Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000329.1

Orthogroup ID

OG0020578

Physical Location & Seq

Genomic Coordinates Forward (+)

61131 .. 62365

Gene Structure 1235 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000329.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

atgtccttctcccccaaatcgattcagccttatcagaggtctggaagcggtcgtaggcaacaacaatttgatatctcccccaaggaggtgaagtggttgctggagtattccccaattcgattctgccttatcagagtctgcatcgtcggcggcggcatcggcggcgcttccgtggcccacttcctccgcgaatactctccccccactctcaacctcacgatccgaatgttcgagcgaaacggcgtcgtcgagggacgcatggccgctgtcaacgtctccggcgagttcttcgaggccggcacctcgattctccaccccaagaacttctacgccgtcaactacaccaggctgctgaacctcaccgtcaacagtccgtcagatgattccgagggttttggaatttgggatggggagaagttcatcttcaagactttgagcgtgaagtccaagcttccgtttgtgaacaggattgtttcgctggcgaattcgctgctgctgttcgtccgatacggctactcgctcgtcagaatggatagattcgtagagactactgtgaatagtttcttgaagtattatgagagcttaaagacgaggccggttttcgagtcggtggatgagatgcttaaatgggctggtttgcacaatctcatggcgaggactttggctgaggagctggctgattctggcttgtgtcccttgttgatacaagagcttgtcactggtatgcttagttcttttttaagcttagttcttttgattgtttggggtaggccggttttcgagtcggtggatgagaatcatgagatgcttaatgctgctttatgcattgccctttattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000098 GO:0001101 GO:0001735 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006082 GO:0006508 GO:0006520 GO:0006575 GO:0006629 GO:0006644 GO:0006720 GO:0006721 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009063 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016054 GO:0016491 GO:0016667 GO:0016670 GO:0019538 GO:0019637 GO:0019752 GO:0019941 GO:0023052 GO:0030163 GO:0030327 GO:0030328 GO:0030329 GO:0031090 GO:0032870 GO:0033993 GO:0042219 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044255 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044273 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045338 GO:0046395 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0055114 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0097305 GO:0097306 GO:0098588 GO:0098805 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00900 ko01130 map00900 map01130

Pfam Domains

Protein Families

NAD_binding_8 Prenylcys_lyase

Protein Analysis

279

Amino Acids

31.49

Weight (kDa)

7.66

Isoelectric Point (pI)

