Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000375.1

Orthogroup ID

OG0018138

Physical Location & Seq

Genomic Coordinates Forward (+)

43725 .. 48427

Gene Structure 4703 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

atggcaggaggagccgaaaaattccagaacccgccggaaaaagcttttagcttctattctctctcctcgctccgcatatggatgatccgtgaccagagagaggtaggggatgacgagacaatccaaatgcgattagtgcgccgccgtgaagtggctagatggcggagttccagtcggatctacttcacgggtcgtcgggtcgttgatctaggtcgaacagtcttgaaggttctggctcgatctggggcctcctcacttctattctttcttcctcgatataccgacccaaatcttctactccgatttactcttctccttgaaaccctaattcatcggttgttcttagtctccagcgagaaattagggttcgaattggggctcgctcttcacttctccaaacccgcctgcaattctatctacccaatcgataatcgaagatctgctttgcagaagaattgcaagggtaaagaggaggctgaagttgaaaatgaggctaaagaggagctcgaagaagagaaagagaatctgccggaagtttcaacaactctagccctctcagcgtcttcagcccaagaccaagcatgtgtctgccttgctccttctcctactgggaatctccacgttggtggagccagaactgccctcttcaattacctctttgccaggtccaatggagggaagtttgtttttagaattgaagacatggatttggaaaggtctactaaggagtccaaggaggctgtgttgcaggatctctcttggcttggtcttgattgggatgaagggcctggtgtgaatggagattatgggccatatcggcaattagaaagaaattctttgtataagcaatatgctgagaagcttttagagtgtggttatgtttattgcagcttttgctctagtgacgtaatttttgttacctctactcttatggcacgtttacttacttgcaatggaaaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006424 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0006996 GO:0007005 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009791 GO:0009908 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0019538 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0034660 GO:0035670 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0071704 GO:0071840 GO:0090304 GO:0090567 GO:0099402 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko00970 ko01100 ko01110 ko01120 map00860 map00970 map01100 map01110 map01120

Pfam Domains

Protein Families

tRNA-synt_1c

Protein Analysis

320

Amino Acids

36.22

Weight (kDa)

6.85

Isoelectric Point (pI)

50.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_1c	PF00749	198 - 302	1.2e-34	tRNA synthetases class I (E and Q), catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018138)

