Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000498.1

Orthogroup ID

OG0019843

Physical Location & Seq

Genomic Coordinates Forward (+)

258049 .. 262588

Gene Structure 4540 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000498.1_g000062.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

atggctatccccaccatgttcacaagtcagaaggttgcagaagcaacatgccttaaataccataacaatattgtcacttcactatcctaccactatgccaaaaaagcaatcagacaacagagttcagacgacagaatgatcagtcgattgactcgattctcagtctctctccggccagctcttgagctctccagctcggagggctttctaggtttgattttgggctggatttctgggtttgattttgggttgggtttctgggttcaaggcttcaaggcttcaagctcggtgattcttcaacctcgaagcttggaaaatgcagaggaggaggatatggataacaatgatgatcttactggagatgccattgaaagtgatgacaaggaagaacaggtaccagcagaacggcctcccaaaacatcaaaatttatagtgtttatcaatggtcaggaaaatgcagaggaggaggatatggataacaatgatgatcttgctggagatgccattgaaagtgatgacaaggaagaacagttgaaggctacagactttggcctgtcagattttgtgaaaccagatgaaaagtttatcaaaattgctggtagtacatactgtgtagcccccaaagtgttacatatggcttatggtacagaggctgatgtctggagcgtaggtcatccctgccttgaacatcataacactgttaaacttcctccggacataataatattcaagctcatgaaggtttatatgcgcttatcacctccccgcaaaactgctttaaggggagttttttgctcagctttccaggttggtgtatcaacatggtgtcttaacatgacagggccgatttttgtatctatgttcaagcctttggggatcgtagttgcagttgccactggttttggagtgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010286 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

303

Amino Acids

33.57

Weight (kDa)

4.89

Isoelectric Point (pI)