35.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020578)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0261231
rosa_multiflora	Rmu_sc0000329.1_g000012 Rmu_ssc0000451.1_g000003
rosa_roxburghii	Rroxscaffold_4G00313240
rosa_samantha	Rh2AG660600 Rh2BG671400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	299
AccII	CGCG	1 cut(s)	189
AciI	CCGC	6 cut(s)	48, 150, 153, 162, 187, 264
AclWI	GGATC	1 cut(s)	214
AcoI	YGGCCR	1 cut(s)	261
AcsI	RAATTY	2 cut(s)	399, 484
AcyI	GRCGYC	1 cut(s)	243
AfiI	CCNNNNNNNGG	1 cut(s)	85
AgsI	TTSAA	2 cut(s)	427, 568
AjnI	CCWGG	1 cut(s)	344
AluBI	AGCT	5 cut(s)	451, 582, 673, 712, 744
AluI	AGCT	5 cut(s)	451, 582, 673, 712, 744
Alw26I	GTCTC	2 cut(s)	280, 539
AlwI	GGATC	1 cut(s)	214
AlwNI	CAGNNNCTG	1 cut(s)	138
AoxI	GGCC	5 cut(s)	174, 261, 294, 593, 770
ApeKI	GCWGC	4 cut(s)	349, 490, 493, 815
ApoI	RAATTY	2 cut(s)	399, 484
Asp700I	GAANNNNTTC	1 cut(s)	560
AspLEI	GCGC	1 cut(s)	167
AspS9I	GGNCC	1 cut(s)	175
AsuHPI	GGTGA	2 cut(s)	100, 352
BanI	GGYRCC	1 cut(s)	299
BbvCI	CCTCAGC	1 cut(s)	666
BbvI	GCAGC	4 cut(s)	336, 477, 480, 802
BccI	CCATC	1 cut(s)	401
BceAI	ACGGC	3 cut(s)	256, 317, 526
BcgI	CGANNNNNNTGC	2 cut(s)	472, 506
BciT130I	CCWGG	1 cut(s)	346
BcoDI	GTCTC	2 cut(s)	280, 539
BfoI	RGCGCY	1 cut(s)	168
BisI	GCNGC	8 cut(s)	151, 154, 163, 264, 350, 491, 494, 816
BlsI	GCNGC	8 cut(s)	152, 155, 164, 265, 351, 492, 495, 817
Bme1390I	CCNGG	1 cut(s)	346
BmgT120I	GGNCC	1 cut(s)	175
BmiI	GGNNCC	1 cut(s)	301
BmrFI	CCNGG	1 cut(s)	346
BmsI	GCATC	4 cut(s)	150, 165, 609, 795
BpmI	CTGGAG	1 cut(s)	122
Bpu10I	CCTNAGC	1 cut(s)	666
Bsa29I	ATCGAT	1 cut(s)	20
BsaBI	GATNNNNATC	1 cut(s)	795
BsaHI	GRCGYC	1 cut(s)	243
BsaJI	CCNNGG	3 cut(s)	81, 171, 387
BsaXI	ACNNNNNCTCC	2 cut(s)	77, 107
Bsc4I	CCNNNNNNNGG	1 cut(s)	85
Bse118I	RCCGGY	3 cut(s)	296, 595, 772
Bse1I	ACTGG	1 cut(s)	724
Bse3DI	GCAATG	1 cut(s)	825
Bse8I	GATNNNNATC	1 cut(s)	795
BseBI	CCWGG	1 cut(s)	346
BseCI	ATCGAT	1 cut(s)	20
BseDI	CCNNGG	3 cut(s)	81, 171, 387
BseGI	GGATG	3 cut(s)	412, 619, 796
BseJI	GATNNNNATC	1 cut(s)	795
BseLI	CCNNNNNNNGG	1 cut(s)	85
BseMI	GCAATG	1 cut(s)	825
BseMII	CTCAG	1 cut(s)	657
BseNI	ACTGG	1 cut(s)	724
BseRI	GAGGAG	1 cut(s)	683
BseXI	GCAGC	4 cut(s)	336, 477, 480, 802
Bsh1236I	CGCG	1 cut(s)	189
Bsh1285I	CGRYCG	1 cut(s)	52
BshFI	GGCC	5 cut(s)	176, 263, 296, 595, 772
BshNI	GGYRCC	1 cut(s)	299
BshVI	ATCGAT	1 cut(s)	20
BsiEI	CGRYCG	1 cut(s)	52
BsiSI	CCGG	4 cut(s)	279, 297, 596, 773
BslFI	GGGAC	2 cut(s)	267, 678
BslI	CCNNNNNNNGG	1 cut(s)	85
BsmAI	GTCTC	2 cut(s)	280, 539
BsmBI	CGTCTC	1 cut(s)	280
BsmFI	GGGAC	2 cut(s)	267, 678
BsnI	GGCC	5 cut(s)	176, 263, 296, 595, 772
Bsp143I	GATC	1 cut(s)	219
BspACI	CCGC	6 cut(s)	48, 150, 153, 162, 187, 264
BspANI	GGCC	5 cut(s)	176, 263, 296, 595, 772
BspCNI	CTCAG	1 cut(s)	658
BspDI	ATCGAT	1 cut(s)	20
BspFNI	CGCG	1 cut(s)	189
