Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0020578

Physical Location & Seq

Genomic Coordinates Forward (+)

87623642 .. 87626615

Gene Structure 2974 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG660600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGTTCGAGCGAAACGGCGTCGTCGGGGGACGCATGGCCACTGTCAACGTCTCCGGCGAGTTCTTCGAGGCCGGCGCCTCGATTCTCCACCCCAAGAACTTCTACGCCGTCAACTACACCAGGCTGCTGAACCTCACCGTCAACAGTCCGTCGGATGATTCCGAGGGTTTTGGAATTTGGGATGGGGAGAAGTTCATCTTCAAGACTCTGAGCGTGAAGTCCAAGCTTCCGTTTGTGAACAGGATTGTTTCGCTGGCGAATTCGCTGCTGCTGTTCGTCCGATACGGCTACTCGCTCGTCAGAATGGATAGATTCGTAGAGGTACTTCTACTTGTGCCTAGCGTGTTTCGGATGTGTGATTTGGTTTTTCTGGTGCAGACTACTGTGAATAGTTTCTTGAAGTATTATGAGAGCTTAAAGACGAGGCCGGTTTTTGAGTCGGTGGATGAGATGCTTAAATGGGCTGGTTTGCACAATCTCACGGCGAGGACTTTGGCTGAGGAGCTGGCTGAATCTGGCTTGTGTCCCTTGTTGATACAAGAGCTTGTCACTCTTAGACAAAGCCTCAAGGAGGTGAAGTGGTTGCTGGAGAAGGCAAAACCGTTGGCTTCTAGTCTTCTAATTCTCAATCAAGGGAAAACTGCTACTGCCCATTTCGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000098 GO:0001101 GO:0001735 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006082 GO:0006508 GO:0006520 GO:0006575 GO:0006629 GO:0006644 GO:0006720 GO:0006721 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009063 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016054 GO:0016491 GO:0016667 GO:0016670 GO:0019538 GO:0019637 GO:0019752 GO:0019941 GO:0023052 GO:0030163 GO:0030327 GO:0030328 GO:0030329 GO:0031090 GO:0032870 GO:0033993 GO:0042219 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044255 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044273 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045338 GO:0046395 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0055114 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0097305 GO:0097306 GO:0098588 GO:0098805 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00900 ko01130 map00900 map01130

Pfam Domains

Protein Families

NAD_binding_8 Prenylcys_lyase

Protein Analysis

220

Amino Acids

24.82

Weight (kDa)

8.49

Isoelectric Point (pI)