Species	Orthologous Gene IDs
pyrus_communis	pycom10g00740
rosa_chinensis	RchiOBHm_Chr3g0490481
rosa_laevigata	RLG00000022888
rosa_multiflora	Rmu_sc0000375.1_g000009
rosa_roxburghii	Rroxscaffold_5G00358670
rosa_samantha	Rh1AG237900 Rh3AG293100 Rh3CG327200 Rh4AG027400 Rh5AG387000
rosa_wichuraiana	Rw5G036410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	719
AciI	CCGC	5 cut(s)	32, 73, 142, 163, 402
AclWI	GGATC	3 cut(s)	79, 185, 759
AcsI	RAATTY	2 cut(s)	20, 832
AcuI	CTGAAG	2 cut(s)	498, 549
AfiI	CCNNNNNNNGG	3 cut(s)	100, 151, 675
AgsI	TTSAA	6 cut(s)	226, 320, 485, 540, 649, 698
AjnI	CCWGG	2 cut(s)	662, 787
AleI	CACNNNNGTG	1 cut(s)	624
AluBI	AGCT	5 cut(s)	44, 51, 505, 862, 891
AluI	AGCT	5 cut(s)	44, 51, 505, 862, 891
Alw21I	GWGCWC	1 cut(s)	507
Alw26I	GTCTC	2 cut(s)	110, 352
AlwI	GGATC	3 cut(s)	79, 185, 759
AoxI	GGCC	3 cut(s)	246, 785, 809
ApeKI	GCWGC	1 cut(s)	888
ApoI	RAATTY	2 cut(s)	20, 832
ArsI	GACNNNNNNTTYG	2 cut(s)	896, 928
AspLEI	GCGC	1 cut(s)	141
AspS9I	GGNCC	4 cut(s)	246, 666, 785, 809
AsuII	TTCGAA	1 cut(s)	369
AvaII	GGWCC	1 cut(s)	666
BanII	GRGCYC	2 cut(s)	381, 507
BbsI	GAAGAC	2 cut(s)	555, 705
Bbv12I	GWGCWC	1 cut(s)	507
BbvI	GCAGC	1 cut(s)	900
BccI	CCATC	1 cut(s)	153
BceAI	ACGGC	1 cut(s)	129
BciT130I	CCWGG	2 cut(s)	664, 789
BcoDI	GTCTC	2 cut(s)	110, 352
BfaI	CTAG	4 cut(s)	156, 209, 548, 900
BglI	GCCNNNNNGGC	1 cut(s)	817
BglII	AGATCT	1 cut(s)	437
BisI	GCNGC	2 cut(s)	142, 889
BlsI	GCNGC	2 cut(s)	143, 890
Bme1390I	CCNGG	2 cut(s)	664, 789
Bme18I	GGWCC	1 cut(s)	666
BmgT120I	GGNCC	4 cut(s)	246, 666, 785, 809
BmiI	GGNNCC	3 cut(s)	13, 247, 631
BmrFI	CCNGG	2 cut(s)	664, 789
BmrI	ACTGGG	1 cut(s)	618
BmuI	ACTGGG	1 cut(s)	618
BpiI	GAAGAC	2 cut(s)	555, 705
BpmI	CTGGAG	1 cut(s)	334
Bpu14I	TTCGAA	1 cut(s)	369
Bsa29I	ATCGAT	1 cut(s)	426
BsaJI	CCNNGG	1 cut(s)	732
BsaXI	ACNNNNNCTCC	4 cut(s)	157, 187, 728, 758
Bsc4I	CCNNNNNNNGG	3 cut(s)	100, 151, 675
Bse1I	ACTGG	2 cut(s)	171, 613
Bse3DI	GCAATG	1 cut(s)	958
BseBI	CCWGG	2 cut(s)	664, 789
BseCI	ATCGAT	1 cut(s)	426
BseDI	CCNNGG	1 cut(s)	732
BseGI	GGATG	3 cut(s)	87, 115, 784
BseLI	CCNNNNNNNGG	3 cut(s)	100, 151, 675
BseMI	GCAATG	1 cut(s)	958
BseMII	CTCAG	2 cut(s)	570, 846
BseNI	ACTGG	2 cut(s)	171, 613
BseRI	GAGGAG	5 cut(s)	24, 55, 241, 485, 515
BseXI	GCAGC	1 cut(s)	900
BshFI	GGCC	3 cut(s)	248, 787, 811
BshVI	ATCGAT	1 cut(s)	426
BsiHKAI	GWGCWC	1 cut(s)	507
BsiSI	CCGG	2 cut(s)	35, 530
BslI	CCNNNNNNNGG	3 cut(s)	100, 151, 675
BsmAI	GTCTC	2 cut(s)	110, 352
BsnI	GGCC	3 cut(s)	248, 787, 811
Bsp119I	TTCGAA	1 cut(s)	369
Bsp1286I	GDGCHC	2 cut(s)	381, 507
Bsp143I	GATC	6 cut(s)	84, 177, 205, 239, 437, 751
BspACI	CCGC	5 cut(s)	32, 73, 142, 163, 402
BspANI	GGCC	3 cut(s)	248, 787, 811
BspCNI	CTCAG	2 cut(s)	569, 847