BspHI	TCATGA	1 cut(s)	799
BspLI	GGNNCC	1 cut(s)	301
BspPI	GGATC	1 cut(s)	214
BspT107I	GGYRCC	1 cut(s)	299
BsrDI	GCAATG	1 cut(s)	825
BsrFI	RCCGGY	3 cut(s)	296, 595, 772
BsrI	ACTGG	1 cut(s)	724
BssAI	RCCGGY	3 cut(s)	296, 595, 772
BssECI	CCNNGG	3 cut(s)	81, 171, 387
BssMI	GATC	1 cut(s)	219
BssNI	GRCGYC	1 cut(s)	243
BssT1I	CCWWGG	1 cut(s)	81
Bst2UI	CCWGG	1 cut(s)	346
Bst4CI	ACNGT	3 cut(s)	364, 371, 553
BstACI	GRCGYC	1 cut(s)	243
BstC8I	GCNNGC	3 cut(s)	298, 480, 675
BstDEI	CTNAG	3 cut(s)	666, 728, 745
BstDSI	CCRYGG	1 cut(s)	171
BstF5I	GGATG	3 cut(s)	412, 619, 796
BstFNI	CGCG	1 cut(s)	189
BstH2I	RGCGCY	1 cut(s)	168
BstHHI	GCGC	1 cut(s)	167
BstKTI	GATC	1 cut(s)	222
BstMAI	GTCTC	2 cut(s)	280, 539
BstMBI	GATC	1 cut(s)	219
BstMCI	CGRYCG	1 cut(s)	52
BstMWI	GCNNNNNNNGC	4 cut(s)	147, 159, 162, 173
BstNI	CCWGG	1 cut(s)	346
BstSCI	CCNGG	1 cut(s)	344
BstUI	CGCG	1 cut(s)	189
BstV1I	GCAGC	4 cut(s)	336, 477, 480, 802
Bsu15I	ATCGAT	1 cut(s)	20
BsuRI	GGCC	5 cut(s)	176, 263, 296, 595, 772
BsuTUI	ATCGAT	1 cut(s)	20
BtgI	CCRYGG	1 cut(s)	171
BtsCI	GGATG	3 cut(s)	412, 619, 796
BtsIMutI	CAGTG	1 cut(s)	717
Cac8I	GCNNGC	3 cut(s)	298, 480, 675
CaiI	CAGNNNCTG	1 cut(s)	138
CciI	TCATGA	1 cut(s)	799
CfoI	GCGC	1 cut(s)	167
Cfr10I	RCCGGY	3 cut(s)	296, 595, 772
Cfr13I	GGNCC	1 cut(s)	175
ClaI	ATCGAT	1 cut(s)	20
CseI	GACGC	2 cut(s)	232, 264
CviAII	CATG	3 cut(s)	259, 649, 800
DdeI	CTNAG	3 cut(s)	666, 728, 745
DpnI	GATC	1 cut(s)	221
DpnII	GATC	1 cut(s)	219
EaeI	YGGCCR	1 cut(s)	261
Eco130I	CCWWGG	1 cut(s)	81
Eco32I	GATATC	1 cut(s)	73
EcoRI	GAATTC	1 cut(s)	484
EcoRII	CCWGG	1 cut(s)	344
EcoRV	GATATC	1 cut(s)	73
EcoT14I	CCWWGG	1 cut(s)	81
EcoT22I	ATGCAT	1 cut(s)	827
ErhI	CCWWGG	1 cut(s)	81
Esp3I	CGTCTC	1 cut(s)	280
FaeI	CATG	3 cut(s)	262, 652, 803
FaiI	YATR	6 cut(s)	260, 576, 650, 725, 801, 823
FalI	AAGNNNNNCTT	2 cut(s)	407, 439
FaqI	GGGAC	2 cut(s)	267, 678
FatI	CATG	3 cut(s)	258, 648, 799
Fnu4HI	GCNGC	8 cut(s)	151, 154, 163, 264, 350, 491, 494, 816
FokI	GGATG	3 cut(s)	419, 626, 803
Fsp4HI	GCNGC	8 cut(s)	151, 154, 163, 264, 350, 491, 494, 816
GlaI	GCGC	1 cut(s)	166
GluI	GCNGC	8 cut(s)	151, 154, 163, 264, 350, 491, 494, 816
GsuI	CTGGAG	1 cut(s)	122
HaeII	RGCGCY	1 cut(s)	168
HaeIII	GGCC	5 cut(s)	176, 263, 296, 595, 772
HapII	CCGG	4 cut(s)	279, 297, 596, 773
HgaI	GACGC	2 cut(s)	232, 264
HhaI	GCGC	1 cut(s)	167
Hin1I	GRCGYC	1 cut(s)	243
Hin1II	CATG	3 cut(s)	262, 652, 803
Hin6I	GCGC	1 cut(s)	165
HinP1I	GCGC	1 cut(s)	165
HincII	GTYRAC	3 cut(s)	271, 337, 367
HindII	GTYRAC	3 cut(s)	271, 337, 367
HindIII	AAGCTT	2 cut(s)	449, 742
HpaII	CCGG	4 cut(s)	279, 297, 596, 773
HphI	GGTGA	2 cut(s)	100, 352
Hpy166II	GTNNAC	4 cut(s)	271, 337, 367, 463
Hpy188I	TCNGA	7 cut(s)	36, 134, 224, 379, 388, 506, 527
Hpy188III	TCNNGA	5 cut(s)	42, 217, 427, 565, 800
Hpy8I	GTNNAC	4 cut(s)	271, 337, 367, 463
Hpy99I	CGWCG	3 cut(s)	149, 248, 251
