Rmu_sc0000493.1_g000024

Cytochrome B561, N terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000493.1
OG0016195
Physical Location & Seq
Forward (+)
130356 .. 133024
2669 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1698 bp
atgggcttgacaagtcgtcagcttggacttctaggaattaagccaaaggttgaacaagttgtatccgagtctgcaaagaaacctcccaagtccaagccctacttgtcttccccttcagatgtccttgttccacttcatcagccaatcagcagttcaaatcgtctgtctcgaattggctcagataaatttaacaccagtggtggaaataagatgggatcgatcaccagtccctctaaatcacccagttccgcgtcttctttgtatcttgtcccaggagctgtttcaccaatgccatctgttcataattcacctggagtggattcagtggtctcttctccttggtcaagtaagcgagcccctggaagagagataacgtcagaagaaaagtttgaacagttcttggcagatgttgatgagaaaatcacacaatcagcaggaaaactggcaactccaccacccactatcagaggctttggtgtagccagtcccagttcagctaatacatctggaactacaaggagtacaccactgaggcctgtgagaatgtctccaggttcccagaagttcagcactcccccaaagaaaggggaaggtgagcttcctccacctatgtccatggaagaatctattaatgcatttgatcgtttgggcatctatcctcaaatcgagcagtggcgtgacaacctcaggcaatggttttcttcagttttgcttaatcccctactccataagattgagaacagtcatattcaggtttgcattcatcatgaacctcctcccctgtcatccttcgcttcatatgtaatggaagcagcttccaaacttgggatatcactcacaattagtcaaattggatgtgatttaccaactactggaactacttcagtgtcttcaactgacaggactaaggaatggcaacaaacattaactcttgatgaagatggagttatgcatcaagtacgagctactctcctccagtatattaatgcttccacctcacagctgcctcaagcaaatctccaacaaaccccacagcagaatttggtgcctattatgcaggagtgtgtcgatgcgatcactgaacaccagaggctacatgcattgatgaagggagagttaattaaaggtttgctaccgcaaagcagcattcgagcagaatacacagtacaaaggattcaagagcttgctgaaggaacctgcttgaggaactatgaatatcttggaagtggagaggtatatgataaaaagaacaagaagtggactgttgaactcccaaccgattctcacttgctcgtgtatttgttctgtgctttcctcgagcacccaaaatggatgctgcatggggattctatatctcatgctggagctcgatctagcaaaaatcccctcttcttgggagtcctaccacaaaaagaaagtattcctgagaagtacatagctgttgtatcaggtgtccctcctgctctccacccagggggttgtgttcttgttgttggacggaagagccccccagttttcgccttgtatttggataagaaattgcaattttctcttcagggaatgactgcattgtgggattctatattgcttctttgccacagcattaaggctggatatgggggaattgtccgtggcatgcatcttagttcttcagccgtgagaatcctccctgttcttgattcggaaactgaaggctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CytochromB561_N

Protein Analysis

565

Amino Acids

61.49

Weight (kDa)

8.76

Isoelectric Point (pI)

57.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CytochromB561_N PF09786 3 - 560 9.5e-184 Cytochrome B561, N terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016195)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07970