BspDI	ATCGAT	1 cut(s)	426
BspLI	GGNNCC	3 cut(s)	13, 247, 631
BspPI	GGATC	3 cut(s)	79, 185, 759
BspQI	GCTCTTC	1 cut(s)	390
BspT104I	TTCGAA	1 cut(s)	369
BsrDI	GCAATG	1 cut(s)	958
BsrI	ACTGG	2 cut(s)	171, 613
BssECI	CCNNGG	1 cut(s)	732
BssMI	GATC	6 cut(s)	84, 177, 205, 239, 437, 751
BssT1I	CCWWGG	1 cut(s)	732
Bst2UI	CCWGG	2 cut(s)	664, 789
Bst4CI	ACNGT	1 cut(s)	220
Bst6I	CTCTTC	4 cut(s)	315, 390, 507, 650
BstAPI	GCANNNNNTGC	1 cut(s)	894
BstBI	TTCGAA	1 cut(s)	369
BstC8I	GCNNGC	2 cut(s)	381, 406
BstDEI	CTNAG	4 cut(s)	343, 556, 723, 855
BstF5I	GGATG	3 cut(s)	87, 115, 784
BstHHI	GCGC	1 cut(s)	141
BstKTI	GATC	6 cut(s)	87, 180, 208, 242, 440, 754
BstMAI	GTCTC	2 cut(s)	110, 352
BstMBI	GATC	6 cut(s)	84, 177, 205, 239, 437, 751
BstMWI	GCNNNNNNNGC	7 cut(s)	11, 136, 557, 566, 638, 817, 894
BstNI	CCWGG	2 cut(s)	664, 789
BstNSI	RCATGY	1 cut(s)	585
BstSCI	CCNGG	2 cut(s)	662, 787
BstV1I	GCAGC	1 cut(s)	900
BstV2I	GAAGAC	2 cut(s)	555, 705
BstX2I	RGATCY	3 cut(s)	177, 437, 751
BstXI	CCANNNNNNTGG	1 cut(s)	626
BstYI	RGATCY	3 cut(s)	177, 437, 751
Bsu15I	ATCGAT	1 cut(s)	426
BsuRI	GGCC	3 cut(s)	248, 787, 811
BsuTUI	ATCGAT	1 cut(s)	426
BtsCI	GGATG	3 cut(s)	87, 115, 784
Cac8I	GCNNGC	2 cut(s)	381, 406
CfoI	GCGC	1 cut(s)	141
Cfr13I	GGNCC	4 cut(s)	246, 666, 785, 809
ClaI	ATCGAT	1 cut(s)	426
CseI	GACGC	1 cut(s)	549
CviAII	CATG	2 cut(s)	582, 703
DdeI	CTNAG	4 cut(s)	343, 556, 723, 855
DpnI	GATC	6 cut(s)	86, 179, 207, 241, 439, 753
DpnII	GATC	6 cut(s)	84, 177, 205, 239, 437, 751
Eam1104I	CTCTTC	4 cut(s)	315, 390, 507, 650
EarI	CTCTTC	4 cut(s)	315, 390, 507, 650
EciI	GGCGGA	1 cut(s)	178
Ecl136II	GAGCTC	1 cut(s)	505
Eco130I	CCWWGG	1 cut(s)	732
Eco24I	GRGCYC	2 cut(s)	381, 507
Eco47I	GGWCC	1 cut(s)	666
Eco53kI	GAGCTC	1 cut(s)	505
Eco57I	CTGAAG	2 cut(s)	498, 549
EcoICRI	GAGCTC	1 cut(s)	505
EcoO109I	RGGNCCY	2 cut(s)	246, 785
EcoRII	CCWGG	2 cut(s)	662, 787
EcoT14I	CCWWGG	1 cut(s)	732
EcoT38I	GRGCYC	2 cut(s)	381, 507
ErhI	CCWWGG	1 cut(s)	732
FaeI	CATG	2 cut(s)	585, 706
FalI	AAGNNNNNCTT	4 cut(s)	427, 459, 820, 852
FatI	CATG	2 cut(s)	581, 702
FauI	CCCGC	2 cut(s)	39, 409
FauNDI	CATATG	1 cut(s)	77
FblI	GTMKAC	1 cut(s)	719
Fnu4HI	GCNGC	2 cut(s)	142, 889
FokI	GGATG	3 cut(s)	94, 122, 791
FriOI	GRGCYC	2 cut(s)	381, 507
Fsp4HI	GCNGC	2 cut(s)	142, 889
FspBI	CTAG	4 cut(s)	156, 209, 548, 900
GlaI	GCGC	1 cut(s)	140
GluI	GCNGC	2 cut(s)	142, 889
GsuI	CTGGAG	1 cut(s)	334
HaeIII	GGCC	3 cut(s)	248, 787, 811
HapII	CCGG	2 cut(s)	35, 530
HgaI	GACGC	1 cut(s)	549
HhaI	GCGC	1 cut(s)	141
Hin1II	CATG	2 cut(s)	585, 706
Hin6I	GCGC	1 cut(s)	139
HinP1I	GCGC	1 cut(s)	139
HindIII	AAGCTT	2 cut(s)	42, 860
HinfI	GANTC	3 cut(s)	523, 613, 728
HpaII	CCGG	2 cut(s)	35, 530
Hpy166II	GTNNAC	2 cut(s)	720, 941
Hpy188I	TCNGA	2 cut(s)	177, 302
