Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0020578

Physical Location & Seq

Genomic Coordinates Forward (+)

88317126 .. 88319360

Gene Structure 2235 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG671400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGTTCGAGCGAAACGGCGTCGTCGGGGGACGCATGGCCACTGTCAACGTCTCCGGCGAGTTCTTCGAGGCCGGCGCCTCGATTCTCCACCCCAAGAACTTCTACGCCGTCAACTACACCAGGCTGCTGAACCTCACCGTCAACAGTCCGTCGGATGATTCCGAGGGTTTTGGAATTTGGGATGGGGAGAAGTTCATCTTCAAGACTCTGAGCGTGAAGTCCAAGCTTCCGTTTGTGAACAGGATTGTTTCGCTGGCGAATTCGCTGCTGCTGTTCGTCCGATACGGCTACTCGCTCGTCAGAATGGATAGATTCGTAGAGGTACTTCTACTTGTGCCTAGCGTGTTTCGGATGTGTGATTTGGTTTTTCTGGTGCAGACTACTGTGAATAGTTTCTTGAAGTATTATGAGAGCTTAAAGACGAGGCCGGTTTTTGAGTCGGTGGATGAGATGCTTAAATGGGCTGGTTTGCACAATCTCACGGCGAGGACTTTGGCTGAGGAGCTGGCTGAATCTGGCTTGTGTCCCTTGTTGATACAAGAGCTTGTCACTGGAAAACTGCTACTGCCCATTTCGACTAGCTCTATGAAGCAGTGGTTGAAGAAATCTTGTATTCCTTTCGTACTATATACTCACAGATGTAATATGTATACAAAGGCTATGTTGGTTCCTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000098 GO:0001101 GO:0001735 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006082 GO:0006508 GO:0006520 GO:0006575 GO:0006629 GO:0006644 GO:0006720 GO:0006721 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009063 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016054 GO:0016491 GO:0016667 GO:0016670 GO:0019538 GO:0019637 GO:0019752 GO:0019941 GO:0023052 GO:0030163 GO:0030327 GO:0030328 GO:0030329 GO:0031090 GO:0032870 GO:0033993 GO:0042219 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044255 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044273 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045338 GO:0046395 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0055114 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0097305 GO:0097306 GO:0098588 GO:0098805 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00900 ko01130 map00900 map01130

Pfam Domains

Protein Families

NAD_binding_8 Prenylcys_lyase

Protein Analysis

225

Amino Acids

25.51

Weight (kDa)

9.01

Isoelectric Point (pI)