HpyAV	CCTTC	1 cut(s)	16
HpyCH4III	ACNGT	3 cut(s)	364, 371, 553
HpyCH4IV	ACGT	1 cut(s)	273
HpyCH4V	TGCA	3 cut(s)	141, 640, 825
HpyF10VI	GCNNNNNNNGC	4 cut(s)	147, 159, 162, 173
HpyF3I	CTNAG	3 cut(s)	666, 728, 745
HpySE526I	ACGT	1 cut(s)	273
Hsp92I	GRCGYC	1 cut(s)	243
Hsp92II	CATG	3 cut(s)	262, 652, 803
HspAI	GCGC	1 cut(s)	165
KroI	GCCGGC	1 cut(s)	296
KroNI	GCCGGC	1 cut(s)	298
Kzo9I	GATC	1 cut(s)	219
LmnI	GCTCC	1 cut(s)	670
Lsp1109I	GCAGC	4 cut(s)	336, 477, 480, 802
LweI	GCATC	4 cut(s)	150, 165, 609, 795
MaeII	ACGT	1 cut(s)	273
MaeIII	GTNAC	1 cut(s)	715
MalI	GATC	1 cut(s)	221
MboI	GATC	1 cut(s)	219
MboII	GAAGA	2 cut(s)	280, 415
MluCI	AATT	4 cut(s)	65, 114, 399, 484
MlyI	GAGTC	3 cut(s)	144, 614, 791
Mph1103I	ATGCAT	1 cut(s)	827
MroNI	GCCGGC	1 cut(s)	296
MroXI	GAANNNNTTC	1 cut(s)	560
MseI	TTAA	4 cut(s)	584, 624, 740, 810
MslI	CAYNNNNRTG	1 cut(s)	722
MspA1I	CMGCKG	1 cut(s)	266
MspI	CCGG	4 cut(s)	279, 297, 596, 773
MspR9I	CCNGG	1 cut(s)	346
MvaI	CCWGG	1 cut(s)	346
MvnI	CGCG	1 cut(s)	189
MwoI	GCNNNNNNNGC	4 cut(s)	147, 159, 162, 173
NaeI	GCCGGC	1 cut(s)	298
NdeII	GATC	1 cut(s)	219
NgoMIV	GCCGGC	1 cut(s)	296
NlaIII	CATG	3 cut(s)	262, 652, 803
NlaIV	GGNNCC	1 cut(s)	301
NmuCI	GTSAC	1 cut(s)	715
NsiI	ATGCAT	1 cut(s)	827
PagI	TCATGA	1 cut(s)	799
PcsI	WCGNNNNNNNCGW	2 cut(s)	246, 279
PdiI	GCCGGC	1 cut(s)	298
PdmI	GAANNNNTTC	1 cut(s)	560
PfeI	GAWTC	7 cut(s)	22, 120, 307, 383, 537, 680, 796
PkrI	GCNGC	8 cut(s)	152, 155, 164, 265, 351, 492, 495, 817
PleI	GAGTC	3 cut(s)	143, 613, 790
PpsI	GAGTC	3 cut(s)	143, 613, 790
Psp6I	CCWGG	1 cut(s)	344
PspGI	CCWGG	1 cut(s)	344
PspN4I	GGNNCC	1 cut(s)	301
PspPI	GGNCC	1 cut(s)	175
PsrI	GAACNNNNNNTAC	2 cut(s)	715, 747
PstNI	CAGNNNCTG	1 cut(s)	138
RseI	CAYNNNNRTG	1 cut(s)	722
SaqAI	TTAA	4 cut(s)	584, 624, 740, 810
SatI	GCNGC	8 cut(s)	151, 154, 163, 264, 350, 491, 494, 816
Sau3AI	GATC	1 cut(s)	219
Sau96I	GGNCC	1 cut(s)	175
SchI	GAGTC	3 cut(s)	144, 614, 791
ScrFI	CCNGG	1 cut(s)	346
SfaNI	GCATC	4 cut(s)	150, 165, 609, 795
SmiMI	CAYNNNNRTG	1 cut(s)	722
Sse9I	AATT	4 cut(s)	65, 114, 399, 484
SsiI	CCGC	6 cut(s)	48, 150, 153, 162, 187, 264
StyD4I	CCNGG	1 cut(s)	344
StyI	CCWWGG	1 cut(s)	81
TaaI	ACNGT	3 cut(s)	364, 371, 553
TaiI	ACGT	1 cut(s)	276
TaqI	TCGA	8 cut(s)	20, 118, 231, 249, 291, 305, 603, 780
TasI	AATT	4 cut(s)	65, 114, 399, 484
TauI	GCSGC	4 cut(s)	153, 156, 165, 266
TfiI	GAWTC	7 cut(s)	22, 120, 307, 383, 537, 680, 796
Tru1I	TTAA	4 cut(s)	584, 624, 740, 810
Tru9I	TTAA	4 cut(s)	584, 624, 740, 810
TscAI	CASTG	1 cut(s)	724
TseFI	GTSAC	1 cut(s)	715
TseI	GCWGC	4 cut(s)	349, 490, 493, 815
Tsp45I	GTSAC	1 cut(s)	715
TspDTI	ATGAA	1 cut(s)	409
TspGWI	ACGGA	3 cut(s)	160, 363, 444
TspRI	CASTG	1 cut(s)	724
XapI	RAATTY	2 cut(s)	399, 484
XmnI	GAANNNNTTC	1 cut(s)	560
Zsp2I	ATGCAT	1 cut(s)	827

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.