Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000394.1

Orthogroup ID

OG0014623

Physical Location & Seq

Genomic Coordinates Reverse (-)

167304 .. 171581

Gene Structure 4278 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1356 bp

atgggttctgaagaagcttgctccagcagacagagtctgatcaaatcaactggctcagagagtgccagcacttccactctgtctcaaaatgtggttggggttctgcatcttgttgtttcacttgggatcattcttgcaatagacaaattcttgaagaaggcatttgtggcagctgcaattaagttcccgagtgcacttttcgggatgttttgtatattctcaattctaatcgctcttgatgccactgttcctgctgtggcaaaaagcttgatgagtttctttcagccggcgctgttgttcattcagagatggctgccattgttttatgtgccatctttggttgttttgccgctttctgttaagagtattcccccggcttccggcatcaagatttgctatattatagctggaggctggctggcttcactagctgttgcaggatatacggcaatagcaatcagaaaattggtaaagacagaaatgacagatgctgagcctatggcaaaaccctctccattttcttcccttgaagcatggtcttggagtgggatcctcctcatctcatttgttggagcattagtaaacccaacagcactggggacaagtgctctgacatgccttccattcctacttgcatccactgtgttaggttacattgttggttctggattgccatcagatgtgaagaagattttccacccaattatttgttgtgccctatctgcagatgtggcagcagtggcttatggatacttttccaagtctgggcttgatcctgtccttgaatcttaccttacaaaggtttcatcaaaccctggagctggtgatattctgatgggattcttggggtctgttatcctctcatttgctttctcaatgttccaacagaggaagctggtcaagaggcatgcagcagagattttcacatctgtaatcgtatcgtgcatattctcattgtattcaaccgctcttattggacgtctcgttgggttagaatcaagtttgactgtctcaattctaccacgatgtataactgtggcattagccctcagcattgtgtctttgttcgaaggtgccaattcatctctcacagctgcagttgttgtagtaactggtttggtgggagctaattttgtacaggcaacacttgataaactacagttccgagatcctattgctcggggaatagctactgcatctagtgctcatggattgggaacagcagcattgtcagccaaggaacccgaggctctcccattttgtgccattgcttatgctttgaatggtatatttggttctttgctctgctcaattccagcagtcaggcaaagcttgcttgccgtgattggatcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006820 GO:0006855 GO:0006996 GO:0008028 GO:0008150 GO:0008152 GO:0008509 GO:0008514 GO:0008643 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009657 GO:0009658 GO:0009706 GO:0009853 GO:0009941 GO:0009987 GO:0015075 GO:0015144 GO:0015238 GO:0015318 GO:0015665 GO:0015711 GO:0015718 GO:0015849 GO:0015850 GO:0015893 GO:0016020 GO:0016043 GO:0019866 GO:0022857 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0034219 GO:0034220 GO:0042170 GO:0042221 GO:0042493 GO:0042873 GO:0042879 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043879 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071840 GO:0097339 GO:0098656 GO:1900866 GO:1901618 GO:1901974 GO:1901975 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LrgB

Protein Analysis

451

Amino Acids

47.03

Weight (kDa)

8.95

Isoelectric Point (pI)