fragaria_vesca FvH4_3g32920
prunus_persica Prupe.6G097500_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0060051
rosa_laevigata RLG00000035342
rosa_multiflora Rmu_sc0000493.1_g000021 Rmu_sc0000493.1_g000024 Rmu_sc0003366.1_g000027
rosa_roxburghii Rroxscaffold_1G00020590
rosa_rugosa Rorug05G0327900
rosa_samantha Rh5AG391700 Rh5BG404400 Rh5CG428000 Rh5DG419900
rosa_wichuraiana Rw5G036910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1205
AccB1I GGYRCC 1 cut(s) 1045
AccB7I CCANNNNNTGG 1 cut(s) 872
AccII CGCG 1 cut(s) 251
AciI CCGC 2 cut(s) 249, 1136
AclWI GGATC 1 cut(s) 223
AcsI RAATTY 2 cut(s) 185, 1039
AcuI CTGAAG 6 cut(s) 99, 687, 867, 1209, 1538, 1635
AfaI GTAC 4 cut(s) 523, 960, 1167, 1433
AfiI CCNNNNNNNGG 6 cut(s) 584, 825, 872, 1203, 1393, 1474
AgsI TTSAA 6 cut(s) 53, 156, 392, 894, 1178, 1268
AhdI GACNNNNNGTC 1 cut(s) 15
AjnI CCWGG 5 cut(s) 271, 310, 358, 550, 1471
AjuI GAANNNNNNNTTGG 2 cut(s) 136, 168
Alw21I GWGCWC 2 cut(s) 1323, 1369
Alw26I GTCTC 3 cut(s) 171, 334, 552
AlwI GGATC 1 cut(s) 223
AlwNI CAGNNNCTG 1 cut(s) 278
Ama87I CYCGRG 1 cut(s) 1316
AoxI GGCC 1 cut(s) 533
ApeKI GCWGC 4 cut(s) 812, 1003, 1143, 1336
ApoI RAATTY 2 cut(s) 185, 1039
ArsI GACNNNNNNTTYG 2 cut(s) 149, 181
AseI ATTAAT 2 cut(s) 630, 984
Asp700I GAANNNNTTC 2 cut(s) 880, 1419
AsuHPI GGTGA 5 cut(s) 214, 231, 276, 300, 605
AvaI CYCGRG 1 cut(s) 1316
AxyI CCTNAGG 1 cut(s) 686
BanI GGYRCC 1 cut(s) 1045
BanII GRGCYC 3 cut(s) 358, 1369, 1508
BauI CACGAG 1 cut(s) 1292
BbsI GAAGAC 3 cut(s) 99, 246, 882
Bbv12I GWGCWC 2 cut(s) 1323, 1369
BbvI GCAGC 4 cut(s) 824, 990, 1155, 1323
BccI CCATC 3 cut(s) 205, 301, 935
BceAI ACGGC 1 cut(s) 1640
BciT130I CCWGG 5 cut(s) 273, 312, 360, 552, 1473
BciVI GTATCC 1 cut(s) 73
BcoDI GTCTC 3 cut(s) 171, 334, 552
BfaI CTAG 2 cut(s) 32, 1374
BfuAI ACCTGC 1 cut(s) 1205
BfuI GTATCC 1 cut(s) 73
BisI GCNGC 4 cut(s) 813, 1004, 1144, 1337
BlsI GCNGC 4 cut(s) 814, 1005, 1145, 1338
Bme1390I CCNGG 5 cut(s) 273, 312, 360, 552, 1473
BmeRI GACNNNNNGTC 1 cut(s) 15
BmeT110I CYCGRG 1 cut(s) 1316
BmiI GGNNCC 3 cut(s) 556, 1047, 1195
BmrFI CCNGG 5 cut(s) 273, 312, 360, 552, 1473
BmrI ACTGGG 3 cut(s) 237, 483, 1505
BmsI GCATC 5 cut(s) 660, 961, 1060, 1323, 1648
BmuI ACTGGG 3 cut(s) 237, 483, 1505
