Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0004202

Physical Location & Seq

Genomic Coordinates Reverse (-)

50518406 .. 50519046

Gene Structure 641 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0357800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGTCATCGTGGGTCGCGCTCCGTGGCGGCTCTTATCCCTTTCCTTCTGCCATAGCCTGTAAATATGCTCCTAGGAGCCTGGTTCGAAACGGGGTTGTCCCGTTAGTGCATCGGGGGATGCTACAAGGAACTGAACACCCTTTGGGTGCCTGTCCCTTTGATCCATGTTTGGATCTCACCTCCTTCTCTCTTCAACTGGCTTTTCTGGTTGATAATTTGGCAGAAGAAGTTCTCCGTTTTGGAGATGGTTTGAGTCCTGGATTTCATGCCTTTGTATCTGGATTGCAGTTGTTTGGGTGCTTGATTGGAGCTTTTCTGGTGTCGGATCGTTCAGGTGCAGCAAGCTTCACTCTTCCTCCTCTCCGGTTTAGGCTAGAGTGCGAGTCTGACTTCATTCTCGACGGCGTCGCCGCTGTGACTGACAGTCTTCGGCCTTCTGTTGGGCCTTTTGTTTGCTGCTCTGTTGTTGTATCCCCAGGCTTGCCTAGTTTAAGCCCATTTGTATTTGGTTTTCTTGTTTCTAGGCCCAGCGTGTTGGGTTTGTTTGTTATTTTCATTGTGTTGTACTTCGTTATGTTGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

194

Amino Acids

20.75

Weight (kDa)

5.84

Isoelectric Point (pI)