28.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Amino_oxidase	PF01593	2 - 54	3e-06	Flavin containing amine oxidoreductase
Prenylcys_lyase	PF07156	123 - 185	6e-11	Prenylcysteine lyase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020578)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0261231
rosa_multiflora	Rmu_sc0000329.1_g000012 Rmu_ssc0000451.1_g000003
rosa_roxburghii	Rroxscaffold_4G00313240
rosa_samantha	Rh2AG660600 Rh2BG671400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	74
AccI	GTMKAC	1 cut(s)	650
AcoI	YGGCCR	1 cut(s)	36
AcsI	RAATTY	2 cut(s)	174, 259
AcyI	GRCGYC	2 cut(s)	18, 75
AfaI	GTAC	2 cut(s)	324, 624
AgsI	TTSAA	3 cut(s)	202, 400, 601
AjnI	CCWGG	1 cut(s)	119
AluBI	AGCT	5 cut(s)	226, 414, 505, 544, 582
AluI	AGCT	5 cut(s)	226, 414, 505, 544, 582
Alw26I	GTCTC	1 cut(s)	55
AoxI	GGCC	3 cut(s)	36, 69, 425
ApeKI	GCWGC	3 cut(s)	124, 265, 268
ApoI	RAATTY	2 cut(s)	174, 259
Asp700I	GAANNNNTTC	1 cut(s)	392
AspLEI	GCGC	1 cut(s)	77
AsuHPI	GGTGA	1 cut(s)	127
BalI	TGGCCA	1 cut(s)	38
BanI	GGYRCC	1 cut(s)	74
BarI	GAAGNNNNNNTAC	2 cut(s)	309, 341
BbvCI	CCTCAGC	1 cut(s)	498
BbvI	GCAGC	3 cut(s)	111, 252, 255
BccI	CCATC	1 cut(s)	176
BceAI	ACGGC	4 cut(s)	31, 92, 301, 498
BcgI	CGANNNNNNTGC	2 cut(s)	247, 281
BciT130I	CCWGG	1 cut(s)	121
BcoDI	GTCTC	1 cut(s)	55
BfaI	CTAG	2 cut(s)	339, 579
BfoI	RGCGCY	1 cut(s)	78
BisI	GCNGC	3 cut(s)	125, 266, 269
BlsI	GCNGC	3 cut(s)	126, 267, 270
Bme1390I	CCNGG	1 cut(s)	121
BmiI	GGNNCC	2 cut(s)	76, 669
BmrFI	CCNGG	1 cut(s)	121
BmsI	GCATC	1 cut(s)	441
Bpu10I	CCTNAGC	1 cut(s)	498
BsaHI	GRCGYC	2 cut(s)	18, 75
BsaJI	CCNNGG	1 cut(s)	162
Bse118I	RCCGGY	2 cut(s)	71, 427
Bse1I	ACTGG	1 cut(s)	556
BseBI	CCWGG	1 cut(s)	121
BseDI	CCNNGG	1 cut(s)	162
BseGI	GGATG	4 cut(s)	160, 187, 357, 451
BseMII	CTCAG	2 cut(s)	200, 489
BseNI	ACTGG	1 cut(s)	556
BseRI	GAGGAG	1 cut(s)	515
BseXI	GCAGC	3 cut(s)	111, 252, 255
BsgI	GTGCAG	1 cut(s)	395
BshFI	GGCC	3 cut(s)	38, 71, 427
BshNI	GGYRCC	1 cut(s)	74
BsiSI	CCGG	3 cut(s)	54, 72, 428
BslFI	GGGAC	2 cut(s)	42, 510
BsmAI	GTCTC	1 cut(s)	55
BsmBI	CGTCTC	1 cut(s)	55
BsmFI	GGGAC	2 cut(s)	42, 510
BsnI	GGCC	3 cut(s)	38, 71, 427
BspANI	GGCC	3 cut(s)	38, 71, 427
BspCNI	CTCAG	2 cut(s)	201, 490
BspLI	GGNNCC	2 cut(s)	76, 669
BspT107I	GGYRCC	1 cut(s)	74
BsrFI	RCCGGY	2 cut(s)	71, 427
BsrI	ACTGG	1 cut(s)	556
