Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0020578

Physical Location & Seq

Genomic Coordinates Reverse (-)

36480004 .. 36482360

Gene Structure 2357 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00313240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGTTCGAGCGAAACGGCGTCGTCGGGGGACGCATGGCTACTGTCAACGTCTCCGGCGAGTTCTTCGAGGCCGGCGCCTCGATTCTCCACCCCAAGAACTTCTACGCCGTCAACTACACTAGGCTGCTGAACCTCACCGTCAACAGTCCGTCGGATGATTCCGAGGGTTTTGGAATTTGGGATGAGGAGAAGTTCATCTTCAAGACTCTGAGCGTGAAGTCCAAGCTTCCGTTTGTGAACAGGATTGTTTCGCTGGCGAATTCGCTGCTGTTGTTCGTCCGATACGGCTACTCGCTCATCAGAATGGATAGATTCGTAGAGACTACTGTGAATAGTTTCTTGAAGTATTATGAGAGCTTAAAGACGAGGCCGGTTTTCGAGTCAGTGGATGAGATGCTTAAATGGGCTGGTTTGCACAATCTCACGGCGAGGACTTTGGCTGAGGAGCTGGCTGATTCTGGCTTGTGTCCCTTGTTGATACAAGAGCTTGTCACTGGAAAACTGCTACTGCCCATTTCGACTAGCTCTATGAAGCAGTGGTTGAAGAAATCTTGTATTCCTTTCGTATATATACTCACAGATGTAATATGTATACAAAGGCTATGTTGGTTCCTAATTAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000098 GO:0001101 GO:0001735 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006082 GO:0006508 GO:0006520 GO:0006575 GO:0006629 GO:0006644 GO:0006720 GO:0006721 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009063 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016054 GO:0016491 GO:0016667 GO:0016670 GO:0019538 GO:0019637 GO:0019752 GO:0019941 GO:0023052 GO:0030163 GO:0030327 GO:0030328 GO:0030329 GO:0031090 GO:0032870 GO:0033993 GO:0042219 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044255 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044273 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045338 GO:0046395 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0055114 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0097305 GO:0097306 GO:0098588 GO:0098805 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00900 ko01130 map00900 map01130

Pfam Domains

Protein Families

NAD_binding_8 Prenylcys_lyase

Protein Analysis

207

Amino Acids

23.58

Weight (kDa)

8.31

Isoelectric Point (pI)

