Rh5AG391700

Cytochrome B561, N terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0016195
Physical Location & Seq
Forward (+)
67913028 .. 67917070
4043 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG391700.1

Sequence Viewer

Length: 1530 bp
ATGGAGGGCAGAGACAACAAGGGCTCCTCGCCCCCACCAAAGCCCTCCAAGTTCTCGGTCTACCAGAACCCAACCCTCTCCGCCGCCCTCACCGCCAGCAGCCTCCGACCTCCCAAGCACGCCCTCCTCGTCATCTTCTCTCTCTCGTCCCTCTCCGCCGTCGCCTTCCTCGTCATTCTCTCCAGGGAGAATGAGTTTGTTAACAATTTGAAGCTCAATATTCTTTCCCAAGAGGCAGCCTATTTGTTTGTTAAAGTGGTACATACTGTTGTGGGATTAGTATTTTTGGCTACTCTGGTTGCATTCTTCAGAGTCATCTCGTTGAGAAATGCCGCTGTTGTGCCAACTGTATCTTCCTCCAAAGGAACCAAGGATAAGATGGGCTTGACAAGTCGTCAGCTTGGACTTCTAGGAATTAAGCCAAAGGTTGAACAAGTTGTATCCGAGTCTGCAAAGAAACCTCCCAAGTCCAAGCCCTACTTGTCTTCCCCTTCAGATGTCCTTGTTCCACTTCATCAGCCAATCAGCAGTTCAAATCGTCTGTCTCGAATTGGCTCAGATAAATTTAACACCAGTGGTGGAAATAAGATGGGATCGATCACCAGTCCCTCTAAATCACCCAGTTCCGCGTCTTCTTTGTATCTTGTCCCAGGAGCTGTTTCACCAATGTCTTCTGTTCACAATTCACCTGGAGTGGATTCAGTGGTCTCTTCTCCTTGGTCAAGTAAGCGAGCCCCTGGAAGAGAGATAACGTCAGAAGAAAAGTTTGAACAGTTCTTGGCAGATGTTGATGAGAAAATCACACAATCAGCAGGAAAACTGGCAACTCCACCACCCACTATCAGAGGCTTTGGTGTAGCCAGTCCCAGTTCAGCTAATACATCTGGAACTACAAGGAGTACACCACTGAGGCCTGTGAGAATGTCTCCAGGTTCCCAGAAGTTCAGCACTCCCCCAAAGAAAGGGGAAGGTGAGCTTCCTCCACCTATGTCCATGGAAGAATCTATTAATGCATTTGATCGTTTGGGCATCTATCCTCAAATCGAGCAGTGGCGTGACAACCTCAGGCAATGGTTTTCTTCAGTTTTGCTTAATCCCCTACTCCATAAGATTGAGAGCAGTCATATTCAGGTAATGGAAGCAGCTTCCAAACTTGGGATATCACTCACAATTAGTCAAATTGGATGTGATTTACCAACTACTGGAACTACTTCAGTGTCTTCAACTGACAGGACTAAGGAATGGCAACAAACATTAACTCTTGATGAAGATGGAGTTATGCATCAAGTACGAGCTACTCTCCTCCAGTATATTAATGCTTCCACTTGTAAGCTGGTCTTCATTTATTATCACATTAGATTTAAAATTCTTTTTGAAGGTTTCAGTATGTACTGCTTTTTTTATTTTATTTTAATTTTTTATCTGATTCTTCCCACCATATGCAGCACAGCTGCCTCAAGCAAATCTCCAACAAACCCCACAGCAGAATATGGTGCCTATTATGCAGGAGTGTGTCGATGTGATCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CytochromB561_N

Protein Analysis

509

Amino Acids

55.3

Weight (kDa)

9.48

Isoelectric Point (pI)