42.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019843)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0315171 RchiOBHm_Chr1g0315261
rosa_multiflora	Rmu_sc0000498.1_g000062 Rmu_sc0003413.1_g000052
rosa_rugosa	Rorug01G0004500 Rorug01G0004500
rosa_wichuraiana	Rw1G012930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	394
AccB1I	GGYRCC	1 cut(s)	394
AccIII	TCCGGA	1 cut(s)	712
AciI	CCGC	1 cut(s)	766
AclWI	GGATC	1 cut(s)	884
AcoI	YGGCCR	1 cut(s)	173
AcsI	RAATTY	1 cut(s)	425
AfaI	GTAC	3 cut(s)	396, 604, 646
AjnI	CCWGG	1 cut(s)	804
AluBI	AGCT	7 cut(s)	179, 187, 195, 285, 309, 733, 800
AluI	AGCT	7 cut(s)	179, 187, 195, 285, 309, 733, 800
Alw21I	GWGCWC	1 cut(s)	189
Alw26I	GTCTC	1 cut(s)	169
AlwI	GGATC	1 cut(s)	884
AlwNI	CAGNNNCTG	1 cut(s)	653
Aor13HI	TCCGGA	1 cut(s)	712
AoxI	GGCC	4 cut(s)	173, 407, 550, 842
ApoI	RAATTY	1 cut(s)	425
Asp718I	GGTACC	1 cut(s)	394
AspLEI	GCGC	1 cut(s)	753
AspS9I	GGNCC	1 cut(s)	842
AsuHPI	GGTGA	2 cut(s)	301, 750
BanI	GGYRCC	1 cut(s)	394
BanII	GRGCYC	1 cut(s)	189
BarI	GAAGNNNNNNTAC	2 cut(s)	378, 410
Bbv12I	GWGCWC	1 cut(s)	189
BceAI	ACGGC	1 cut(s)	422
BciT130I	CCWGG	1 cut(s)	806
BclI	TGATCA	1 cut(s)	138
BcoDI	GTCTC	1 cut(s)	169
BfaI	CTAG	1 cut(s)	209
BfmI	CTRYAG	1 cut(s)	540
BlpI	GCTNAGC	1 cut(s)	796
Bme1390I	CCNGG	1 cut(s)	806
BmgT120I	GGNCC	1 cut(s)	842
BmiI	GGNNCC	1 cut(s)	396
BmrFI	CCNGG	1 cut(s)	806
BmsI	GCATC	2 cut(s)	352, 490
BpmI	CTGGAG	4 cut(s)	175, 378, 516, 682
Bpu1102I	GCTNAGC	1 cut(s)	796
BpuEI	CTTGAG	1 cut(s)	203
BsaWI	WCCGGW	1 cut(s)	712
BsaXI	ACNNNNNCTCC	2 cut(s)	655, 685
Bse1I	ACTGG	2 cut(s)	361, 901
BseAI	TCCGGA	1 cut(s)	712
BseBI	CCWGG	1 cut(s)	806
BseGI	GGATG	1 cut(s)	673
BseMII	CTCAG	2 cut(s)	174, 810
BseNI	ACTGG	2 cut(s)	361, 901
BseRI	GAGGAG	4 cut(s)	338, 341, 476, 479
BshFI	GGCC	4 cut(s)	175, 409, 552, 844
BshNI	GGYRCC	1 cut(s)	394
BsiHKAI	GWGCWC	1 cut(s)	189
BsiSI	CCGG	2 cut(s)	172, 713
BsmAI	GTCTC	1 cut(s)	169
BsnI	GGCC	4 cut(s)	175, 409, 552, 844
Bsp1286I	GDGCHC	1 cut(s)	189
Bsp13I	TCCGGA	1 cut(s)	712
Bsp143I	GATC	4 cut(s)	138, 349, 487, 876
Bsp1720I	GCTNAGC	1 cut(s)	796
BspACI	CCGC	1 cut(s)	766
BspANI	GGCC	4 cut(s)	175, 409, 552, 844
BspCNI	CTCAG	2 cut(s)	173, 809
BspEI	TCCGGA	1 cut(s)	712
BspHI	TCATGA	1 cut(s)	735
BspLI	GGNNCC	1 cut(s)	396
BspPI	GGATC	1 cut(s)	884
BspT107I	GGYRCC	1 cut(s)	394
BsrI	ACTGG	2 cut(s)	361, 901
BssMI	GATC	4 cut(s)	138, 349, 487, 876
Bst2UI	CCWGG	1 cut(s)	806
Bst4CI	ACNGT	3 cut(s)	531, 611, 700
BstC8I	GCNNGC	1 cut(s)	177
BstDEI	CTNAG	2 cut(s)	160, 796
BstF5I	GGATG	1 cut(s)	673
BstHHI	GCGC	1 cut(s)	753
BstKTI	GATC	4 cut(s)	141, 352, 490, 879
BstMAI	GTCTC	1 cut(s)	169
BstMBI	GATC	4 cut(s)	138, 349, 487, 876
BstMWI	GCNNNNNNNGC	3 cut(s)	104, 201, 500
BstNI	CCWGG	1 cut(s)	806
BstNSI	RCATGY	1 cut(s)	51
BstSCI	CCNGG	1 cut(s)	804
BstSFI	CTRYAG	1 cut(s)	540
BsuRI	GGCC	4 cut(s)	175, 409, 552, 844
BtsCI	GGATG	1 cut(s)	673
BtsIMutI	CAGTG	2 cut(s)	696, 894
Cac8I	GCNNGC	1 cut(s)	177
CaiI	CAGNNNCTG	1 cut(s)	653
CciI	TCATGA	1 cut(s)	735
CfoI	GCGC	1 cut(s)	753
Cfr13I	GGNCC	1 cut(s)	842
Csp6I	GTAC	3 cut(s)	395, 603, 645
CspCI	CAANNNNNGTGG	1 cut(s)	883
CviAII	CATG	5 cut(s)	16, 48, 736, 822, 835
CviQI	GTAC	3 cut(s)	395, 603, 645
DdeI	CTNAG	2 cut(s)	160, 796
DpnI	GATC	4 cut(s)	140, 351, 489, 878
DpnII	GATC	4 cut(s)	138, 349, 487, 876