27.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Amino_oxidase	PF01593	2 - 54	3e-06	Flavin containing amine oxidoreductase
Prenylcys_lyase	PF07156	123 - 184	1e-10	Prenylcysteine lyase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020578)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0261231
rosa_multiflora	Rmu_sc0000329.1_g000012 Rmu_ssc0000451.1_g000003
rosa_roxburghii	Rroxscaffold_4G00313240
rosa_samantha	Rh2AG660600 Rh2BG671400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	74
AcoI	YGGCCR	1 cut(s)	36
AcsI	RAATTY	2 cut(s)	174, 259
AcyI	GRCGYC	2 cut(s)	18, 75
AfaI	GTAC	1 cut(s)	324
AfiI	CCNNNNNNNGG	1 cut(s)	571
AgsI	TTSAA	2 cut(s)	202, 400
AjnI	CCWGG	1 cut(s)	119
AluBI	AGCT	4 cut(s)	226, 414, 505, 544
AluI	AGCT	4 cut(s)	226, 414, 505, 544
Alw26I	GTCTC	1 cut(s)	55
AoxI	GGCC	3 cut(s)	36, 69, 425
ApeKI	GCWGC	3 cut(s)	124, 265, 268
ApoI	RAATTY	2 cut(s)	174, 259
Asp700I	GAANNNNTTC	1 cut(s)	392
AspLEI	GCGC	1 cut(s)	77
AsuHPI	GGTGA	2 cut(s)	127, 586
BalI	TGGCCA	1 cut(s)	38
BanI	GGYRCC	1 cut(s)	74
BarI	GAAGNNNNNNTAC	2 cut(s)	309, 341
BbsI	GAAGAC	1 cut(s)	608
BbvCI	CCTCAGC	1 cut(s)	498
BbvI	GCAGC	3 cut(s)	111, 252, 255
BccI	CCATC	1 cut(s)	176
BceAI	ACGGC	4 cut(s)	31, 92, 301, 498
BcgI	CGANNNNNNTGC	2 cut(s)	247, 281
BciT130I	CCWGG	1 cut(s)	121
BcoDI	GTCTC	1 cut(s)	55
BfaI	CTAG	3 cut(s)	339, 612, 661
BfoI	RGCGCY	1 cut(s)	78
BisI	GCNGC	3 cut(s)	125, 266, 269
BlsI	GCNGC	3 cut(s)	126, 267, 270
Bme1390I	CCNGG	1 cut(s)	121
BmiI	GGNNCC	1 cut(s)	76
BmrFI	CCNGG	1 cut(s)	121
BmsI	GCATC	1 cut(s)	441
BpiI	GAAGAC	1 cut(s)	608
BpmI	CTGGAG	1 cut(s)	608
Bpu10I	CCTNAGC	1 cut(s)	498
BpuEI	CTTGAG	1 cut(s)	551
BsaHI	GRCGYC	2 cut(s)	18, 75
BsaJI	CCNNGG	1 cut(s)	162
BsaXI	ACNNNNNCTCC	2 cut(s)	563, 593
Bsc4I	CCNNNNNNNGG	1 cut(s)	571
Bse118I	RCCGGY	2 cut(s)	71, 427
BseBI	CCWGG	1 cut(s)	121
BseDI	CCNNGG	1 cut(s)	162
BseGI	GGATG	4 cut(s)	160, 187, 357, 451
BseLI	CCNNNNNNNGG	1 cut(s)	571
BseMII	CTCAG	2 cut(s)	200, 489
BseRI	GAGGAG	1 cut(s)	515
BseXI	GCAGC	3 cut(s)	111, 252, 255
BsgI	GTGCAG	1 cut(s)	395
BshFI	GGCC	3 cut(s)	38, 71, 427
BshNI	GGYRCC	1 cut(s)	74
BsiSI	CCGG	3 cut(s)	54, 72, 428
BslFI	GGGAC	2 cut(s)	42, 510
BslI	CCNNNNNNNGG	1 cut(s)	571
BsmAI	GTCTC	1 cut(s)	55
BsmBI	CGTCTC	1 cut(s)	55
BsmFI	GGGAC	2 cut(s)	42, 510
BsnI	GGCC	3 cut(s)	38, 71, 427
BspANI	GGCC	3 cut(s)	38, 71, 427