BssAI	RCCGGY	2 cut(s)	71, 427
BssECI	CCNNGG	1 cut(s)	162
BssNAI	GTATAC	1 cut(s)	651
BssNI	GRCGYC	2 cut(s)	18, 75
Bst1107I	GTATAC	1 cut(s)	651
Bst2UI	CCWGG	1 cut(s)	121
Bst4CI	ACNGT	4 cut(s)	43, 139, 146, 385
BstACI	GRCGYC	2 cut(s)	18, 75
BstC8I	GCNNGC	3 cut(s)	73, 255, 507
BstDEI	CTNAG	2 cut(s)	209, 498
BstF5I	GGATG	4 cut(s)	160, 187, 357, 451
BstH2I	RGCGCY	1 cut(s)	78
BstHHI	GCGC	1 cut(s)	77
BstMAI	GTCTC	1 cut(s)	55
BstNI	CCWGG	1 cut(s)	121
BstSCI	CCNGG	1 cut(s)	119
BstV1I	GCAGC	3 cut(s)	111, 252, 255
BstZ17I	GTATAC	1 cut(s)	651
BsuRI	GGCC	3 cut(s)	38, 71, 427
BtsCI	GGATG	4 cut(s)	160, 187, 357, 451
BtsI	GCAGTG	1 cut(s)	599
BtsIMutI	CAGTG	3 cut(s)	39, 549, 599
Cac8I	GCNNGC	3 cut(s)	73, 255, 507
CfoI	GCGC	1 cut(s)	77
Cfr10I	RCCGGY	2 cut(s)	71, 427
CseI	GACGC	2 cut(s)	7, 39
Csp6I	GTAC	2 cut(s)	323, 623
CviAII	CATG	1 cut(s)	34
CviQI	GTAC	2 cut(s)	323, 623
DdeI	CTNAG	2 cut(s)	209, 498
DinI	GGCGCC	1 cut(s)	76
EaeI	YGGCCR	1 cut(s)	36
EcoRI	GAATTC	1 cut(s)	259
EcoRII	CCWGG	1 cut(s)	119
EgeI	GGCGCC	1 cut(s)	76
EheI	GGCGCC	1 cut(s)	76
Esp3I	CGTCTC	1 cut(s)	55
FaeI	CATG	1 cut(s)	37
FaiI	YATR	8 cut(s)	35, 408, 587, 628, 630, 647, 651, 662
FalI	AAGNNNNNCTT	2 cut(s)	182, 214
FaqI	GGGAC	2 cut(s)	42, 510
FatI	CATG	1 cut(s)	33
FblI	GTMKAC	1 cut(s)	650
Fnu4HI	GCNGC	3 cut(s)	125, 266, 269
FokI	GGATG	4 cut(s)	167, 194, 364, 458
Fsp4HI	GCNGC	3 cut(s)	125, 266, 269
FspBI	CTAG	2 cut(s)	339, 579
GlaI	GCGC	1 cut(s)	76
GluI	GCNGC	3 cut(s)	125, 266, 269
HaeII	RGCGCY	1 cut(s)	78
HaeIII	GGCC	3 cut(s)	38, 71, 427
HapII	CCGG	3 cut(s)	54, 72, 428
HgaI	GACGC	2 cut(s)	7, 39
HhaI	GCGC	1 cut(s)	77
Hin1I	GRCGYC	2 cut(s)	18, 75
Hin1II	CATG	1 cut(s)	37
Hin6I	GCGC	1 cut(s)	75
HinP1I	GCGC	1 cut(s)	75
HincII	GTYRAC	3 cut(s)	46, 112, 142
HindII	GTYRAC	3 cut(s)	46, 112, 142
HindIII	AAGCTT	1 cut(s)	224
HinfI	GANTC	6 cut(s)	82, 158, 205, 312, 437, 512
HpaII	CCGG	3 cut(s)	54, 72, 428
HphI	GGTGA	1 cut(s)	127
Hpy166II	GTNNAC	5 cut(s)	46, 112, 142, 238, 651
Hpy188I	TCNGA	6 cut(s)	154, 163, 210, 281, 302, 351
Hpy188III	TCNNGA	2 cut(s)	202, 397
Hpy8I	GTNNAC	5 cut(s)	46, 112, 142, 238, 651
Hpy99I	CGWCG	3 cut(s)	23, 26, 154
HpyCH4III	ACNGT	4 cut(s)	43, 139, 146, 385
HpyCH4IV	ACGT	1 cut(s)	48
HpyCH4V	TGCA	2 cut(s)	376, 472
HpyF3I	CTNAG	2 cut(s)	209, 498
HpySE526I	ACGT	1 cut(s)	48