56.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CytochromB561_N PF09786 17 - 440 2e-121 Cytochrome B561, N terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016195)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07970
fragaria_vesca FvH4_3g32920
prunus_persica Prupe.6G097500_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0060051
rosa_laevigata RLG00000035342
rosa_multiflora Rmu_sc0000493.1_g000021 Rmu_sc0000493.1_g000024 Rmu_sc0003366.1_g000027
rosa_roxburghii Rroxscaffold_1G00020590
rosa_rugosa Rorug05G0327900
rosa_samantha Rh5AG391700 Rh5BG404400 Rh5CG428000 Rh5DG419900
rosa_wichuraiana Rw5G036910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1493
AccB7I CCANNNNNTGG 1 cut(s) 1202
AccI GTMKAC 1 cut(s) 60
AccII CGCG 1 cut(s) 629
AciI CCGC 6 cut(s) 81, 84, 93, 156, 333, 627
AclWI GGATC 1 cut(s) 601
AcsI RAATTY 2 cut(s) 563, 1365
AcuI CTGAAG 4 cut(s) 292, 477, 1065, 1197
AfaI GTAC 4 cut(s) 261, 901, 1290, 1391
AfiI CCNNNNNNNGG 3 cut(s) 962, 1155, 1202
AgsI TTSAA 6 cut(s) 211, 431, 534, 770, 1224, 1376
AhdI GACNNNNNGTC 1 cut(s) 393
AjnI CCWGG 5 cut(s) 182, 649, 688, 736, 928
AjuI GAANNNNNNNTTGG 4 cut(s) 337, 369, 514, 546
AluBI AGCT 9 cut(s) 214, 400, 656, 875, 976, 1145, 1295, 1333, 1451
AluI AGCT 9 cut(s) 214, 400, 656, 875, 976, 1145, 1295, 1333, 1451
Alw26I GTCTC 4 cut(s) 6, 549, 712, 930
AlwI GGATC 1 cut(s) 601
AlwNI CAGNNNCTG 1 cut(s) 656
AoxI GGCC 1 cut(s) 911
ApeKI GCWGC 5 cut(s) 99, 236, 1142, 1443, 1451
ApoI RAATTY 2 cut(s) 563, 1365
ArsI GACNNNNNNTTYG 2 cut(s) 527, 559
AseI ATTAAT 2 cut(s) 1008, 1314
Asp700I GAANNNNTTC 1 cut(s) 1210
AsuHPI GGTGA 6 cut(s) 82, 592, 609, 654, 678, 983
AxyI CCTNAGG 1 cut(s) 1064
BanI GGYRCC 1 cut(s) 1493
BanII GRGCYC 2 cut(s) 26, 736
BbsI GAAGAC 5 cut(s) 477, 624, 663, 1212, 1330
BbvI GCAGC 5 cut(s) 111, 248, 1154, 1438, 1455
BccI CCATC 3 cut(s) 373, 583, 1265
BceAI ACGGC 1 cut(s) 143
BciT130I CCWGG 5 cut(s) 184, 651, 690, 738, 930
BciVI GTATCC 1 cut(s) 451
BclI TGATCA 1 cut(s) 1522
BcoDI GTCTC 4 cut(s) 6, 549, 712, 930
BfaI CTAG 1 cut(s) 410
BfuI GTATCC 1 cut(s) 451
BisI GCNGC 7 cut(s) 84, 100, 237, 333, 1143, 1444, 1452
BlsI GCNGC 7 cut(s) 85, 101, 238, 334, 1144, 1445, 1453
Bme1390I CCNGG 5 cut(s) 184, 651, 690, 738, 930
BmeRI GACNNNNNGTC 1 cut(s) 393
BmiI GGNNCC 4 cut(s) 25, 367, 934, 1495
BmrFI CCNGG 5 cut(s) 184, 651, 690, 738, 930
BmrI ACTGGG 2 cut(s) 615, 861
BmsI GCATC 2 cut(s) 1038, 1291
BmuI ACTGGG 2 cut(s) 615, 861
BpiI GAAGAC 5 cut(s) 477, 624, 663, 1212, 1330
BplI GAGNNNNNCTC 4 cut(s) 910, 942, 1284, 1316
BpmI CTGGAG 4 cut(s) 166, 711, 912, 1289
BpuEI CTTGAG 1 cut(s) 1441