28.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Amino_oxidase	PF01593	2 - 55	2e-06	Flavin containing amine oxidoreductase
Prenylcys_lyase	PF07156	80 - 166	2.4e-19	Prenylcysteine lyase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0020578)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0261231
rosa_multiflora	Rmu_sc0000329.1_g000012 Rmu_ssc0000451.1_g000003
rosa_roxburghii	Rroxscaffold_4G00313240
rosa_samantha	Rh2AG660600 Rh2BG671400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	74
AccI	GTMKAC	1 cut(s)	592
AcsI	RAATTY	2 cut(s)	174, 259
AcyI	GRCGYC	2 cut(s)	18, 75
AgsI	TTSAA	3 cut(s)	202, 343, 544
AluBI	AGCT	5 cut(s)	226, 357, 448, 487, 525
AluI	AGCT	5 cut(s)	226, 357, 448, 487, 525
Alw26I	GTCTC	2 cut(s)	55, 314
AoxI	GGCC	2 cut(s)	69, 368
ApeKI	GCWGC	2 cut(s)	124, 265
ApoI	RAATTY	2 cut(s)	174, 259
AseI	ATTAAT	1 cut(s)	618
Asp700I	GAANNNNTTC	1 cut(s)	335
AspLEI	GCGC	1 cut(s)	77
AsuHPI	GGTGA	1 cut(s)	127
BanI	GGYRCC	1 cut(s)	74
BbvCI	CCTCAGC	1 cut(s)	441
BbvI	GCAGC	2 cut(s)	111, 252
BceAI	ACGGC	4 cut(s)	31, 92, 301, 441
BcgI	CGANNNNNNTGC	2 cut(s)	247, 281
BcoDI	GTCTC	2 cut(s)	55, 314
BfaI	CTAG	2 cut(s)	120, 522
BfoI	RGCGCY	1 cut(s)	78
BisI	GCNGC	2 cut(s)	125, 266
BlsI	GCNGC	2 cut(s)	126, 267
BmiI	GGNNCC	2 cut(s)	76, 611
BmsI	GCATC	1 cut(s)	384
Bpu10I	CCTNAGC	1 cut(s)	441
BsaHI	GRCGYC	2 cut(s)	18, 75
BsaJI	CCNNGG	1 cut(s)	162
Bse118I	RCCGGY	2 cut(s)	71, 370
Bse1I	ACTGG	1 cut(s)	499
BseDI	CCNNGG	1 cut(s)	162
BseGI	GGATG	3 cut(s)	160, 187, 394
BseMII	CTCAG	2 cut(s)	200, 432
BseNI	ACTGG	1 cut(s)	499
BseRI	GAGGAG	2 cut(s)	200, 458
BseXI	GCAGC	2 cut(s)	111, 252
BshFI	GGCC	2 cut(s)	71, 370
BshNI	GGYRCC	1 cut(s)	74
BsiSI	CCGG	3 cut(s)	54, 72, 371
BslFI	GGGAC	2 cut(s)	42, 453
BsmAI	GTCTC	2 cut(s)	55, 314
BsmBI	CGTCTC	1 cut(s)	55
BsmFI	GGGAC	2 cut(s)	42, 453
BsnI	GGCC	2 cut(s)	71, 370
BspANI	GGCC	2 cut(s)	71, 370
BspCNI	CTCAG	2 cut(s)	201, 433
BspLI	GGNNCC	2 cut(s)	76, 611
BspT107I	GGYRCC	1 cut(s)	74
BsrFI	RCCGGY	2 cut(s)	71, 370
BsrI	ACTGG	1 cut(s)	499
BssAI	RCCGGY	2 cut(s)	71, 370
BssECI	CCNNGG	1 cut(s)	162
BssNAI	GTATAC	1 cut(s)	593
BssNI	GRCGYC	2 cut(s)	18, 75
Bst1107I	GTATAC	1 cut(s)	593
Bst4CI	ACNGT	4 cut(s)	43, 139, 146, 328
BstACI	GRCGYC	2 cut(s)	18, 75
BstC8I	GCNNGC	3 cut(s)	73, 255, 450
BstDEI	CTNAG	2 cut(s)	209, 441
BstF5I	GGATG	3 cut(s)	160, 187, 394
BstH2I	RGCGCY	1 cut(s)	78
BstHHI	GCGC	1 cut(s)	77
BstMAI	GTCTC	2 cut(s)	55, 314
BstV1I	GCAGC	2 cut(s)	111, 252
BstZ17I	GTATAC	1 cut(s)	593
BsuRI	GGCC	2 cut(s)	71, 370
BtsCI	GGATG	3 cut(s)	160, 187, 394
BtsI	GCAGTG	1 cut(s)	542
BtsIMutI	CAGTG	3 cut(s)	390, 492, 542
Cac8I	GCNNGC	3 cut(s)	73, 255, 450
CfoI	GCGC	1 cut(s)	77
Cfr10I	RCCGGY	2 cut(s)	71, 370
CseI	GACGC	2 cut(s)	7, 39
CviAII	CATG	1 cut(s)	34
DdeI	CTNAG	2 cut(s)	209, 441
DinI	GGCGCC	1 cut(s)	76
EcoRI	GAATTC	1 cut(s)	259
EgeI	GGCGCC	1 cut(s)	76
EheI	GGCGCC	1 cut(s)	76
Esp3I	CGTCTC	1 cut(s)	55
FaeI	CATG	1 cut(s)	37
FaiI	YATR	9 cut(s)	35, 351, 530, 568, 570, 572, 589, 593, 604
FalI	AAGNNNNNCTT	2 cut(s)	182, 214
FaqI	GGGAC	2 cut(s)	42, 453
FatI	CATG	1 cut(s)	33
FblI	GTMKAC	1 cut(s)	592
Fnu4HI	GCNGC	2 cut(s)	125, 266
