Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003413.1

Orthogroup ID

OG0019843

Physical Location & Seq

Genomic Coordinates Reverse (-)

227177 .. 229145

Gene Structure 1969 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003413.1_g000052.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

atggataacaatgatgatcttgctggagatgccattgaaagtgatgacaaggaagaacagttgaaggctacagactttggcctgtcagattttgtgaaaccagatgaaaagtttatcaaaattgctggtagtacatactgtgtagcccccaaagtgttacatatggcttatggtacagaggctgatgtctggagcgtaggtcatccctgccttgaacatcataacactgttaaacttcctccggacataataatattcaagctcatgaaggtttatatgcgcttatcacctccccgcaaaactgctttaaggggagttttttgctcagctttccaggttggtgtatcaacatggtgtcttaacatgacagggccgatttttgtatctatgttcaagcctttggggatcgtagttgcagttgccactggttttggagtgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010286 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

146

Amino Acids

16.01

Weight (kDa)

5.74

Isoelectric Point (pI)

15.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019843)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0315171 RchiOBHm_Chr1g0315261
rosa_multiflora	Rmu_sc0000498.1_g000062 Rmu_sc0003413.1_g000052
rosa_rugosa	Rorug01G0004500 Rorug01G0004500
rosa_wichuraiana	Rw1G012930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	241
AciI	CCGC	1 cut(s)	295
AclWI	GGATC	1 cut(s)	413
AfaI	GTAC	2 cut(s)	133, 175
AgsI	TTSAA	5 cut(s)	38, 64, 215, 259, 394
AjnI	CCWGG	1 cut(s)	333
AluBI	AGCT	2 cut(s)	262, 329
AluI	AGCT	2 cut(s)	262, 329
AlwI	GGATC	1 cut(s)	413
AlwNI	CAGNNNCTG	1 cut(s)	182
Aor13HI	TCCGGA	1 cut(s)	241
AoxI	GGCC	2 cut(s)	79, 371
AspLEI	GCGC	1 cut(s)	282
AspS9I	GGNCC	1 cut(s)	371
AsuHPI	GGTGA	1 cut(s)	279
BciT130I	CCWGG	1 cut(s)	335
BfmI	CTRYAG	1 cut(s)	69
BlpI	GCTNAGC	1 cut(s)	325
Bme1390I	CCNGG	1 cut(s)	335
BmgT120I	GGNCC	1 cut(s)	371
BmrFI	CCNGG	1 cut(s)	335
BmsI	GCATC	1 cut(s)	19
BpmI	CTGGAG	2 cut(s)	45, 211
Bpu1102I	GCTNAGC	1 cut(s)	325
BsaWI	WCCGGW	1 cut(s)	241
BsaXI	ACNNNNNCTCC	2 cut(s)	184, 214
Bse1I	ACTGG	1 cut(s)	430
BseAI	TCCGGA	1 cut(s)	241
BseBI	CCWGG	1 cut(s)	335
BseGI	GGATG	1 cut(s)	202
BseMII	CTCAG	1 cut(s)	339
BseNI	ACTGG	1 cut(s)	430
BshFI	GGCC	2 cut(s)	81, 373
BsiSI	CCGG	1 cut(s)	242
BsnI	GGCC	2 cut(s)	81, 373
Bsp13I	TCCGGA	1 cut(s)	241
Bsp143I	GATC	2 cut(s)	16, 405
Bsp1720I	GCTNAGC	1 cut(s)	325
BspACI	CCGC	1 cut(s)	295
BspANI	GGCC	2 cut(s)	81, 373
BspCNI	CTCAG	1 cut(s)	338
BspEI	TCCGGA	1 cut(s)	241
BspHI	TCATGA	1 cut(s)	264
BspPI	GGATC	1 cut(s)	413
BsrI	ACTGG	1 cut(s)	430
BssMI	GATC	2 cut(s)	16, 405
Bst2UI	CCWGG	1 cut(s)	335
Bst4CI	ACNGT	3 cut(s)	60, 140, 229
BstDEI	CTNAG	1 cut(s)	325
BstF5I	GGATG	1 cut(s)	202
BstHHI	GCGC	1 cut(s)	282
BstKTI	GATC	2 cut(s)	19, 408