Bsa29I ATCGAT 1 cut(s) 596
BsaI GGTCTC 1 cut(s) 712
BsaJI CCNNGG 6 cut(s) 183, 369, 649, 716, 736, 993
BsaXI ACNNNNNCTCC 4 cut(s) 8, 38, 179, 209
Bsc4I CCNNNNNNNGG 3 cut(s) 962, 1155, 1202
Bse1I ACTGG 8 cut(s) 573, 603, 621, 825, 861, 867, 1207, 1306
Bse21I CCTNAGG 1 cut(s) 1064
Bse3DI GCAATG 1 cut(s) 1076
BseBI CCWGG 5 cut(s) 184, 651, 690, 738, 930
BseCI ATCGAT 1 cut(s) 596
BseDI CCNNGG 6 cut(s) 183, 369, 649, 716, 736, 993
BseGI GGATG 1 cut(s) 1190
BseLI CCNNNNNNNGG 3 cut(s) 962, 1155, 1202
BseMI GCAATG 1 cut(s) 1076
BseMII CTCAG 3 cut(s) 570, 899, 1078
BseNI ACTGG 8 cut(s) 573, 603, 621, 825, 861, 867, 1207, 1306
BseRI GAGGAG 3 cut(s) 16, 116, 1292
BseXI GCAGC 5 cut(s) 111, 248, 1154, 1438, 1455
Bsh1236I CGCG 1 cut(s) 629
BshFI GGCC 1 cut(s) 913
BshNI GGYRCC 1 cut(s) 1493
BshVI ATCGAT 1 cut(s) 596
BslFI GGGAC 4 cut(s) 133, 591, 632, 849
BslI CCNNNNNNNGG 3 cut(s) 962, 1155, 1202
BsmAI GTCTC 4 cut(s) 6, 549, 712, 930
BsmFI GGGAC 4 cut(s) 133, 591, 632, 849
BsmI GAATGC 1 cut(s) 302
BsnI GGCC 1 cut(s) 913
Bso31I GGTCTC 1 cut(s) 712
Bsp1286I GDGCHC 2 cut(s) 26, 736
Bsp143I GATC 4 cut(s) 593, 597, 1018, 1522
Bsp19I CCATGG 1 cut(s) 993
BspACI CCGC 6 cut(s) 81, 84, 93, 156, 333, 627
BspANI GGCC 1 cut(s) 913
BspCNI CTCAG 3 cut(s) 569, 900, 1077
BspDI ATCGAT 1 cut(s) 596
BspFNI CGCG 1 cut(s) 629
BspLI GGNNCC 4 cut(s) 25, 367, 934, 1495
BspPI GGATC 1 cut(s) 601
BspT107I GGYRCC 1 cut(s) 1493
BspTNI GGTCTC 1 cut(s) 712
BsrDI GCAATG 1 cut(s) 1076
BsrI ACTGG 8 cut(s) 573, 603, 621, 825, 861, 867, 1207, 1306
BssECI CCNNGG 6 cut(s) 183, 369, 649, 716, 736, 993
BssMI GATC 4 cut(s) 593, 597, 1018, 1522
BssT1I CCWWGG 3 cut(s) 369, 716, 993
Bst2UI CCWGG 5 cut(s) 184, 651, 690, 738, 930
Bst4CI ACNGT 3 cut(s) 268, 349, 774
Bst6I CTCTTC 2 cut(s) 715, 736
BstC8I GCNNGC 3 cut(s) 97, 120, 732
BstDEI CTNAG 4 cut(s) 556, 908, 1064, 1236
BstDSI CCRYGG 1 cut(s) 993
BstF5I GGATG 1 cut(s) 1190
BstFNI CGCG 1 cut(s) 629
BstKTI GATC 4 cut(s) 596, 600, 1021, 1525
BstMAI GTCTC 4 cut(s) 6, 549, 712, 930
BstMBI GATC 4 cut(s) 593, 597, 1018, 1522
BstMWI GCNNNNNNNGC 2 cut(s) 92, 1502
BstNI CCWGG 5 cut(s) 184, 651, 690, 738, 930
BstSCI CCNGG 5 cut(s) 182, 649, 688, 736, 928
BstUI CGCG 1 cut(s) 629
BstV1I GCAGC 5 cut(s) 111, 248, 1154, 1438, 1455
BstV2I GAAGAC 5 cut(s) 477, 624, 663, 1212, 1330
Bsu15I ATCGAT 1 cut(s) 596
Bsu36I CCTNAGG 1 cut(s) 1064
BsuI GTATCC 1 cut(s) 451
BsuRI GGCC 1 cut(s) 913
BsuTUI ATCGAT 1 cut(s) 596
BtgI CCRYGG 1 cut(s) 993
BtsCI GGATG 1 cut(s) 1190
BtsI GCAGTG 1 cut(s) 1055
BtsIMutI CAGTG 6 cut(s) 580, 708, 905, 1055, 1221, 1525
Cac8I GCNNGC 3 cut(s) 97, 120, 732