BpiI GAAGAC 3 cut(s) 99, 246, 882
BplI GAGNNNNNCTC 4 cut(s) 532, 564, 954, 986
BpmI CTGGAG 4 cut(s) 333, 534, 959, 1383
BpuEI CTTGAG 2 cut(s) 993, 1222
Bsa29I ATCGAT 1 cut(s) 218
BsaI GGTCTC 1 cut(s) 334
BsaJI CCNNGG 7 cut(s) 271, 338, 358, 615, 1471, 1472, 1630
Bsc4I CCNNNNNNNGG 6 cut(s) 584, 825, 872, 1203, 1393, 1474
Bse1I ACTGG 9 cut(s) 195, 225, 243, 447, 483, 489, 877, 976, 1511
Bse21I CCTNAGG 1 cut(s) 686
Bse3DI GCAATG 1 cut(s) 698
BseBI CCWGG 5 cut(s) 273, 312, 360, 552, 1473
BseCI ATCGAT 1 cut(s) 218
BseDI CCNNGG 7 cut(s) 271, 338, 358, 615, 1471, 1472, 1630
BseGI GGATG 3 cut(s) 785, 860, 1338
BseLI CCNNNNNNNGG 6 cut(s) 584, 825, 872, 1203, 1393, 1474
BseMI GCAATG 1 cut(s) 698
BseMII CTCAG 4 cut(s) 192, 521, 700, 1416
BseNI ACTGG 9 cut(s) 195, 225, 243, 447, 483, 489, 877, 976, 1511
BseRI GAGGAG 2 cut(s) 765, 962
BseXI GCAGC 4 cut(s) 824, 990, 1155, 1323
Bsh1236I CGCG 1 cut(s) 251
BshFI GGCC 1 cut(s) 535
BshNI GGYRCC 1 cut(s) 1045
BshVI ATCGAT 1 cut(s) 218
BsiHKAI GWGCWC 2 cut(s) 1323, 1369
BsiHKCI CYCGRG 1 cut(s) 1316
BslFI GGGAC 4 cut(s) 213, 254, 471, 1439
BslI CCNNNNNNNGG 6 cut(s) 584, 825, 872, 1203, 1393, 1474
BsmAI GTCTC 3 cut(s) 171, 334, 552
BsmFI GGGAC 4 cut(s) 213, 254, 471, 1439
BsmI GAATGC 2 cut(s) 759, 1146
BsnI GGCC 1 cut(s) 535
Bso31I GGTCTC 1 cut(s) 334
BsoBI CYCGRG 1 cut(s) 1316
Bsp1286I GDGCHC 4 cut(s) 358, 1323, 1369, 1508
Bsp143I GATC 5 cut(s) 215, 219, 640, 1074, 1370
Bsp19I CCATGG 1 cut(s) 615
BspACI CCGC 2 cut(s) 249, 1136
BspANI GGCC 1 cut(s) 535
BspCNI CTCAG 4 cut(s) 191, 522, 699, 1417
BspDI ATCGAT 1 cut(s) 218
BspFNI CGCG 1 cut(s) 251
BspHI TCATGA 1 cut(s) 766
BspLI GGNNCC 3 cut(s) 556, 1047, 1195
BspMI ACCTGC 1 cut(s) 1205
BspPI GGATC 1 cut(s) 223
BspQI GCTCTTC 1 cut(s) 1496
BspT107I GGYRCC 1 cut(s) 1045
BspTNI GGTCTC 1 cut(s) 334
BsrDI GCAATG 1 cut(s) 698
BsrI ACTGG 9 cut(s) 195, 225, 243, 447, 483, 489, 877, 976, 1511
BssECI CCNNGG 7 cut(s) 271, 338, 358, 615, 1471, 1472, 1630
BssMI GATC 5 cut(s) 215, 219, 640, 1074, 1370
BssSI CACGAG 1 cut(s) 1292
BssT1I CCWWGG 2 cut(s) 338, 615
Bst2BI CACGAG 1 cut(s) 1292
Bst2UI CCWGG 5 cut(s) 273, 312, 360, 552, 1473
Bst4CI ACNGT 4 cut(s) 396, 743, 1165, 1264
Bst6I CTCTTC 5 cut(s) 337, 358, 1394, 1496, 1557
BstC8I GCNNGC 3 cut(s) 354, 1185, 1637