BstMBI	GATC	2 cut(s)	16, 405
BstMWI	GCNNNNNNNGC	1 cut(s)	29
BstNI	CCWGG	1 cut(s)	335
BstSCI	CCNGG	1 cut(s)	333
BstSFI	CTRYAG	1 cut(s)	69
BsuRI	GGCC	2 cut(s)	81, 373
BtsCI	GGATG	1 cut(s)	202
BtsIMutI	CAGTG	2 cut(s)	225, 423
CaiI	CAGNNNCTG	1 cut(s)	182
CciI	TCATGA	1 cut(s)	264
CfoI	GCGC	1 cut(s)	282
Cfr13I	GGNCC	1 cut(s)	371
Csp6I	GTAC	2 cut(s)	132, 174
CspCI	CAANNNNNGTGG	1 cut(s)	412
CviAII	CATG	3 cut(s)	265, 351, 364
CviJI	RGCY	9 cut(s)	68, 81, 146, 167, 182, 262, 329, 373, 397
CviKI_1	RGCY	9 cut(s)	68, 81, 146, 167, 182, 262, 329, 373, 397
CviQI	GTAC	2 cut(s)	132, 174
DdeI	CTNAG	1 cut(s)	325
DpnI	GATC	2 cut(s)	18, 407
DpnII	GATC	2 cut(s)	16, 405
EcoRII	CCWGG	1 cut(s)	333
FaeI	CATG	3 cut(s)	268, 354, 367
FatI	CATG	3 cut(s)	264, 350, 363
FauI	CCCGC	1 cut(s)	302
FauNDI	CATATG	1 cut(s)	162
FokI	GGATG	1 cut(s)	189
GlaI	GCGC	1 cut(s)	281
GsuI	CTGGAG	2 cut(s)	45, 211
HaeIII	GGCC	2 cut(s)	81, 373
HapII	CCGG	1 cut(s)	242
HhaI	GCGC	1 cut(s)	282
Hin1II	CATG	3 cut(s)	268, 354, 367
Hin6I	GCGC	1 cut(s)	280
HinP1I	GCGC	1 cut(s)	280
HpaII	CCGG	1 cut(s)	242
HphI	GGTGA	1 cut(s)	279
Hpy188I	TCNGA	1 cut(s)	88
Hpy188III	TCNNGA	3 cut(s)	190, 242, 265
HpyAV	CCTTC	2 cut(s)	58, 262
HpyCH4III	ACNGT	3 cut(s)	60, 140, 229
HpyCH4V	TGCA	1 cut(s)	416
HpyF10VI	GCNNNNNNNGC	1 cut(s)	29
HpyF3I	CTNAG	1 cut(s)	325
Hsp92II	CATG	3 cut(s)	268, 354, 367
HspAI	GCGC	1 cut(s)	280
Kpn2I	TCCGGA	1 cut(s)	241
Kzo9I	GATC	2 cut(s)	16, 405
LmnI	GCTCC	1 cut(s)	192
LweI	GCATC	1 cut(s)	19
MaeIII	GTNAC	1 cut(s)	156
MalI	GATC	2 cut(s)	18, 407
MboI	GATC	2 cut(s)	16, 405
MboII	GAAGA	1 cut(s)	65
MluCI	AATT	1 cut(s)	120
MnlI	CCTC	3 cut(s)	172, 249, 300
MroI	TCCGGA	1 cut(s)	241
MseI	TTAA	3 cut(s)	231, 308, 360
MspI	CCGG	1 cut(s)	242
MspR9I	CCNGG	1 cut(s)	335
MvaI	CCWGG	1 cut(s)	335
MwoI	GCNNNNNNNGC	1 cut(s)	29
NdeI	CATATG	1 cut(s)	162
NdeII	GATC	2 cut(s)	16, 405
NlaIII	CATG	3 cut(s)	268, 354, 367
PagI	TCATGA	1 cut(s)	264
Psp6I	CCWGG	1 cut(s)	333
PspGI	CCWGG	1 cut(s)	333
PspPI	GGNCC	1 cut(s)	371
PstNI	CAGNNNCTG	1 cut(s)	182
RsaI	GTAC	2 cut(s)	133, 175
RsaNI	GTAC	2 cut(s)	132, 174
SaqAI	TTAA	3 cut(s)	231, 308, 360
Sau3AI	GATC	2 cut(s)	16, 405
Sau96I	GGNCC	1 cut(s)	371
ScrFI	CCNGG	1 cut(s)	335
SetI	ASST	6 cut(s)	202, 264, 273, 292, 331, 339
SfaNI	GCATC	1 cut(s)	19
SfcI	CTRYAG	1 cut(s)	69
Sse9I	AATT	1 cut(s)	120
SsiI	CCGC	1 cut(s)	295
SspI	AATATT	1 cut(s)	255
StyD4I	CCNGG	1 cut(s)	333
TaaI	ACNGT	3 cut(s)	60, 140, 229
TasI	AATT	1 cut(s)	120
TatI	WGTACW	1 cut(s)	131
Tru1I	TTAA	3 cut(s)	231, 308, 360
Tru9I	TTAA	3 cut(s)	231, 308, 360
TscAI	CASTG	2 cut(s)	232, 430
TspDTI	ATGAA	2 cut(s)	120, 281
TspRI	CASTG	2 cut(s)	232, 430

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.