61.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004202)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34310 AT4G34310 AT4G34310 AT4G34310 AT4G34310 AT4G34310 AT4G34310 AT4G34310 AT4G34310 AT4G34310
fragaria_vesca	FvH4_2g34840 FvH4_2g34840 FvH4_2g34840 FvH4_2g34840 FvH4_2g34840 FvH4_2g34840
malus_domestica	MD08G1105600.v1.1 MD15G1086600.v1.1
prunus_persica	Prupe.1G440200_v2.0.a1
pyrus_communis	pycom08g08660 pycom15g08150
rosa_chinensis	RchiOBHm_Chr6g0307221
rosa_laevigata	RLG00000010726
rosa_multiflora	Rmu_sc0000255.1_g000029 Rmu_sc0000547.1_g000019 Rmu_sc0001436.1_g000013
rosa_roxburghii	Rroxscaffold_7G00161070
rosa_rugosa	Rorug06G0357800
rosa_samantha	Rh6AG468400 Rh6BG432100 Rh6CG483600 Rh6DG470200
rosa_wichuraiana	Rw6G040810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	146
AccII	CGCG	1 cut(s)	17
AciI	CCGC	2 cut(s)	27, 411
AclWI	GGATC	3 cut(s)	155, 180, 333
AcyI	GRCGYC	1 cut(s)	405
AfaI	GTAC	1 cut(s)	566
AfiI	CCNNNNNNNGG	1 cut(s)	440
AgsI	TTSAA	1 cut(s)	194
AhdI	GACNNNNNGTC	1 cut(s)	423
AjnI	CCWGG	3 cut(s)	78, 256, 475
AluBI	AGCT	2 cut(s)	311, 345
AluI	AGCT	2 cut(s)	311, 345
AlwI	GGATC	3 cut(s)	155, 180, 333
AoxI	GGCC	3 cut(s)	431, 443, 524
ApeKI	GCWGC	2 cut(s)	338, 456
Asp700I	GAANNNNTTC	1 cut(s)	228
AspA2I	CCTAGG	1 cut(s)	71
AspLEI	GCGC	1 cut(s)	19
AspS9I	GGNCC	2 cut(s)	443, 525
AsuHPI	GGTGA	1 cut(s)	169
AsuII	TTCGAA	1 cut(s)	85
AvrII	CCTAGG	1 cut(s)	71
BanI	GGYRCC	1 cut(s)	146
BbsI	GAAGAC	1 cut(s)	419
BbvI	GCAGC	2 cut(s)	350, 443
BccI	CCATC	1 cut(s)	239
BceAI	ACGGC	1 cut(s)	418
BciT130I	CCWGG	3 cut(s)	80, 258, 477
BciVI	GTATCC	1 cut(s)	481
BfaI	CTAG	4 cut(s)	72, 374, 486, 522
BfuI	GTATCC	1 cut(s)	481
BisI	GCNGC	4 cut(s)	28, 339, 411, 457
BlnI	CCTAGG	1 cut(s)	71
BlsI	GCNGC	4 cut(s)	29, 340, 412, 458
Bme1390I	CCNGG	3 cut(s)	80, 258, 477
BmeRI	GACNNNNNGTC	1 cut(s)	423
BmgT120I	GGNCC	2 cut(s)	443, 525
BmiI	GGNNCC	2 cut(s)	77, 148
BmrFI	CCNGG	3 cut(s)	80, 258, 477
BmsI	GCATC	2 cut(s)	108, 118
BpiI	GAAGAC	1 cut(s)	419
Bpu14I	TTCGAA	1 cut(s)	85
BsaHI	GRCGYC	1 cut(s)	405
BsaJI	CCNNGG	3 cut(s)	22, 71, 475
BsaWI	WCCGGW	1 cut(s)	363
BsaXI	ACNNNNNCTCC	2 cut(s)	340, 370
Bsc4I	CCNNNNNNNGG	1 cut(s)	440
Bse1I	ACTGG	1 cut(s)	201
BseBI	CCWGG	3 cut(s)	80, 258, 477
BseDI	CCNNGG	3 cut(s)	22, 71, 475
BseGI	GGATG	1 cut(s)	123
BseLI	CCNNNNNNNGG	1 cut(s)	440
BseNI	ACTGG	1 cut(s)	201
BseRI	GAGGAG	1 cut(s)	348
BseXI	GCAGC	2 cut(s)	350, 443
BseYI	CCCAGC	1 cut(s)	527
BsgI	GTGCAG	1 cut(s)	357
Bsh1236I	CGCG	1 cut(s)	17