33.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LrgB	PF04172	214 - 437	1.6e-38	LrgB-like family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014623)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32080
fragaria_vesca	FvH4_5g23540 FvH4_5g23540
malus_domestica	MD06G1023600.v1.1
prunus_persica	Prupe.5G024500_v2.0.a1
pyrus_communis	pycom06g01920
rosa_chinensis	RchiOBHm_Chr7g0212851
rosa_laevigata	RLG00000002865
rosa_multiflora	Rmu_sc0000394.1_g000049
rosa_roxburghii	Rroxscaffold_3G00246510
rosa_rugosa	Rorug07G0137000
rosa_samantha	Rh7AG268600 Rh7BG264200 Rh7CG287600 Rh7DG276700
rosa_wichuraiana	Rw7G023210 Rw7G023330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	982
AccB1I	GGYRCC	1 cut(s)	1073
AccBSI	CCGCTC	1 cut(s)	968
AciI	CCGC	2 cut(s)	350, 966
AclWI	GGATC	5 cut(s)	134, 544, 557, 767, 1163
AcsI	RAATTY	1 cut(s)	146
AcuI	CTGAAG	1 cut(s)	30
AcyI	GRCGYC	1 cut(s)	979
AfaI	GTAC	1 cut(s)	1137
AfiI	CCNNNNNNNGG	4 cut(s)	380, 765, 799, 821
AgsI	TTSAA	5 cut(s)	154, 530, 785, 963, 1282
AjnI	CCWGG	1 cut(s)	814
Alw21I	GWGCWC	3 cut(s)	196, 610, 1207
Alw26I	GTCTC	3 cut(s)	87, 986, 1015
Alw44I	GTGCAC	1 cut(s)	192
AlwI	GGATC	5 cut(s)	134, 544, 557, 767, 1163
AlwNI	CAGNNNCTG	2 cut(s)	37, 491
Ama87I	CYCGRG	3 cut(s)	187, 1179, 1244
ApaLI	GTGCAC	1 cut(s)	192
ApeKI	GCWGC	7 cut(s)	170, 173, 313, 734, 911, 1094, 1223
ApoI	RAATTY	1 cut(s)	146
Asp700I	GAANNNNTTC	1 cut(s)	692
AspLEI	GCGC	1 cut(s)	292
AsuC2I	CCSGG	1 cut(s)	374
AsuHPI	GGTGA	1 cut(s)	836
AsuII	TTCGAA	1 cut(s)	1068
AvaI	CYCGRG	3 cut(s)	187, 1179, 1244
BaeGI	GKGCMC	2 cut(s)	196, 718
BamHI	GGATCC	1 cut(s)	549
BanI	GGYRCC	1 cut(s)	1073
Bbv12I	GWGCWC	3 cut(s)	196, 610, 1207
BbvCI	CCTCAGC	1 cut(s)	1049
BbvI	GCAGC	7 cut(s)	160, 182, 300, 746, 923, 1081, 1235
BccI	CCATC	4 cut(s)	303, 340, 682, 829
BceAI	ACGGC	2 cut(s)	462, 1325
BciT130I	CCWGG	1 cut(s)	816
BciVI	GTATCC	1 cut(s)	743
BclI	TGATCA	1 cut(s)	39
BcnI	CCSGG	1 cut(s)	374
BcoDI	GTCTC	3 cut(s)	87, 986, 1015
BfaI	CTAG	2 cut(s)	428, 1200
BfmI	CTRYAG	3 cut(s)	723, 1095, 1157
BfoI	RGCGCY	1 cut(s)	293
BfuI	GTATCC	1 cut(s)	743
BisI	GCNGC	8 cut(s)	171, 174, 314, 350, 735, 912, 1095, 1224