BspCNI	CTCAG	2 cut(s)	201, 490
BspLI	GGNNCC	1 cut(s)	76
BspT107I	GGYRCC	1 cut(s)	74
BsrFI	RCCGGY	2 cut(s)	71, 427
BssAI	RCCGGY	2 cut(s)	71, 427
BssECI	CCNNGG	1 cut(s)	162
BssNI	GRCGYC	2 cut(s)	18, 75
Bst2UI	CCWGG	1 cut(s)	121
Bst4CI	ACNGT	5 cut(s)	43, 139, 146, 385, 603
BstACI	GRCGYC	2 cut(s)	18, 75
BstC8I	GCNNGC	3 cut(s)	73, 255, 507
BstDEI	CTNAG	3 cut(s)	209, 498, 554
BstENI	CCTNNNNNAGG	1 cut(s)	569
BstF5I	GGATG	4 cut(s)	160, 187, 357, 451
BstH2I	RGCGCY	1 cut(s)	78
BstHHI	GCGC	1 cut(s)	77
BstMAI	GTCTC	1 cut(s)	55
BstNI	CCWGG	1 cut(s)	121
BstSCI	CCNGG	1 cut(s)	119
BstV1I	GCAGC	3 cut(s)	111, 252, 255
BstV2I	GAAGAC	1 cut(s)	608
BsuRI	GGCC	3 cut(s)	38, 71, 427
BtsCI	GGATG	4 cut(s)	160, 187, 357, 451
BtsIMutI	CAGTG	1 cut(s)	39
Cac8I	GCNNGC	3 cut(s)	73, 255, 507
CfoI	GCGC	1 cut(s)	77
Cfr10I	RCCGGY	2 cut(s)	71, 427
CseI	GACGC	2 cut(s)	7, 39
Csp6I	GTAC	1 cut(s)	323
CviAII	CATG	1 cut(s)	34
CviQI	GTAC	1 cut(s)	323
DdeI	CTNAG	3 cut(s)	209, 498, 554
DinI	GGCGCC	1 cut(s)	76
EaeI	YGGCCR	1 cut(s)	36
EcoNI	CCTNNNNNAGG	1 cut(s)	569
EcoRI	GAATTC	1 cut(s)	259
EcoRII	CCWGG	1 cut(s)	119
EgeI	GGCGCC	1 cut(s)	76
EheI	GGCGCC	1 cut(s)	76
Esp3I	CGTCTC	1 cut(s)	55
FaeI	CATG	1 cut(s)	37
FaiI	YATR	2 cut(s)	35, 408
FalI	AAGNNNNNCTT	2 cut(s)	182, 214
FaqI	GGGAC	2 cut(s)	42, 510
FatI	CATG	1 cut(s)	33
Fnu4HI	GCNGC	3 cut(s)	125, 266, 269
FokI	GGATG	4 cut(s)	167, 194, 364, 458
Fsp4HI	GCNGC	3 cut(s)	125, 266, 269
FspBI	CTAG	3 cut(s)	339, 612, 661
GlaI	GCGC	1 cut(s)	76
GluI	GCNGC	3 cut(s)	125, 266, 269
GsuI	CTGGAG	1 cut(s)	608
HaeII	RGCGCY	1 cut(s)	78
HaeIII	GGCC	3 cut(s)	38, 71, 427
HapII	CCGG	3 cut(s)	54, 72, 428
HgaI	GACGC	2 cut(s)	7, 39
HhaI	GCGC	1 cut(s)	77
Hin1I	GRCGYC	2 cut(s)	18, 75
Hin1II	CATG	1 cut(s)	37
Hin6I	GCGC	1 cut(s)	75
HinP1I	GCGC	1 cut(s)	75
HincII	GTYRAC	3 cut(s)	46, 112, 142
HindII	GTYRAC	3 cut(s)	46, 112, 142
HindIII	AAGCTT	1 cut(s)	224
HinfI	GANTC	6 cut(s)	82, 158, 205, 312, 437, 512
HpaII	CCGG	3 cut(s)	54, 72, 428
HphI	GGTGA	2 cut(s)	127, 586
Hpy166II	GTNNAC	4 cut(s)	46, 112, 142, 238
Hpy188I	TCNGA	6 cut(s)	154, 163, 210, 281, 302, 351
Hpy188III	TCNNGA	2 cut(s)	202, 397
Hpy8I	GTNNAC	4 cut(s)	46, 112, 142, 238
Hpy99I	CGWCG	3 cut(s)	23, 26, 154
HpyAV	CCTTC	1 cut(s)	586
HpyCH4III	ACNGT	5 cut(s)	43, 139, 146, 385, 603
HpyCH4IV	ACGT	1 cut(s)	48
HpyCH4V	TGCA	2 cut(s)	376, 472