Hsp92I	GRCGYC	2 cut(s)	18, 75
Hsp92II	CATG	1 cut(s)	37
HspAI	GCGC	1 cut(s)	75
KasI	GGCGCC	1 cut(s)	74
KroI	GCCGGC	1 cut(s)	71
KroNI	GCCGGC	1 cut(s)	73
LmnI	GCTCC	1 cut(s)	502
Lsp1109I	GCAGC	3 cut(s)	111, 252, 255
LweI	GCATC	1 cut(s)	441
MaeI	CTAG	2 cut(s)	339, 579
MaeII	ACGT	1 cut(s)	48
MaeIII	GTNAC	1 cut(s)	547
MboII	GAAGA	3 cut(s)	55, 190, 613
MlsI	TGGCCA	1 cut(s)	38
MluCI	AATT	3 cut(s)	174, 259, 673
MluNI	TGGCCA	1 cut(s)	38
Mly113I	GGCGCC	1 cut(s)	75
MlyI	GAGTC	2 cut(s)	199, 446
MmeI	TCCRAC	1 cut(s)	132
MnlI	CCTC	8 cut(s)	61, 88, 143, 157, 313, 417, 480, 493
Mox20I	TGGCCA	1 cut(s)	38
MroNI	GCCGGC	1 cut(s)	71
MroXI	GAANNNNTTC	1 cut(s)	392
MscI	TGGCCA	1 cut(s)	38
MseI	TTAA	3 cut(s)	416, 456, 676
Msp20I	TGGCCA	1 cut(s)	38
MspI	CCGG	3 cut(s)	54, 72, 428
MspR9I	CCNGG	1 cut(s)	121
MvaI	CCWGG	1 cut(s)	121
NaeI	GCCGGC	1 cut(s)	73
NarI	GGCGCC	1 cut(s)	75
NgoMIV	GCCGGC	1 cut(s)	71
NlaIII	CATG	1 cut(s)	37
NlaIV	GGNNCC	2 cut(s)	76, 669
NmuCI	GTSAC	1 cut(s)	547
PcsI	WCGNNNNNNNCGW	1 cut(s)	54
PdiI	GCCGGC	1 cut(s)	73
PdmI	GAANNNNTTC	1 cut(s)	392
PfeI	GAWTC	4 cut(s)	82, 158, 312, 512
PkrI	GCNGC	3 cut(s)	126, 267, 270
PleI	GAGTC	2 cut(s)	199, 445
PluTI	GGCGCC	1 cut(s)	78
PpsI	GAGTC	2 cut(s)	199, 445
Psp6I	CCWGG	1 cut(s)	119
PspGI	CCWGG	1 cut(s)	119
PspN4I	GGNNCC	2 cut(s)	76, 669
RsaI	GTAC	2 cut(s)	324, 624
RsaNI	GTAC	2 cut(s)	323, 623
SaqAI	TTAA	3 cut(s)	416, 456, 676
SatI	GCNGC	3 cut(s)	125, 266, 269
SchI	GAGTC	2 cut(s)	199, 446
ScrFI	CCNGG	1 cut(s)	121
SetI	ASST	8 cut(s)	51, 135, 228, 324, 416, 507, 546, 584
SfaNI	GCATC	1 cut(s)	441
SfoI	GGCGCC	1 cut(s)	76
Sse9I	AATT	3 cut(s)	174, 259, 673
SspDI	GGCGCC	1 cut(s)	74
SspMI	CTAG	2 cut(s)	339, 579
StyD4I	CCNGG	1 cut(s)	119
TaaI	ACNGT	4 cut(s)	43, 139, 146, 385
TaiI	ACGT	1 cut(s)	51
TaqI	TCGA	4 cut(s)	6, 66, 80, 575
TasI	AATT	3 cut(s)	174, 259, 673
TfiI	GAWTC	4 cut(s)	82, 158, 312, 512
Tru1I	TTAA	3 cut(s)	416, 456, 676
Tru9I	TTAA	3 cut(s)	416, 456, 676
TscAI	CASTG	3 cut(s)	46, 556, 599
TseFI	GTSAC	1 cut(s)	547
TseI	GCWGC	3 cut(s)	124, 265, 268
Tsp45I	GTSAC	1 cut(s)	547
TspDTI	ATGAA	2 cut(s)	184, 602
TspGWI	ACGGA	2 cut(s)	138, 219
TspRI	CASTG	3 cut(s)	46, 556, 599
XapI	RAATTY	2 cut(s)	174, 259
XmiI	GTMKAC	1 cut(s)	650
XmnI	GAANNNNTTC	1 cut(s)	392
XspI	CTAG	2 cut(s)	339, 579

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.