Rmu_ssc0000451.1_g000003

Farnesylcysteine

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000451.1
Physical Location & Seq
Reverse (-)
14130 .. 14526
397 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000451.1_g000003.1.cds

Sequence Viewer

Length: 321 bp
ctgagcgtgaagtccaagcttccgtttgtgaacaggattgtttcgctggcgaattcgctgctgctgttcgtccgatacggctactcgctcgtcagaatggatagattcgtagagactactgtgaatagtttcttgaagtattatgagagcttaaagacgaggccggttttcgagtcggtggatgagatgcttaaatgggctggtttgcacaatctcatggcgaggactttggctgaggagctggctgattctggcttgtgtcccttgttgatacaagagcttgtcactgtaagaacttttctccacacaagaattttttaa

Protein Analysis

106

Amino Acids

12.27

Weight (kDa)

9.25

Isoelectric Point (pI)

21.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020578)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0261231
rosa_multiflora Rmu_sc0000329.1_g000012 Rmu_ssc0000451.1_g000003
rosa_roxburghii Rroxscaffold_4G00313240
rosa_samantha Rh2AG660600 Rh2BG671400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 52, 312
AgsI TTSAA 1 cut(s) 136
AluBI AGCT 4 cut(s) 19, 150, 241, 280
AluI AGCT 4 cut(s) 19, 150, 241, 280
Alw26I GTCTC 1 cut(s) 107
AoxI GGCC 1 cut(s) 161
ApeKI GCWGC 2 cut(s) 58, 61
ApoI RAATTY 2 cut(s) 52, 312
Asp700I GAANNNNTTC 1 cut(s) 128
BbvCI CCTCAGC 1 cut(s) 234
BbvI GCAGC 2 cut(s) 45, 48
BceAI ACGGC 1 cut(s) 94
BcgI CGANNNNNNTGC 2 cut(s) 40, 74
BcoDI GTCTC 1 cut(s) 107
BisI GCNGC 2 cut(s) 59, 62
BlsI GCNGC 2 cut(s) 60, 63
BmsI GCATC 1 cut(s) 177
Bpu10I CCTNAGC 1 cut(s) 234
Bse118I RCCGGY 1 cut(s) 163
BseGI GGATG 1 cut(s) 187
BseMII CTCAG 1 cut(s) 225
BseRI GAGGAG 1 cut(s) 251
BseXI GCAGC 2 cut(s) 45, 48
BshFI GGCC 1 cut(s) 163
BsiSI CCGG 1 cut(s) 164
BslFI GGGAC 1 cut(s) 246
BsmAI GTCTC 1 cut(s) 107
BsmFI GGGAC 1 cut(s) 246
BsnI GGCC 1 cut(s) 163
BspANI GGCC 1 cut(s) 163
BspCNI CTCAG 1 cut(s) 226
BsrFI RCCGGY 1 cut(s) 163
BssAI RCCGGY 1 cut(s) 163
Bst4CI ACNGT 2 cut(s) 121, 289
BstC8I GCNNGC 2 cut(s) 48, 243
BstDEI CTNAG 2 cut(s) 2, 234
BstF5I GGATG 1 cut(s) 187
BstMAI GTCTC 1 cut(s) 107
BstV1I GCAGC 2 cut(s) 45, 48
BsuRI GGCC 1 cut(s) 163
BtsCI GGATG 1 cut(s) 187
BtsIMutI CAGTG 1 cut(s) 285
Cac8I GCNNGC 2 cut(s) 48, 243
Cfr10I RCCGGY 1 cut(s) 163
CviAII CATG 1 cut(s) 217
DdeI CTNAG 2 cut(s) 2, 234
EcoRI GAATTC 1 cut(s) 52
FaeI CATG 1 cut(s) 220
FaiI YATR 2 cut(s) 144, 218
FaqI GGGAC 1 cut(s) 246
FatI CATG 1 cut(s) 216
Fnu4HI GCNGC 2 cut(s) 59, 62
FokI GGATG 1 cut(s) 194
Fsp4HI GCNGC 2 cut(s) 59, 62
GluI GCNGC 2 cut(s) 59, 62
HaeIII GGCC 1 cut(s) 163
HapII CCGG 1 cut(s) 164
Hin1II CATG 1 cut(s) 220
HindIII AAGCTT 1 cut(s) 17
HinfI GANTC 3 cut(s) 105, 173, 248
HpaII CCGG 1 cut(s) 164
Hpy166II GTNNAC 1 cut(s) 31
Hpy188I TCNGA 2 cut(s) 74, 95
Hpy188III TCNNGA 1 cut(s) 133
Hpy8I GTNNAC 1 cut(s) 31
HpyCH4III ACNGT 2 cut(s) 121, 289
HpyCH4V TGCA 1 cut(s) 208
HpyF3I CTNAG 2 cut(s) 2, 234
Hsp92II CATG 1 cut(s) 220
LmnI GCTCC 1 cut(s) 238
LpnPI CCDG 6 cut(s) 19, 32, 177, 186, 227, 237
Lsp1109I GCAGC 2 cut(s) 45, 48
LweI GCATC 1 cut(s) 177
MaeIII GTNAC 1 cut(s) 283
MluCI AATT 2 cut(s) 52, 312
MlyI GAGTC 1 cut(s) 182
MnlI CCTC 3 cut(s) 153, 216, 229
MroXI GAANNNNTTC 1 cut(s) 128
MseI TTAA 3 cut(s) 152, 192, 319
MspI CCGG 1 cut(s) 164
NlaIII CATG 1 cut(s) 220
NmuCI GTSAC 1 cut(s) 283
PdmI GAANNNNTTC 1 cut(s) 128
PfeI GAWTC 2 cut(s) 105, 248
PkrI GCNGC 2 cut(s) 60, 63
PleI GAGTC 1 cut(s) 181
PpsI GAGTC 1 cut(s) 181
SaqAI TTAA 3 cut(s) 152, 192, 319
SatI GCNGC 2 cut(s) 59, 62
SchI GAGTC 1 cut(s) 182
SetI ASST 4 cut(s) 21, 152, 243, 282
SfaNI GCATC 1 cut(s) 177
Sse9I AATT 2 cut(s) 52, 312
TaaI ACNGT 2 cut(s) 121, 289
TaqI TCGA 1 cut(s) 171
TasI AATT 2 cut(s) 52, 312
TfiI GAWTC 2 cut(s) 105, 248
Tru1I TTAA 3 cut(s) 152, 192, 319
Tru9I TTAA 3 cut(s) 152, 192, 319
TscAI CASTG 1 cut(s) 292
TseFI GTSAC 1 cut(s) 283
TseI GCWGC 2 cut(s) 58, 61
Tsp45I GTSAC 1 cut(s) 283
TspGWI ACGGA 1 cut(s) 12
TspRI CASTG 1 cut(s) 292
XapI RAATTY 2 cut(s) 52, 312
XmnI GAANNNNTTC 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.