BstDEI CTNAG 6 cut(s) 178, 530, 686, 906, 1425, 1643
BstDSI CCRYGG 2 cut(s) 615, 1630
BstENI CCTNNNNNAGG 1 cut(s) 1201
BstF5I GGATG 3 cut(s) 785, 860, 1338
BstFNI CGCG 1 cut(s) 251
BstKTI GATC 5 cut(s) 218, 222, 643, 1077, 1373
BstMAI GTCTC 3 cut(s) 171, 334, 552
BstMBI GATC 5 cut(s) 215, 219, 640, 1074, 1370
BstMWI GCNNNNNNNGC 1 cut(s) 1054
BstNI CCWGG 5 cut(s) 273, 312, 360, 552, 1473
BstNSI RCATGY 2 cut(s) 1100, 1639
BstSCI CCNGG 5 cut(s) 271, 310, 358, 550, 1471
BstUI CGCG 1 cut(s) 251
BstV1I GCAGC 4 cut(s) 824, 990, 1155, 1323
BstV2I GAAGAC 3 cut(s) 99, 246, 882
Bsu15I ATCGAT 1 cut(s) 218
Bsu36I CCTNAGG 1 cut(s) 686
BsuI GTATCC 1 cut(s) 73
BsuRI GGCC 1 cut(s) 535
BsuTUI ATCGAT 1 cut(s) 218
BtgI CCRYGG 2 cut(s) 615, 1630
BtsCI GGATG 3 cut(s) 785, 860, 1338
BtsI GCAGTG 1 cut(s) 677
BtsIMutI CAGTG 6 cut(s) 202, 330, 527, 677, 891, 1077
BveI ACCTGC 1 cut(s) 1205
Cac8I GCNNGC 3 cut(s) 354, 1185, 1637
CaiI CAGNNNCTG 1 cut(s) 278
CciI TCATGA 1 cut(s) 766
ClaI ATCGAT 1 cut(s) 218
CseI GACGC 1 cut(s) 240
Csp6I GTAC 4 cut(s) 522, 959, 1166, 1432
CviAII CATG 6 cut(s) 616, 767, 1097, 1340, 1358, 1636
CviQI GTAC 4 cut(s) 522, 959, 1166, 1432
DdeI CTNAG 6 cut(s) 178, 530, 686, 906, 1425, 1643
DpnI GATC 5 cut(s) 217, 221, 642, 1076, 1372
DpnII GATC 5 cut(s) 215, 219, 640, 1074, 1370
DriI GACNNNNNGTC 1 cut(s) 15
Eam1104I CTCTTC 5 cut(s) 337, 358, 1394, 1496, 1557
Eam1105I GACNNNNNGTC 1 cut(s) 15
EarI CTCTTC 5 cut(s) 337, 358, 1394, 1496, 1557
Ecl136II GAGCTC 1 cut(s) 1367
Eco130I CCWWGG 2 cut(s) 338, 615
Eco147I AGGCCT 1 cut(s) 535
Eco24I GRGCYC 3 cut(s) 358, 1369, 1508
Eco31I GGTCTC 1 cut(s) 334
Eco32I GATATC 1 cut(s) 831
Eco53kI GAGCTC 1 cut(s) 1367
Eco57I CTGAAG 6 cut(s) 99, 687, 867, 1209, 1538, 1635
Eco81I CCTNAGG 1 cut(s) 686
Eco88I CYCGRG 1 cut(s) 1316
EcoICRI GAGCTC 1 cut(s) 1367
EcoNI CCTNNNNNAGG 1 cut(s) 1201
EcoRII CCWGG 5 cut(s) 271, 310, 358, 550, 1471
EcoRV GATATC 1 cut(s) 831
EcoT14I CCWWGG 2 cut(s) 338, 615
EcoT22I ATGCAT 4 cut(s) 637, 954, 1102, 1641
EcoT38I GRGCYC 3 cut(s) 358, 1369, 1508
ErhI CCWWGG 2 cut(s) 338, 615
FaeI CATG 6 cut(s) 619, 770, 1100, 1343, 1361, 1639
FalI AAGNNNNNCTT 4 cut(s) 86, 118, 582, 614
FaqI GGGAC 4 cut(s) 213, 254, 471, 1439
FatI CATG 6 cut(s) 615, 766, 1096, 1339, 1357, 1635
FauNDI CATATG 1 cut(s) 799