BshFI	GGCC	3 cut(s)	433, 445, 526
BshNI	GGYRCC	1 cut(s)	146
BsiSI	CCGG	1 cut(s)	364
BslFI	GGGAC	2 cut(s)	83, 138
BslI	CCNNNNNNNGG	1 cut(s)	440
BsmFI	GGGAC	2 cut(s)	83, 138
BsnI	GGCC	3 cut(s)	433, 445, 526
Bsp119I	TTCGAA	1 cut(s)	85
Bsp143I	GATC	3 cut(s)	160, 172, 325
BspACI	CCGC	2 cut(s)	27, 411
BspANI	GGCC	3 cut(s)	433, 445, 526
BspFNI	CGCG	1 cut(s)	17
BspLI	GGNNCC	2 cut(s)	77, 148
BspPI	GGATC	3 cut(s)	155, 180, 333
BspT104I	TTCGAA	1 cut(s)	85
BspT107I	GGYRCC	1 cut(s)	146
BsrI	ACTGG	1 cut(s)	201
BssECI	CCNNGG	3 cut(s)	22, 71, 475
BssMI	GATC	3 cut(s)	160, 172, 325
BssNI	GRCGYC	1 cut(s)	405
BssT1I	CCWWGG	1 cut(s)	71
Bst2UI	CCWGG	3 cut(s)	80, 258, 477
Bst4CI	ACNGT	1 cut(s)	425
Bst6I	CTCTTC	2 cut(s)	195, 357
BstACI	GRCGYC	1 cut(s)	405
BstBI	TTCGAA	1 cut(s)	85
BstC8I	GCNNGC	2 cut(s)	343, 482
BstDSI	CCRYGG	1 cut(s)	22
BstF5I	GGATG	1 cut(s)	123
BstFNI	CGCG	1 cut(s)	17
BstHHI	GCGC	1 cut(s)	19
BstKTI	GATC	3 cut(s)	163, 175, 328
BstMBI	GATC	3 cut(s)	160, 172, 325
BstNI	CCWGG	3 cut(s)	80, 258, 477
BstSCI	CCNGG	3 cut(s)	78, 256, 475
BstUI	CGCG	1 cut(s)	17
BstV1I	GCAGC	2 cut(s)	350, 443
BstV2I	GAAGAC	1 cut(s)	419
BstX2I	RGATCY	1 cut(s)	172
BstXI	CCANNNNNNTGG	1 cut(s)	535
BstYI	RGATCY	1 cut(s)	172
BsuI	GTATCC	1 cut(s)	481
BsuRI	GGCC	3 cut(s)	433, 445, 526
BtgI	CCRYGG	1 cut(s)	22
BtsCI	GGATG	1 cut(s)	123
Cac8I	GCNNGC	2 cut(s)	343, 482
CfoI	GCGC	1 cut(s)	19
Cfr13I	GGNCC	2 cut(s)	443, 525
CseI	GACGC	1 cut(s)	394
Csp6I	GTAC	1 cut(s)	565
CviAII	CATG	2 cut(s)	165, 266
CviQI	GTAC	1 cut(s)	565
DpnI	GATC	3 cut(s)	162, 174, 327
DpnII	GATC	3 cut(s)	160, 172, 325
DriI	GACNNNNNGTC	1 cut(s)	423
Eam1104I	CTCTTC	2 cut(s)	195, 357
Eam1105I	GACNNNNNGTC	1 cut(s)	423
EarI	CTCTTC	2 cut(s)	195, 357
Eco130I	CCWWGG	1 cut(s)	71
EcoRII	CCWGG	3 cut(s)	78, 256, 475
EcoT14I	CCWWGG	1 cut(s)	71
ErhI	CCWWGG	1 cut(s)	71
FaeI	CATG	2 cut(s)	168, 269
FaiI	YATR	5 cut(s)	53, 66, 166, 267, 575
FaqI	GGGAC	2 cut(s)	83, 138
FatI	CATG	2 cut(s)	164, 265
Fnu4HI	GCNGC	4 cut(s)	28, 339, 411, 457
FokI	GGATG	1 cut(s)	130
Fsp4HI	GCNGC	4 cut(s)	28, 339, 411, 457
FspBI	CTAG	4 cut(s)	72, 374, 486, 522
GlaI	GCGC	1 cut(s)	18
GluI	GCNGC	4 cut(s)	28, 339, 411, 457
GsaI	CCCAGC	1 cut(s)	531
HaeIII	GGCC	3 cut(s)	433, 445, 526
HapII	CCGG	1 cut(s)	364
HgaI	GACGC	1 cut(s)	394
HhaI	GCGC	1 cut(s)	19
Hin1I	GRCGYC	1 cut(s)	405
Hin1II	CATG	2 cut(s)	168, 269
Hin6I	GCGC	1 cut(s)	17
HinP1I	GCGC	1 cut(s)	17
HindIII	AAGCTT	1 cut(s)	343
HinfI	GANTC	2 cut(s)	253, 383
HpaII	CCGG	1 cut(s)	364