BlpI	GCTNAGC	1 cut(s)	492
BlsI	GCNGC	8 cut(s)	172, 175, 315, 351, 736, 913, 1096, 1225
Bme1390I	CCNGG	2 cut(s)	374, 816
BmeT110I	CYCGRG	3 cut(s)	187, 1179, 1244
BmiI	GGNNCC	3 cut(s)	551, 1075, 1242
BmrFI	CCNGG	2 cut(s)	374, 816
BmrI	ACTGGG	1 cut(s)	605
BmsI	GCATC	6 cut(s)	115, 229, 393, 478, 644, 1205
BmuI	ACTGGG	1 cut(s)	605
BpmI	CTGGAG	3 cut(s)	7, 429, 837
Bpu10I	CCTNAGC	1 cut(s)	1049
Bpu1102I	GCTNAGC	1 cut(s)	492
Bpu14I	TTCGAA	1 cut(s)	1068
BpuMI	CCSGG	1 cut(s)	374
BsaBI	GATNNNNATC	1 cut(s)	673
BsaHI	GRCGYC	1 cut(s)	979
BsaJI	CCNNGG	4 cut(s)	372, 814, 1236, 1245
BsaXI	ACNNNNNCTCC	2 cut(s)	564, 594
Bsc4I	CCNNNNNNNGG	4 cut(s)	380, 765, 799, 821
Bse118I	RCCGGY	1 cut(s)	286
Bse1I	ACTGG	3 cut(s)	55, 600, 1117
Bse3DI	GCAATG	1 cut(s)	1266
Bse8I	GATNNNNATC	1 cut(s)	673
BseBI	CCWGG	1 cut(s)	816
BseDI	CCNNGG	4 cut(s)	372, 814, 1236, 1245
BseGI	GGATG	2 cut(s)	210, 635
BseJI	GATNNNNATC	1 cut(s)	673
BseLI	CCNNNNNNNGG	4 cut(s)	380, 765, 799, 821
BseMI	GCAATG	1 cut(s)	1266
BseMII	CTCAG	3 cut(s)	69, 483, 1063
BseNI	ACTGG	3 cut(s)	55, 600, 1117
BseRI	GAGGAG	1 cut(s)	545
BseSI	GKGCMC	2 cut(s)	196, 718
BseXI	GCAGC	7 cut(s)	160, 182, 300, 746, 923, 1081, 1235
BshNI	GGYRCC	1 cut(s)	1073
BsiHKAI	GWGCWC	3 cut(s)	196, 610, 1207
BsiHKCI	CYCGRG	3 cut(s)	187, 1179, 1244
BsiSI	CCGG	3 cut(s)	287, 374, 381
BslFI	GGGAC	1 cut(s)	613
BslI	CCNNNNNNNGG	4 cut(s)	380, 765, 799, 821
BsmAI	GTCTC	3 cut(s)	87, 986, 1015
BsmBI	CGTCTC	1 cut(s)	986
BsmFI	GGGAC	1 cut(s)	613
BsoBI	CYCGRG	3 cut(s)	187, 1179, 1244
Bsp119I	TTCGAA	1 cut(s)	1068
Bsp1286I	GDGCHC	4 cut(s)	196, 610, 718, 1207
Bsp1407I	TGTACA	1 cut(s)	1135
Bsp143I	GATC	6 cut(s)	39, 126, 549, 772, 1168, 1349
Bsp1720I	GCTNAGC	1 cut(s)	492
BspACI	CCGC	2 cut(s)	350, 966
BspCNI	CTCAG	3 cut(s)	68, 484, 1062
BspHI	TCATGA	1 cut(s)	1352
BspLI	GGNNCC	3 cut(s)	551, 1075, 1242
BspMAI	CTGCAG	2 cut(s)	727, 1099
BspPI	GGATC	5 cut(s)	134, 544, 557, 767, 1163
BspT104I	TTCGAA	1 cut(s)	1068
BspT107I	GGYRCC	1 cut(s)	1073
BsrBI	CCGCTC	1 cut(s)	968
BsrDI	GCAATG	1 cut(s)	1266
BsrFI	RCCGGY	1 cut(s)	286
BsrGI	TGTACA	1 cut(s)	1135
BsrI	ACTGG	3 cut(s)	55, 600, 1117
BssAI	RCCGGY	1 cut(s)	286