Fnu4HI GCNGC 4 cut(s) 813, 1004, 1144, 1337
FokI GGATG 3 cut(s) 772, 867, 1345
FriOI GRGCYC 3 cut(s) 358, 1369, 1508
Fsp4HI GCNGC 4 cut(s) 813, 1004, 1144, 1337
FspBI CTAG 2 cut(s) 32, 1374
GluI GCNGC 4 cut(s) 813, 1004, 1144, 1337
GsuI CTGGAG 4 cut(s) 333, 534, 959, 1383
HaeIII GGCC 1 cut(s) 535
HgaI GACGC 1 cut(s) 240
Hin1II CATG 6 cut(s) 619, 770, 1100, 1343, 1361, 1639
HphI GGTGA 5 cut(s) 214, 231, 276, 300, 605
Hpy166II GTNNAC 2 cut(s) 524, 1260
Hpy188I TCNGA 6 cut(s) 67, 118, 181, 379, 467, 1684
Hpy188III TCNNGA 7 cut(s) 168, 507, 767, 932, 1178, 1424, 1676
Hpy8I GTNNAC 2 cut(s) 524, 1260
HpyAV CCTTC 6 cut(s) 123, 584, 799, 1102, 1184, 1685
HpyCH4III ACNGT 4 cut(s) 396, 743, 1165, 1264
HpyCH4IV ACGT 1 cut(s) 374
HpyF10VI GCNNNNNNNGC 1 cut(s) 1054
HpyF3I CTNAG 6 cut(s) 178, 530, 686, 906, 1425, 1643
HpySE526I ACGT 1 cut(s) 374
Hsp92II CATG 6 cut(s) 619, 770, 1100, 1343, 1361, 1639
Kzo9I GATC 5 cut(s) 215, 219, 640, 1074, 1370
LguI GCTCTTC 1 cut(s) 1496
LmnI GCTCC 2 cut(s) 275, 1364
Lsp1109I GCAGC 4 cut(s) 824, 990, 1155, 1323
LweI GCATC 5 cut(s) 660, 961, 1060, 1323, 1648
MaeI CTAG 2 cut(s) 32, 1374
MaeII ACGT 1 cut(s) 374
MaeIII GTNAC 1 cut(s) 677
MalI GATC 5 cut(s) 217, 221, 642, 1076, 1372
MboI GATC 5 cut(s) 215, 219, 640, 1074, 1370
MhlI GDGCHC 4 cut(s) 358, 1323, 1369, 1508
MlyI GAGTC 2 cut(s) 77, 1407
MmeI TCCRAC 2 cut(s) 1045, 1474
Mph1103I ATGCAT 4 cut(s) 637, 954, 1102, 1641
MroXI GAANNNNTTC 2 cut(s) 880, 1419
MseI TTAA 9 cut(s) 39, 189, 630, 714, 926, 984, 1118, 1122, 1605
MspA1I CMGCKG 1 cut(s) 1003
MspR9I CCNGG 5 cut(s) 273, 312, 360, 552, 1473
Mva1269I GAATGC 2 cut(s) 759, 1146
MvaI CCWGG 5 cut(s) 273, 312, 360, 552, 1473
MvnI CGCG 1 cut(s) 251
MwoI GCNNNNNNNGC 1 cut(s) 1054
NcoI CCATGG 1 cut(s) 615
NdeI CATATG 1 cut(s) 799
NdeII GATC 5 cut(s) 215, 219, 640, 1074, 1370
NlaIII CATG 6 cut(s) 619, 770, 1100, 1343, 1361, 1639
NlaIV GGNNCC 3 cut(s) 556, 1047, 1195
NmuCI GTSAC 1 cut(s) 677
NsiI ATGCAT 4 cut(s) 637, 954, 1102, 1641
NspI RCATGY 2 cut(s) 1100, 1639
PacI TTAATTAA 1 cut(s) 1122
PaeI GCATGC 1 cut(s) 1639
PaeR7I CTCGAG 1 cut(s) 1316
PagI TCATGA 1 cut(s) 766
PasI CCCWGGG 1 cut(s) 1472
PceI AGGCCT 1 cut(s) 535
PciSI GCTCTTC 1 cut(s) 1496
PcsI WCGNNNNNNNCGW 1 cut(s) 166
PctI GAATGC 2 cut(s) 759, 1146
PdmI GAANNNNTTC 2 cut(s) 880, 1419