FokI	GGATG	3 cut(s)	167, 194, 401
Fsp4HI	GCNGC	2 cut(s)	125, 266
FspBI	CTAG	2 cut(s)	120, 522
GlaI	GCGC	1 cut(s)	76
GluI	GCNGC	2 cut(s)	125, 266
HaeII	RGCGCY	1 cut(s)	78
HaeIII	GGCC	2 cut(s)	71, 370
HapII	CCGG	3 cut(s)	54, 72, 371
HgaI	GACGC	2 cut(s)	7, 39
HhaI	GCGC	1 cut(s)	77
Hin1I	GRCGYC	2 cut(s)	18, 75
Hin1II	CATG	1 cut(s)	37
Hin6I	GCGC	1 cut(s)	75
HinP1I	GCGC	1 cut(s)	75
HincII	GTYRAC	3 cut(s)	46, 112, 142
HindII	GTYRAC	3 cut(s)	46, 112, 142
HindIII	AAGCTT	1 cut(s)	224
HinfI	GANTC	6 cut(s)	82, 158, 205, 312, 380, 455
HpaII	CCGG	3 cut(s)	54, 72, 371
HphI	GGTGA	1 cut(s)	127
Hpy166II	GTNNAC	5 cut(s)	46, 112, 142, 238, 593
Hpy188I	TCNGA	5 cut(s)	154, 163, 210, 281, 302
Hpy188III	TCNNGA	2 cut(s)	202, 340
Hpy8I	GTNNAC	5 cut(s)	46, 112, 142, 238, 593
Hpy99I	CGWCG	3 cut(s)	23, 26, 154
HpyCH4III	ACNGT	4 cut(s)	43, 139, 146, 328
HpyCH4IV	ACGT	1 cut(s)	48
HpyCH4V	TGCA	1 cut(s)	415
HpyF3I	CTNAG	2 cut(s)	209, 441
HpySE526I	ACGT	1 cut(s)	48
Hsp92I	GRCGYC	2 cut(s)	18, 75
Hsp92II	CATG	1 cut(s)	37
HspAI	GCGC	1 cut(s)	75
KasI	GGCGCC	1 cut(s)	74
KroI	GCCGGC	1 cut(s)	71
KroNI	GCCGGC	1 cut(s)	73
LmnI	GCTCC	1 cut(s)	445
LpnPI	CCDG	9 cut(s)	67, 85, 226, 239, 384, 393, 434, 444, 480
Lsp1109I	GCAGC	2 cut(s)	111, 252
LweI	GCATC	1 cut(s)	384
MaeI	CTAG	2 cut(s)	120, 522
MaeII	ACGT	1 cut(s)	48
MaeIII	GTNAC	1 cut(s)	490
MboII	GAAGA	3 cut(s)	55, 190, 556
MluCI	AATT	4 cut(s)	174, 259, 615, 619
Mly113I	GGCGCC	1 cut(s)	75
MlyI	GAGTC	2 cut(s)	199, 389
MmeI	TCCRAC	1 cut(s)	132
MnlI	CCTC	8 cut(s)	61, 88, 143, 157, 178, 360, 423, 436
MroNI	GCCGGC	1 cut(s)	71
MroXI	GAANNNNTTC	1 cut(s)	335
MseI	TTAA	3 cut(s)	359, 399, 618
MslI	CAYNNNNRTG	1 cut(s)	302
MspI	CCGG	3 cut(s)	54, 72, 371
NaeI	GCCGGC	1 cut(s)	73
NarI	GGCGCC	1 cut(s)	75
NgoMIV	GCCGGC	1 cut(s)	71
NlaIII	CATG	1 cut(s)	37
NlaIV	GGNNCC	2 cut(s)	76, 611
NmuCI	GTSAC	1 cut(s)	490
PcsI	WCGNNNNNNNCGW	1 cut(s)	54
PdiI	GCCGGC	1 cut(s)	73
PdmI	GAANNNNTTC	1 cut(s)	335
PfeI	GAWTC	4 cut(s)	82, 158, 312, 455
PkrI	GCNGC	2 cut(s)	126, 267
PleI	GAGTC	2 cut(s)	199, 388
PluTI	GGCGCC	1 cut(s)	78
PpsI	GAGTC	2 cut(s)	199, 388
PshBI	ATTAAT	1 cut(s)	618
PspN4I	GGNNCC	2 cut(s)	76, 611
RseI	CAYNNNNRTG	1 cut(s)	302
SaqAI	TTAA	3 cut(s)	359, 399, 618
SatI	GCNGC	2 cut(s)	125, 266
SchI	GAGTC	2 cut(s)	199, 389
SetI	ASST	7 cut(s)	51, 135, 228, 359, 450, 489, 527
SfaNI	GCATC	1 cut(s)	384
SfoI	GGCGCC	1 cut(s)	76
SmiMI	CAYNNNNRTG	1 cut(s)	302
Sse9I	AATT	4 cut(s)	174, 259, 615, 619
SspDI	GGCGCC	1 cut(s)	74
SspMI	CTAG	2 cut(s)	120, 522
TaaI	ACNGT	4 cut(s)	43, 139, 146, 328
TaiI	ACGT	1 cut(s)	51
TaqI	TCGA	5 cut(s)	6, 66, 80, 378, 518
TasI	AATT	4 cut(s)	174, 259, 615, 619
TfiI	GAWTC	4 cut(s)	82, 158, 312, 455
Tru1I	TTAA	3 cut(s)	359, 399, 618
Tru9I	TTAA	3 cut(s)	359, 399, 618
TscAI	CASTG	3 cut(s)	390, 499, 542
TseFI	GTSAC	1 cut(s)	490
TseI	GCWGC	2 cut(s)	124, 265
Tsp45I	GTSAC	1 cut(s)	490
TspDTI	ATGAA	2 cut(s)	184, 545
TspGWI	ACGGA	2 cut(s)	138, 219
TspRI	CASTG	3 cut(s)	390, 499, 542
VspI	ATTAAT	1 cut(s)	618
XapI	RAATTY	2 cut(s)	174, 259
XmiI	GTMKAC	1 cut(s)	592
XmnI	GAANNNNTTC	1 cut(s)	335
XspI	CTAG	2 cut(s)	120, 522

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.