EaeI	YGGCCR	1 cut(s)	173
Ecl136II	GAGCTC	1 cut(s)	187
Eco24I	GRGCYC	1 cut(s)	189
Eco53kI	GAGCTC	1 cut(s)	187
EcoICRI	GAGCTC	1 cut(s)	187
EcoRII	CCWGG	1 cut(s)	804
EcoT38I	GRGCYC	1 cut(s)	189
FaeI	CATG	5 cut(s)	19, 51, 739, 825, 838
FatI	CATG	5 cut(s)	15, 47, 735, 821, 834
FauI	CCCGC	1 cut(s)	773
FauNDI	CATATG	1 cut(s)	633
FbaI	TGATCA	1 cut(s)	138
FokI	GGATG	1 cut(s)	660
FriOI	GRGCYC	1 cut(s)	189
FspBI	CTAG	1 cut(s)	209
GlaI	GCGC	1 cut(s)	752
GsuI	CTGGAG	4 cut(s)	175, 378, 516, 682
HaeIII	GGCC	4 cut(s)	175, 409, 552, 844
HapII	CCGG	2 cut(s)	172, 713
HhaI	GCGC	1 cut(s)	753
Hin1II	CATG	5 cut(s)	19, 51, 739, 825, 838
Hin6I	GCGC	1 cut(s)	751
HinP1I	GCGC	1 cut(s)	751
HindIII	AAGCTT	1 cut(s)	307
HinfI	GANTC	3 cut(s)	151, 156, 292
HpaII	CCGG	2 cut(s)	172, 713
HphI	GGTGA	2 cut(s)	301, 750
Hpy166II	GTNNAC	1 cut(s)	21
Hpy188I	TCNGA	5 cut(s)	30, 113, 127, 199, 559
Hpy188III	TCNNGA	5 cut(s)	182, 449, 661, 713, 736
Hpy8I	GTNNAC	1 cut(s)	21
HpyAV	CCTTC	3 cut(s)	25, 529, 733
HpyCH4III	ACNGT	3 cut(s)	531, 611, 700
HpyCH4V	TGCA	4 cut(s)	38, 320, 458, 887
HpyF10VI	GCNNNNNNNGC	3 cut(s)	104, 201, 500
HpyF3I	CTNAG	2 cut(s)	160, 796
Hsp92II	CATG	5 cut(s)	19, 51, 739, 825, 838
HspAI	GCGC	1 cut(s)	751
Kpn2I	TCCGGA	1 cut(s)	712
KpnI	GGTACC	1 cut(s)	398
Ksp22I	TGATCA	1 cut(s)	138
Kzo9I	GATC	4 cut(s)	138, 349, 487, 876
LmnI	GCTCC	1 cut(s)	663
LweI	GCATC	2 cut(s)	352, 490
MaeI	CTAG	1 cut(s)	209
MaeIII	GTNAC	2 cut(s)	73, 627
MalI	GATC	4 cut(s)	140, 351, 489, 878
MboI	GATC	4 cut(s)	138, 349, 487, 876
MboII	GAAGA	3 cut(s)	287, 398, 536
MhlI	GDGCHC	1 cut(s)	189
MluCI	AATT	2 cut(s)	425, 591
MlyI	GAGTC	1 cut(s)	145
MroI	TCCGGA	1 cut(s)	712
MseI	TTAA	4 cut(s)	54, 702, 779, 831
MspI	CCGG	2 cut(s)	172, 713
MspR9I	CCNGG	1 cut(s)	806
MvaI	CCWGG	1 cut(s)	806
MwoI	GCNNNNNNNGC	3 cut(s)	104, 201, 500
NdeI	CATATG	1 cut(s)	633
NdeII	GATC	4 cut(s)	138, 349, 487, 876
NlaIII	CATG	5 cut(s)	19, 51, 739, 825, 838
NlaIV	GGNNCC	1 cut(s)	396
NmuCI	GTSAC	1 cut(s)	73
NspI	RCATGY	1 cut(s)	51
PagI	TCATGA	1 cut(s)	735
PcsI	WCGNNNNNNNCGW	1 cut(s)	151
PfeI	GAWTC	2 cut(s)	156, 292
PleI	GAGTC	1 cut(s)	145
PpsI	GAGTC	1 cut(s)	145
Psp124BI	GAGCTC	1 cut(s)	189
Psp6I	CCWGG	1 cut(s)	804
PspGI	CCWGG	1 cut(s)	804
PspN4I	GGNNCC	1 cut(s)	396
PspPI	GGNCC	1 cut(s)	842
PstNI	CAGNNNCTG	1 cut(s)	653
RsaI	GTAC	3 cut(s)	396, 604, 646
RsaNI	GTAC	3 cut(s)	395, 603, 645
SacI	GAGCTC	1 cut(s)	189
SaqAI	TTAA	4 cut(s)	54, 702, 779, 831
Sau3AI	GATC	4 cut(s)	138, 349, 487, 876
Sau96I	GGNCC	1 cut(s)	842
SchI	GAGTC	1 cut(s)	145
ScrFI	CCNGG	1 cut(s)	806
SduI	GDGCHC	1 cut(s)	189
SfaNI	GCATC	2 cut(s)	352, 490
SfcI	CTRYAG	1 cut(s)	540
SmlI	CTYRAG	1 cut(s)	182
SmoI	CTYRAG	1 cut(s)	182
Sse9I	AATT	2 cut(s)	425, 591
SsiI	CCGC	1 cut(s)	766
SspI	AATATT	2 cut(s)	70, 726
SspMI	CTAG	1 cut(s)	209
SstI	GAGCTC	1 cut(s)	189
StyD4I	CCNGG	1 cut(s)	804
TaaI	ACNGT	3 cut(s)	531, 611, 700
TaqI	TCGA	3 cut(s)	145, 154, 304
TasI	AATT	2 cut(s)	425, 591
TatI	WGTACW	1 cut(s)	602
TfiI	GAWTC	2 cut(s)	156, 292
Tru1I	TTAA	4 cut(s)	54, 702, 779, 831
Tru9I	TTAA	4 cut(s)	54, 702, 779, 831
TscAI	CASTG	2 cut(s)	703, 901
TseFI	GTSAC	1 cut(s)	73
Tsp45I	GTSAC	1 cut(s)	73
TspDTI	ATGAA	2 cut(s)	591, 752
TspRI	CASTG	2 cut(s)	703, 901
XapI	RAATTY	1 cut(s)	425
XceI	RCATGY	1 cut(s)	51
XspI	CTAG	1 cut(s)	209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.