)	510
SgfI	GCGATCGC	1 cut(s)	246
SgrBI	CCGCGG	1 cut(s)	510
SgsI	GGCGCGCC	1 cut(s)	341
SinI	GGWCC	2 cut(s)	429, 457
Sse9I	AATT	1 cut(s)	159
StyI	CCWWGG	1 cut(s)	331
TaaI	ACNGT	2 cut(s)	65, 223
TaiI	ACGT	2 cut(s)	537, 548
TaqI	TCGA	1 cut(s)	108
TasI	AATT	1 cut(s)	159
TauI	GCSGC	5 cut(s)	174, 242, 488, 512, 525
TfiI	GAWTC	1 cut(s)	290
TseFI	GTSAC	3 cut(s)	65, 283, 397
Tsp45I	GTSAC	3 cut(s)	65, 283, 397
TspGWI	ACGGA	4 cut(s)	339, 397, 421, 449
Tth111I	GACNNNGTC	1 cut(s)	326
Van91I	CCANNNNNTGG	1 cut(s)	337
VpaK11BI	GGWCC	2 cut(s)	429, 457

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.