BssECI	CCNNGG	4 cut(s)	372, 814, 1236, 1245
BssMI	GATC	6 cut(s)	39, 126, 549, 772, 1168, 1349
BssNI	GRCGYC	1 cut(s)	979
BssT1I	CCWWGG	1 cut(s)	1236
Bst2UI	CCWGG	1 cut(s)	816
Bst4CI	ACNGT	5 cut(s)	247, 643, 1009, 1036, 1161
BstACI	GRCGYC	1 cut(s)	979
BstAPI	GCANNNNNTGC	2 cut(s)	1202, 1333
BstAUI	TGTACA	1 cut(s)	1135
BstBI	TTCGAA	1 cut(s)	1068
BstC8I	GCNNGC	8 cut(s)	19, 67, 288, 416, 420, 909, 1334, 1338
BstDEI	CTNAG	3 cut(s)	55, 492, 1049
BstENI	CCTNNNNNAGG	1 cut(s)	797
BstF5I	GGATG	2 cut(s)	210, 635
BstH2I	RGCGCY	1 cut(s)	293
BstHHI	GCGC	1 cut(s)	292
BstKTI	GATC	6 cut(s)	42, 129, 552, 775, 1171, 1352
BstMAI	GTCTC	3 cut(s)	87, 986, 1015
BstMBI	GATC	6 cut(s)	39, 126, 549, 772, 1168, 1349
BstMWI	GCNNNNNNNGC	9 cut(s)	167, 239, 428, 722, 731, 740, 1202, 1232, 1333
BstNI	CCWGG	1 cut(s)	816
BstNSI	RCATGY	2 cut(s)	618, 911
BstSCI	CCNGG	2 cut(s)	372, 814
BstSFI	CTRYAG	3 cut(s)	723, 1095, 1157
BstSLI	GKGCMC	2 cut(s)	196, 718
BstV1I	GCAGC	7 cut(s)	160, 182, 300, 746, 923, 1081, 1235
BstX2I	RGATCY	2 cut(s)	549, 1168
BstYI	RGATCY	2 cut(s)	549, 1168
BsuI	GTATCC	1 cut(s)	743
BtsCI	GGATG	2 cut(s)	210, 635
BtsI	GCAGTG	1 cut(s)	744
BtsIMutI	CAGTG	4 cut(s)	243, 593, 639, 744
Cac8I	GCNNGC	8 cut(s)	19, 67, 288, 416, 420, 909, 1334, 1338
CaiI	CAGNNNCTG	2 cut(s)	37, 491
CciI	TCATGA	1 cut(s)	1352
CfoI	GCGC	1 cut(s)	292
Cfr10I	RCCGGY	1 cut(s)	286
Csp6I	GTAC	1 cut(s)	1136
CviAII	CATG	5 cut(s)	534, 615, 908, 1208, 1353
CviQI	GTAC	1 cut(s)	1136
DdeI	CTNAG	3 cut(s)	55, 492, 1049
DpnI	GATC	6 cut(s)	41, 128, 551, 774, 1170, 1351
DpnII	GATC	6 cut(s)	39, 126, 549, 772, 1168, 1349
Eco130I	CCWWGG	1 cut(s)	1236
Eco57I	CTGAAG	1 cut(s)	30
Eco88I	CYCGRG	3 cut(s)	187, 1179, 1244
EcoNI	CCTNNNNNAGG	1 cut(s)	797
EcoRII	CCWGG	1 cut(s)	814
EcoT14I	CCWWGG	1 cut(s)	1236
ErhI	CCWWGG	1 cut(s)	1236
Esp3I	CGTCTC	1 cut(s)	986
FaeI	CATG	5 cut(s)	537, 618, 911, 1211, 1356
FaqI	GGGAC	1 cut(s)	613
FatI	CATG	5 cut(s)	533, 614, 907, 1207, 1352
FbaI	TGATCA	1 cut(s)	39
Fnu4HI	GCNGC	8 cut(s)	171, 174, 314, 350, 735, 912, 1095, 1224
FokI	GGATG	2 cut(s)	217, 622
Fsp4HI	GCNGC	8 cut(s)	171, 174, 314, 350, 735, 912, 1095, 1224
FspBI	CTAG	2 cut(s)	428, 1200