HphI	GGTGA	1 cut(s)	169
Hpy188I	TCNGA	2 cut(s)	325, 388
Hpy188III	TCNNGA	2 cut(s)	279, 398
Hpy99I	CGWCG	2 cut(s)	404, 410
HpyAV	CCTTC	3 cut(s)	54, 193, 444
HpyCH4III	ACNGT	1 cut(s)	425
HpyCH4V	TGCA	3 cut(s)	109, 286, 338
Hsp92I	GRCGYC	1 cut(s)	405
Hsp92II	CATG	2 cut(s)	168, 269
HspAI	GCGC	1 cut(s)	17
Kzo9I	GATC	3 cut(s)	160, 172, 325
LmnI	GCTCC	4 cut(s)	24, 73, 75, 308
Lsp1109I	GCAGC	2 cut(s)	350, 443
LweI	GCATC	2 cut(s)	108, 118
MaeI	CTAG	4 cut(s)	72, 374, 486, 522
MaeIII	GTNAC	1 cut(s)	415
MalI	GATC	3 cut(s)	162, 174, 327
MboI	GATC	3 cut(s)	160, 172, 325
MboII	GAAGA	4 cut(s)	182, 236, 344, 419
MflI	RGATCY	1 cut(s)	172
MluCI	AATT	1 cut(s)	214
MlyI	GAGTC	2 cut(s)	262, 392
MmeI	TCCRAC	1 cut(s)	303
MnlI	CCTC	3 cut(s)	190, 366, 369
MroXI	GAANNNNTTC	1 cut(s)	228
MseI	TTAA	2 cut(s)	491, 583
MspA1I	CMGCKG	1 cut(s)	413
MspI	CCGG	1 cut(s)	364
MspR9I	CCNGG	3 cut(s)	80, 258, 477
MvaI	CCWGG	3 cut(s)	80, 258, 477
MvnI	CGCG	1 cut(s)	17
NdeII	GATC	3 cut(s)	160, 172, 325
NlaIII	CATG	2 cut(s)	168, 269
NlaIV	GGNNCC	2 cut(s)	77, 148
NmuCI	GTSAC	1 cut(s)	415
NspV	TTCGAA	1 cut(s)	85
PdmI	GAANNNNTTC	1 cut(s)	228
PflFI	GACNNNGTC	1 cut(s)	404
PfoI	TCCNGGA	1 cut(s)	256
PkrI	GCNGC	4 cut(s)	29, 340, 412, 458
PleI	GAGTC	2 cut(s)	261, 391
PpsI	GAGTC	2 cut(s)	261, 391
Psp6I	CCWGG	3 cut(s)	78, 256, 475
PspFI	CCCAGC	1 cut(s)	527
PspGI	CCWGG	3 cut(s)	78, 256, 475
PspN4I	GGNNCC	2 cut(s)	77, 148
PspPI	GGNCC	2 cut(s)	443, 525
PsuI	RGATCY	1 cut(s)	172
PsyI	GACNNNGTC	1 cut(s)	404
RsaI	GTAC	1 cut(s)	566
RsaNI	GTAC	1 cut(s)	565
SaqAI	TTAA	2 cut(s)	491, 583
SatI	GCNGC	4 cut(s)	28, 339, 411, 457
Sau3AI	GATC	3 cut(s)	160, 172, 325
Sau96I	GGNCC	2 cut(s)	443, 525
SchI	GAGTC	2 cut(s)	262, 392
ScrFI	CCNGG	3 cut(s)	80, 258, 477
SetI	ASST	4 cut(s)	182, 313, 337, 347
SfaNI	GCATC	2 cut(s)	108, 118
SfuI	TTCGAA	1 cut(s)	85
Sse9I	AATT	1 cut(s)	214
SsiI	CCGC	2 cut(s)	27, 411
SspMI	CTAG	4 cut(s)	72, 374, 486, 522
StyD4I	CCNGG	3 cut(s)	78, 256, 475
StyI	CCWWGG	1 cut(s)	71
TaaI	ACNGT	1 cut(s)	425
TaqI	TCGA	2 cut(s)	85, 399
TasI	AATT	1 cut(s)	214
TatI	WGTACW	1 cut(s)	564
TauI	GCSGC	2 cut(s)	30, 413
Tru1I	TTAA	2 cut(s)	491, 583
Tru9I	TTAA	2 cut(s)	491, 583
TseFI	GTSAC	1 cut(s)	415
TseI	GCWGC	2 cut(s)	338, 456
Tsp45I	GTSAC	1 cut(s)	415
TspDTI	ATGAA	3 cut(s)	254, 382, 544
TspGWI	ACGGA	2 cut(s)	11, 224
Tth111I	GACNNNGTC	1 cut(s)	404
XmaJI	CCTAGG	1 cut(s)	71
XmnI	GAANNNNTTC	1 cut(s)	228
XspI	CTAG	4 cut(s)	72, 374, 486, 522

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.