CaiI CAGNNNCTG 1 cut(s) 656
ClaI ATCGAT 1 cut(s) 596
CseI GACGC 1 cut(s) 618
Csp6I GTAC 4 cut(s) 260, 900, 1289, 1390
CviAII CATG 1 cut(s) 994
CviQI GTAC 4 cut(s) 260, 900, 1289, 1390
DdeI CTNAG 4 cut(s) 556, 908, 1064, 1236
DpnI GATC 4 cut(s) 595, 599, 1020, 1524
DpnII GATC 4 cut(s) 593, 597, 1018, 1522
DraI TTTAAA 1 cut(s) 1363
DriI GACNNNNNGTC 1 cut(s) 393
Eam1104I CTCTTC 2 cut(s) 715, 736
Eam1105I GACNNNNNGTC 1 cut(s) 393
EarI CTCTTC 2 cut(s) 715, 736
EciI GGCGGA 2 cut(s) 70, 145
Eco130I CCWWGG 3 cut(s) 369, 716, 993
Eco147I AGGCCT 1 cut(s) 913
Eco24I GRGCYC 2 cut(s) 26, 736
Eco31I GGTCTC 1 cut(s) 712
Eco32I GATATC 1 cut(s) 1161
Eco57I CTGAAG 4 cut(s) 292, 477, 1065, 1197
Eco81I CCTNAGG 1 cut(s) 1064
EcoRII CCWGG 5 cut(s) 182, 649, 688, 736, 928
EcoRV GATATC 1 cut(s) 1161
EcoT14I CCWWGG 3 cut(s) 369, 716, 993
EcoT22I ATGCAT 2 cut(s) 1015, 1284
EcoT38I GRGCYC 2 cut(s) 26, 736
ErhI CCWWGG 3 cut(s) 369, 716, 993
FaeI CATG 1 cut(s) 997
FalI AAGNNNNNCTT 8 cut(s) 368, 400, 464, 496, 960, 992, 1322, 1354
FaqI GGGAC 4 cut(s) 133, 591, 632, 849
FatI CATG 1 cut(s) 993
FauNDI CATATG 1 cut(s) 1439
FbaI TGATCA 1 cut(s) 1522
FblI GTMKAC 1 cut(s) 60
Fnu4HI GCNGC 7 cut(s) 84, 100, 237, 333, 1143, 1444, 1452
FokI GGATG 1 cut(s) 1197
FriOI GRGCYC 2 cut(s) 26, 736
Fsp4HI GCNGC 7 cut(s) 84, 100, 237, 333, 1143, 1444, 1452
FspBI CTAG 1 cut(s) 410
GluI GCNGC 7 cut(s) 84, 100, 237, 333, 1143, 1444, 1452
GsuI CTGGAG 4 cut(s) 166, 711, 912, 1289
HaeIII GGCC 1 cut(s) 913
HgaI GACGC 1 cut(s) 618
Hin1II CATG 1 cut(s) 997
HincII GTYRAC 1 cut(s) 202
HindII GTYRAC 1 cut(s) 202
HinfI GANTC 5 cut(s) 312, 446, 698, 1001, 1426
HpaI GTTAAC 1 cut(s) 202
HphI GGTGA 6 cut(s) 82, 592, 609, 654, 678, 983
Hpy166II GTNNAC 4 cut(s) 61, 202, 679, 902
Hpy188I TCNGA 8 cut(s) 107, 311, 445, 496, 559, 757, 845, 1425
Hpy188III TCNNGA 3 cut(s) 546, 885, 1262
Hpy8I GTNNAC 4 cut(s) 61, 202, 679, 902
Hpy99I CGWCG 1 cut(s) 164
HpyAV CCTTC 4 cut(s) 175, 501, 962, 1370
HpyCH4III ACNGT 3 cut(s) 268, 349, 774
HpyCH4IV ACGT 1 cut(s) 752
HpyCH4V TGCA 6 cut(s) 302, 452, 1013, 1282, 1443, 1505
HpyF10VI GCNNNNNNNGC 2 cut(s) 92, 1502
HpyF3I CTNAG 4 cut(s) 556, 908, 1064, 1236
HpySE526I ACGT 1 cut(s) 752
Hsp92II CATG 1 cut(s) 997
Ksp22I TGATCA 1 cut(s) 1522
KspAI GTTAAC 1 cut(s) 202
Kzo9I GATC 4 cut(s) 593, 597, 1018, 1522
LmnI GCTCC 2 cut(s) 29, 653
Lsp1109I GCAGC 5 cut(s) 111, 248, 1154, 1438, 1455
LweI GCATC 2 cut(s) 1038, 1291
MaeI CTAG 1 cut(s) 410
MaeII ACGT 1 cut(s) 752
MaeIII GTNAC 1 cut(s) 1055
MalI GATC 4 cut(s) 595, 599, 1020, 1524
MboI GATC 4 cut(s) 593, 597, 1018, 1522
MhlI GDGCHC 2 cut(s) 26, 736