GlaI	GCGC	1 cut(s)	291
GluI	GCNGC	8 cut(s)	171, 174, 314, 350, 735, 912, 1095, 1224
GsuI	CTGGAG	3 cut(s)	7, 429, 837
HaeII	RGCGCY	1 cut(s)	293
HapII	CCGG	3 cut(s)	287, 374, 381
HhaI	GCGC	1 cut(s)	292
Hin1I	GRCGYC	1 cut(s)	979
Hin1II	CATG	5 cut(s)	537, 618, 911, 1211, 1356
Hin6I	GCGC	1 cut(s)	290
HinP1I	GCGC	1 cut(s)	290
HindIII	AAGCTT	3 cut(s)	15, 265, 1330
HinfI	GANTC	4 cut(s)	34, 785, 840, 995
HpaII	CCGG	3 cut(s)	287, 374, 381
HphI	GGTGA	1 cut(s)	836
Hpy166II	GTNNAC	2 cut(s)	194, 583
Hpy188I	TCNGA	9 cut(s)	10, 39, 58, 306, 461, 612, 679, 834, 1166
Hpy188III	TCNNGA	8 cut(s)	151, 187, 202, 236, 388, 666, 901, 1353
Hpy8I	GTNNAC	2 cut(s)	194, 583
HpyAV	CCTTC	3 cut(s)	151, 629, 1064
HpyCH4III	ACNGT	5 cut(s)	247, 643, 1009, 1036, 1161
HpyCH4IV	ACGT	1 cut(s)	979
HpyF10VI	GCNNNNNNNGC	9 cut(s)	167, 239, 428, 722, 731, 740, 1202, 1232, 1333
HpyF3I	CTNAG	3 cut(s)	55, 492, 1049
HpySE526I	ACGT	1 cut(s)	979
Hsp92I	GRCGYC	1 cut(s)	979
Hsp92II	CATG	5 cut(s)	537, 618, 911, 1211, 1356
HspAI	GCGC	1 cut(s)	290
KroI	GCCGGC	1 cut(s)	286
KroNI	GCCGGC	1 cut(s)	288
Ksp22I	TGATCA	1 cut(s)	39
Kzo9I	GATC	6 cut(s)	39, 126, 549, 772, 1168, 1349
LmnI	GCTCC	4 cut(s)	26, 572, 818, 1124
Lsp1109I	GCAGC	7 cut(s)	160, 182, 300, 746, 923, 1081, 1235
LweI	GCATC	6 cut(s)	115, 229, 393, 478, 644, 1205
MaeI	CTAG	2 cut(s)	428, 1200
MaeII	ACGT	1 cut(s)	979
MaeIII	GTNAC	2 cut(s)	650, 1108
MalI	GATC	6 cut(s)	41, 128, 551, 774, 1170, 1351
MbiI	CCGCTC	1 cut(s)	968
MboI	GATC	6 cut(s)	39, 126, 549, 772, 1168, 1349
MboII	GAAGA	5 cut(s)	23, 166, 513, 697, 700
MflI	RGATCY	2 cut(s)	549, 1168
MhlI	GDGCHC	4 cut(s)	196, 610, 718, 1207
MluCI	AATT	9 cut(s)	146, 177, 222, 464, 702, 1014, 1078, 1129, 1311
MlyI	GAGTC	1 cut(s)	43
MmeI	TCCRAC	2 cut(s)	550, 907
MnlI	CCTC	9 cut(s)	404, 520, 563, 566, 869, 882, 897, 1058, 1240
MroNI	GCCGGC	1 cut(s)	286
MroXI	GAANNNNTTC	1 cut(s)	692
MseI	TTAA	2 cut(s)	180, 360
MspA1I	CMGCKG	2 cut(s)	173, 1094
MspI	CCGG	3 cut(s)	287, 374, 381
MspR9I	CCNGG	2 cut(s)	374, 816
MvaI	CCWGG	1 cut(s)	816
MwoI	GCNNNNNNNGC	9 cut(s)	167, 239, 428, 722, 731, 740, 1202, 1232, 1333
NaeI	GCCGGC	1 cut(s)	288
NciI	CCSGG	1 cut(s)	374