Hpy188III	TCNNGA	3 cut(s)	25, 223, 770
Hpy8I	GTNNAC	2 cut(s)	720, 941
Hpy99I	CGWCG	1 cut(s)	198
HpyAV	CCTTC	3 cut(s)	220, 609, 776
HpyCH4III	ACNGT	1 cut(s)	220
HpyCH4IV	ACGT	3 cut(s)	621, 906, 937
HpyCH4V	TGCA	6 cut(s)	408, 448, 459, 748, 888, 951
HpyF10VI	GCNNNNNNNGC	7 cut(s)	11, 136, 557, 566, 638, 817, 894
HpyF3I	CTNAG	4 cut(s)	343, 556, 723, 855
HpySE526I	ACGT	3 cut(s)	621, 906, 937
Hsp92II	CATG	2 cut(s)	585, 706
HspAI	GCGC	1 cut(s)	139
Kzo9I	GATC	6 cut(s)	84, 177, 205, 239, 437, 751
LguI	GCTCTTC	1 cut(s)	390
LmnI	GCTCC	5 cut(s)	11, 75, 502, 601, 629
Lsp1109I	GCAGC	1 cut(s)	900
MaeI	CTAG	4 cut(s)	156, 209, 548, 900
MaeII	ACGT	3 cut(s)	621, 906, 937
MaeIII	GTNAC	3 cut(s)	89, 902, 916
MalI	GATC	6 cut(s)	86, 179, 207, 241, 439, 753
MboI	GATC	6 cut(s)	84, 177, 205, 239, 437, 751
MflI	RGATCY	3 cut(s)	177, 437, 751
MhlI	GDGCHC	2 cut(s)	381, 507
MlyI	GAGTC	1 cut(s)	737
MmeI	TCCRAC	1 cut(s)	155
MslI	CAYNNNNRTG	2 cut(s)	80, 624
MspI	CCGG	2 cut(s)	35, 530
MspR9I	CCNGG	2 cut(s)	664, 789
MvaI	CCWGG	2 cut(s)	664, 789
MwoI	GCNNNNNNNGC	7 cut(s)	11, 136, 557, 566, 638, 817, 894
NdeI	CATATG	1 cut(s)	77
NdeII	GATC	6 cut(s)	84, 177, 205, 239, 437, 751
NlaIII	CATG	2 cut(s)	585, 706
NlaIV	GGNNCC	3 cut(s)	13, 247, 631
NmuCI	GTSAC	2 cut(s)	89, 902
NspI	RCATGY	1 cut(s)	585
NspV	TTCGAA	1 cut(s)	369
OliI	CACNNNNGTG	1 cut(s)	624
PciSI	GCTCTTC	1 cut(s)	390
PfeI	GAWTC	2 cut(s)	523, 613
PkrI	GCNGC	2 cut(s)	143, 890
PleI	GAGTC	1 cut(s)	736
PpsI	GAGTC	1 cut(s)	736
Psp124BI	GAGCTC	1 cut(s)	507
Psp6I	CCWGG	2 cut(s)	662, 787
PspGI	CCWGG	2 cut(s)	662, 787
PspN4I	GGNNCC	3 cut(s)	13, 247, 631
PspPI	GGNCC	4 cut(s)	246, 666, 785, 809
PsuI	RGATCY	3 cut(s)	177, 437, 751
RseI	CAYNNNNRTG	2 cut(s)	80, 624
SacI	GAGCTC	1 cut(s)	507
SapI	GCTCTTC	1 cut(s)	390
SatI	GCNGC	2 cut(s)	142, 889
Sau3AI	GATC	6 cut(s)	84, 177, 205, 239, 437, 751
Sau96I	GGNCC	4 cut(s)	246, 666, 785, 809
SchI	GAGTC	1 cut(s)	737
ScrFI	CCNGG	2 cut(s)	664, 789
SduI	GDGCHC	2 cut(s)	381, 507
SfuI	TTCGAA	1 cut(s)	369
SinI	GGWCC	1 cut(s)	666
SmiMI	CAYNNNNRTG	2 cut(s)	80, 624
SsiI	CCGC	5 cut(s)	32, 73, 142, 163, 402
SspMI	CTAG	4 cut(s)	156, 209, 548, 900
SstI	GAGCTC	1 cut(s)	507
StyD4I	CCNGG	2 cut(s)	662, 787
StyI	CCWWGG	1 cut(s)	732
TaaI	ACNGT	1 cut(s)	220
TaiI	ACGT	3 cut(s)	624, 909, 940
TaqI	TCGA	7 cut(s)	214, 238, 274, 369, 426, 433, 507
TauI	GCSGC	1 cut(s)	144
TfiI	GAWTC	2 cut(s)	523, 613
TseFI	GTSAC	2 cut(s)	89, 902
TseI	GCWGC	1 cut(s)	888
Tsp45I	GTSAC	2 cut(s)	89, 902
TspDTI	ATGAA	2 cut(s)	320, 795
TspGWI	ACGGA	1 cut(s)	77
VpaK11BI	GGWCC	1 cut(s)	666
XapI	RAATTY	2 cut(s)	20, 832
XceI	RCATGY	1 cut(s)	585
XmiI	GTMKAC	1 cut(s)	719
XspI	CTAG	4 cut(s)	156, 209, 548, 900

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.