MluCI AATT 9 cut(s) 205, 414, 549, 563, 682, 1170, 1179, 1365, 1413
MlyI GAGTC 2 cut(s) 321, 455
MmeI TCCRAC 2 cut(s) 130, 1493
Mph1103I ATGCAT 2 cut(s) 1015, 1284
MroXI GAANNNNTTC 1 cut(s) 1210
MspA1I CMGCKG 2 cut(s) 335, 1451
MspR9I CCNGG 5 cut(s) 184, 651, 690, 738, 930
Mva1269I GAATGC 1 cut(s) 302
MvaI CCWGG 5 cut(s) 184, 651, 690, 738, 930
MvnI CGCG 1 cut(s) 629
MwoI GCNNNNNNNGC 2 cut(s) 92, 1502
NcoI CCATGG 1 cut(s) 993
NdeI CATATG 1 cut(s) 1439
NdeII GATC 4 cut(s) 593, 597, 1018, 1522
NlaIII CATG 1 cut(s) 997
NlaIV GGNNCC 4 cut(s) 25, 367, 934, 1495
NmuCI GTSAC 1 cut(s) 1055
NsiI ATGCAT 2 cut(s) 1015, 1284
PceI AGGCCT 1 cut(s) 913
PcsI WCGNNNNNNNCGW 3 cut(s) 126, 168, 544
PctI GAATGC 1 cut(s) 302
PdmI GAANNNNTTC 1 cut(s) 1210
PfeI GAWTC 3 cut(s) 698, 1001, 1426
PflMI CCANNNNNTGG 1 cut(s) 1202
PkrI GCNGC 7 cut(s) 85, 101, 238, 334, 1144, 1445, 1453
PleI GAGTC 2 cut(s) 320, 454
PpsI GAGTC 2 cut(s) 320, 454
PshBI ATTAAT 2 cut(s) 1008, 1314
Psp6I CCWGG 5 cut(s) 182, 649, 688, 736, 928
PspGI CCWGG 5 cut(s) 182, 649, 688, 736, 928
PspN4I GGNNCC 4 cut(s) 25, 367, 934, 1495
PstNI CAGNNNCTG 1 cut(s) 656
PvuII CAGCTG 1 cut(s) 1451
RsaI GTAC 4 cut(s) 261, 901, 1290, 1391
RsaNI GTAC 4 cut(s) 260, 900, 1289, 1390
SatI GCNGC 7 cut(s) 84, 100, 237, 333, 1143, 1444, 1452
Sau3AI GATC 4 cut(s) 593, 597, 1018, 1522
SchI GAGTC 2 cut(s) 321, 455
ScrFI CCNGG 5 cut(s) 184, 651, 690, 738, 930
SduI GDGCHC 2 cut(s) 26, 736
SfaNI GCATC 2 cut(s) 1038, 1291
SmlI CTYRAG 1 cut(s) 1456
SmoI CTYRAG 1 cut(s) 1456
Sse9I AATT 9 cut(s) 205, 414, 549, 563, 682, 1170, 1179, 1365, 1413
SseBI AGGCCT 1 cut(s) 913
SsiI CCGC 6 cut(s) 81, 84, 93, 156, 333, 627
SspI AATATT 1 cut(s) 220
SspMI CTAG 1 cut(s) 410
StuI AGGCCT 1 cut(s) 913
StyD4I CCNGG 5 cut(s) 182, 649, 688, 736, 928
StyI CCWWGG 3 cut(s) 369, 716, 993
TaaI ACNGT 3 cut(s) 268, 349, 774
TaiI ACGT 1 cut(s) 755
TaqI TCGA 4 cut(s) 547, 596, 1044, 1516
TaqII GACCGA 1 cut(s) 46
TasI AATT 9 cut(s) 205, 414, 549, 563, 682, 1170, 1179, 1365, 1413
TatI WGTACW 2 cut(s) 899, 1389
TauI GCSGC 2 cut(s) 86, 335
TfiI GAWTC 3 cut(s) 698, 1001, 1426
TscAI CASTG 5 cut(s) 580, 708, 912, 1055, 1221
TseFI GTSAC 1 cut(s) 1055
TseI GCWGC 5 cut(s) 99, 236, 1142, 1443, 1451
Tsp45I GTSAC 1 cut(s) 1055
TspDTI ATGAA 3 cut(s) 503, 1281, 1330
TspRI CASTG 5 cut(s) 580, 708, 912, 1055, 1221
Van91I CCANNNNNTGG 1 cut(s) 1202
VspI ATTAAT 2 cut(s) 1008, 1314
XapI RAATTY 2 cut(s) 563, 1365
XcmI CCANNNNNNNNNTGG 2 cut(s) 376, 1330
XmiI GTMKAC 1 cut(s) 60
XmnI GAANNNNTTC 1 cut(s) 1210
XspI CTAG 1 cut(s) 410
Zsp2I ATGCAT 2 cut(s) 1015, 1284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.