NdeII	GATC	6 cut(s)	39, 126, 549, 772, 1168, 1349
NgoMIV	GCCGGC	1 cut(s)	286
NlaIII	CATG	5 cut(s)	537, 618, 911, 1211, 1356
NlaIV	GGNNCC	3 cut(s)	551, 1075, 1242
NspI	RCATGY	2 cut(s)	618, 911
NspV	TTCGAA	1 cut(s)	1068
PaeI	GCATGC	1 cut(s)	911
PagI	TCATGA	1 cut(s)	1352
PdiI	GCCGGC	1 cut(s)	288
PdmI	GAANNNNTTC	1 cut(s)	692
PfeI	GAWTC	3 cut(s)	785, 840, 995
PflFI	GACNNNGTC	1 cut(s)	33
PkrI	GCNGC	8 cut(s)	172, 175, 315, 351, 736, 913, 1096, 1225
PleI	GAGTC	1 cut(s)	42
PpsI	GAGTC	1 cut(s)	42
Psp6I	CCWGG	1 cut(s)	814
PspGI	CCWGG	1 cut(s)	814
PspN4I	GGNNCC	3 cut(s)	551, 1075, 1242
PsrI	GAACNNNNNNTAC	2 cut(s)	1279, 1311
PstI	CTGCAG	2 cut(s)	727, 1099
PstNI	CAGNNNCTG	2 cut(s)	37, 491
PsuI	RGATCY	2 cut(s)	549, 1168
PsyI	GACNNNGTC	1 cut(s)	33
PvuII	CAGCTG	2 cut(s)	173, 1094
RsaI	GTAC	1 cut(s)	1137
RsaNI	GTAC	1 cut(s)	1136
SaqAI	TTAA	2 cut(s)	180, 360
SatI	GCNGC	8 cut(s)	171, 174, 314, 350, 735, 912, 1095, 1224
Sau3AI	GATC	6 cut(s)	39, 126, 549, 772, 1168, 1349
SchI	GAGTC	1 cut(s)	43
ScrFI	CCNGG	2 cut(s)	374, 816
SduI	GDGCHC	4 cut(s)	196, 610, 718, 1207
SfaNI	GCATC	6 cut(s)	115, 229, 393, 478, 644, 1205
SfcI	CTRYAG	3 cut(s)	723, 1095, 1157
SfuI	TTCGAA	1 cut(s)	1068
SphI	GCATGC	1 cut(s)	911
Sse9I	AATT	9 cut(s)	146, 177, 222, 464, 702, 1014, 1078, 1129, 1311
SsiI	CCGC	2 cut(s)	350, 966
SspMI	CTAG	2 cut(s)	428, 1200
StyD4I	CCNGG	2 cut(s)	372, 814
StyI	CCWWGG	1 cut(s)	1236
TaaI	ACNGT	5 cut(s)	247, 643, 1009, 1036, 1161
TaiI	ACGT	1 cut(s)	982
TaqI	TCGA	1 cut(s)	1068
TasI	AATT	9 cut(s)	146, 177, 222, 464, 702, 1014, 1078, 1129, 1311
TatI	WGTACW	1 cut(s)	1135
TauI	GCSGC	1 cut(s)	352
TfiI	GAWTC	3 cut(s)	785, 840, 995
Tru1I	TTAA	2 cut(s)	180, 360
Tru9I	TTAA	2 cut(s)	180, 360
TscAI	CASTG	4 cut(s)	250, 600, 646, 744
TseI	GCWGC	7 cut(s)	170, 173, 313, 734, 911, 1094, 1223
TspDTI	ATGAA	3 cut(s)	289, 795, 1071
TspRI	CASTG	4 cut(s)	250, 600, 646, 744
Tth111I	GACNNNGTC	1 cut(s)	33
VneI	GTGCAC	1 cut(s)	192
XagI	CCTNNNNNAGG	1 cut(s)	797
XapI	RAATTY	1 cut(s)	146
XceI	RCATGY	2 cut(s)	618, 911
XmnI	GAANNNNTTC	1 cut(s)	692
XspI	CTAG	2 cut(s)	428, 1200
ZraI	GACGTC	1 cut(s)	980

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.