PfeI GAWTC 8 cut(s) 320, 623, 1174, 1280, 1346, 1577, 1662, 1679
PflMI CCANNNNNTGG 1 cut(s) 872
PkrI GCNGC 4 cut(s) 814, 1005, 1145, 1338
PleI GAGTC 2 cut(s) 76, 1406
PpsI GAGTC 2 cut(s) 76, 1406
PshBI ATTAAT 2 cut(s) 630, 984
Psp124BI GAGCTC 1 cut(s) 1369
Psp6I CCWGG 5 cut(s) 271, 310, 358, 550, 1471
PspGI CCWGG 5 cut(s) 271, 310, 358, 550, 1471
PspN4I GGNNCC 3 cut(s) 556, 1047, 1195
PspXI VCTCGAGB 1 cut(s) 1316
PstNI CAGNNNCTG 1 cut(s) 278
PvuII CAGCTG 1 cut(s) 1003
RsaI GTAC 4 cut(s) 523, 960, 1167, 1433
RsaNI GTAC 4 cut(s) 522, 959, 1166, 1432
SacI GAGCTC 1 cut(s) 1369
SapI GCTCTTC 1 cut(s) 1496
SaqAI TTAA 9 cut(s) 39, 189, 630, 714, 926, 984, 1118, 1122, 1605
SatI GCNGC 4 cut(s) 813, 1004, 1144, 1337
Sau3AI GATC 5 cut(s) 215, 219, 640, 1074, 1370
SchI GAGTC 2 cut(s) 77, 1407
ScrFI CCNGG 5 cut(s) 273, 312, 360, 552, 1473
SduI GDGCHC 4 cut(s) 358, 1323, 1369, 1508
SfaNI GCATC 5 cut(s) 660, 961, 1060, 1323, 1648
Sfr274I CTCGAG 1 cut(s) 1316
SlaI CTCGAG 1 cut(s) 1316
SmlI CTYRAG 3 cut(s) 1008, 1201, 1316
SmoI CTYRAG 3 cut(s) 1008, 1201, 1316
SphI GCATGC 1 cut(s) 1639
SseBI AGGCCT 1 cut(s) 535
SsiI CCGC 2 cut(s) 249, 1136
SspMI CTAG 2 cut(s) 32, 1374
SstI GAGCTC 1 cut(s) 1369
StuI AGGCCT 1 cut(s) 535
StyD4I CCNGG 5 cut(s) 271, 310, 358, 550, 1471
StyI CCWWGG 2 cut(s) 338, 615
TaaI ACNGT 4 cut(s) 396, 743, 1165, 1264
TaiI ACGT 1 cut(s) 377
TaqI TCGA 7 cut(s) 169, 218, 666, 1068, 1150, 1317, 1369
TatI WGTACW 3 cut(s) 521, 1165, 1431
TfiI GAWTC 8 cut(s) 320, 623, 1174, 1280, 1346, 1577, 1662, 1679
Tru1I TTAA 9 cut(s) 39, 189, 630, 714, 926, 984, 1118, 1122, 1605
Tru9I TTAA 9 cut(s) 39, 189, 630, 714, 926, 984, 1118, 1122, 1605
TscAI CASTG 6 cut(s) 202, 330, 534, 677, 891, 1084
TseFI GTSAC 1 cut(s) 677
TseI GCWGC 4 cut(s) 812, 1003, 1143, 1336
Tsp45I GTSAC 1 cut(s) 677
TspDTI ATGAA 8 cut(s) 125, 290, 752, 783, 786, 951, 1121, 1227
TspGWI ACGGA 2 cut(s) 1513, 1619
TspRI CASTG 6 cut(s) 202, 330, 534, 677, 891, 1084
Van91I CCANNNNNTGG 1 cut(s) 872
VspI ATTAAT 2 cut(s) 630, 984
XagI CCTNNNNNAGG 1 cut(s) 1201
XapI RAATTY 2 cut(s) 185, 1039
XceI RCATGY 2 cut(s) 1100, 1639
XhoI CTCGAG 1 cut(s) 1316
XmnI GAANNNNTTC 2 cut(s) 880, 1419
XspI CTAG 2 cut(s) 32, 1374
Zsp2I ATGCAT 4 cut(s) 637, 954, 1102, 1641
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.