HpyF3I	CTNAG	3 cut(s)	209, 498, 554
HpySE526I	ACGT	1 cut(s)	48
Hsp92I	GRCGYC	2 cut(s)	18, 75
Hsp92II	CATG	1 cut(s)	37
HspAI	GCGC	1 cut(s)	75
KasI	GGCGCC	1 cut(s)	74
KroI	GCCGGC	1 cut(s)	71
KroNI	GCCGGC	1 cut(s)	73
LmnI	GCTCC	1 cut(s)	502
Lsp1109I	GCAGC	3 cut(s)	111, 252, 255
LweI	GCATC	1 cut(s)	441
MaeI	CTAG	3 cut(s)	339, 612, 661
MaeII	ACGT	1 cut(s)	48
MaeIII	GTNAC	1 cut(s)	547
MboII	GAAGA	3 cut(s)	55, 190, 608
MlsI	TGGCCA	1 cut(s)	38
MluCI	AATT	3 cut(s)	174, 259, 621
MluNI	TGGCCA	1 cut(s)	38
Mly113I	GGCGCC	1 cut(s)	75
MlyI	GAGTC	2 cut(s)	199, 446
MmeI	TCCRAC	1 cut(s)	132
Mox20I	TGGCCA	1 cut(s)	38
MroNI	GCCGGC	1 cut(s)	71
MroXI	GAANNNNTTC	1 cut(s)	392
MscI	TGGCCA	1 cut(s)	38
MseI	TTAA	2 cut(s)	416, 456
Msp20I	TGGCCA	1 cut(s)	38
MspI	CCGG	3 cut(s)	54, 72, 428
MspR9I	CCNGG	1 cut(s)	121
MvaI	CCWGG	1 cut(s)	121
NaeI	GCCGGC	1 cut(s)	73
NarI	GGCGCC	1 cut(s)	75
NgoMIV	GCCGGC	1 cut(s)	71
NlaIII	CATG	1 cut(s)	37
NlaIV	GGNNCC	1 cut(s)	76
NmuCI	GTSAC	1 cut(s)	547
PcsI	WCGNNNNNNNCGW	1 cut(s)	54
PdiI	GCCGGC	1 cut(s)	73
PdmI	GAANNNNTTC	1 cut(s)	392
PfeI	GAWTC	4 cut(s)	82, 158, 312, 512
PkrI	GCNGC	3 cut(s)	126, 267, 270
PleI	GAGTC	2 cut(s)	199, 445
PluTI	GGCGCC	1 cut(s)	78
PpsI	GAGTC	2 cut(s)	199, 445
Psp6I	CCWGG	1 cut(s)	119
PspGI	CCWGG	1 cut(s)	119
PspN4I	GGNNCC	1 cut(s)	76
RsaI	GTAC	1 cut(s)	324
RsaNI	GTAC	1 cut(s)	323
SaqAI	TTAA	2 cut(s)	416, 456
SatI	GCNGC	3 cut(s)	125, 266, 269
SchI	GAGTC	2 cut(s)	199, 446
ScrFI	CCNGG	1 cut(s)	121
SetI	ASST	8 cut(s)	51, 135, 228, 324, 416, 507, 546, 576
SfaNI	GCATC	1 cut(s)	441
SfoI	GGCGCC	1 cut(s)	76
SmlI	CTYRAG	1 cut(s)	566
SmoI	CTYRAG	1 cut(s)	566
Sse9I	AATT	3 cut(s)	174, 259, 621
SspDI	GGCGCC	1 cut(s)	74
SspMI	CTAG	3 cut(s)	339, 612, 661
StyD4I	CCNGG	1 cut(s)	119
TaaI	ACNGT	5 cut(s)	43, 139, 146, 385, 603
TaiI	ACGT	1 cut(s)	51
TaqI	TCGA	4 cut(s)	6, 66, 80, 657
TasI	AATT	3 cut(s)	174, 259, 621
TfiI	GAWTC	4 cut(s)	82, 158, 312, 512
Tru1I	TTAA	2 cut(s)	416, 456
Tru9I	TTAA	2 cut(s)	416, 456
TscAI	CASTG	1 cut(s)	46
TseFI	GTSAC	1 cut(s)	547
TseI	GCWGC	3 cut(s)	124, 265, 268
Tsp45I	GTSAC	1 cut(s)	547
TspDTI	ATGAA	1 cut(s)	184
TspGWI	ACGGA	2 cut(s)	138, 219
TspRI	CASTG	1 cut(s)	46
XagI	CCTNNNNNAGG	1 cut(s)	569
XapI	RAATTY	2 cut(s)	174, 259
XmnI	GAANNNNTTC	1 cut(s)	392
XspI	CTAG	3 cut(s)	339, 612, 661

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.