Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0019843

Physical Location & Seq

Genomic Coordinates Forward (+)

28818599 .. 28819373

Gene Structure 775 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G012930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGAACCTTGGCCACATTCTCTACAGAGGCAAAAGTAATTTGGTCAAGCGCCTATTGAATCAAGACCCACGGAAAAGAATTACCACTGCACAACTTGCAGGTCATCCCTGCCTTGAACATCATAACACTGTTAAACTTCCTCCGGACATAATAATATTCAAGCTCATGAAGGTTTATATGCGCTTATCACCTCTCCGCAAAACTGCTTTAAGGGGAGTTTTTTGCTCAGCTTTCCAGGTTGGTGTATCAACATGGTGTCTTAACATGACAGGGCCGATTTTTGTATCTATGTTCAAGCCTTTGGGGATCGTAGTTGCAGTTGCCACTGGTTTTGGAGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

113

Amino Acids

12.59

Weight (kDa)

10.56

Isoelectric Point (pI)

21.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019843)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0315171 RchiOBHm_Chr1g0315261
rosa_multiflora	Rmu_sc0000498.1_g000062 Rmu_sc0003413.1_g000052
rosa_rugosa	Rorug01G0004500 Rorug01G0004500
rosa_wichuraiana	Rw1G012930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	89
AccIII	TCCGGA	1 cut(s)	142
AciI	CCGC	1 cut(s)	196
AclWI	GGATC	1 cut(s)	314
AcoI	YGGCCR	1 cut(s)	10
AgsI	TTSAA	4 cut(s)	58, 116, 160, 295
AjnI	CCWGG	1 cut(s)	234
AluBI	AGCT	2 cut(s)	163, 230
AluI	AGCT	2 cut(s)	163, 230
AlwI	GGATC	1 cut(s)	314
Aor13HI	TCCGGA	1 cut(s)	142
AoxI	GGCC	2 cut(s)	10, 272
AspLEI	GCGC	2 cut(s)	51, 183
AspS9I	GGNCC	1 cut(s)	272
AsuHPI	GGTGA	1 cut(s)	180
BalI	TGGCCA	1 cut(s)	12
BciT130I	CCWGG	1 cut(s)	236
BfmI	CTRYAG	1 cut(s)	22
BfoI	RGCGCY	1 cut(s)	52
BfuAI	ACCTGC	1 cut(s)	89
BlpI	GCTNAGC	1 cut(s)	226
Bme1390I	CCNGG	1 cut(s)	236
BmgT120I	GGNCC	1 cut(s)	272
BmrFI	CCNGG	1 cut(s)	236
Bpu1102I	GCTNAGC	1 cut(s)	226
BsaJI	CCNNGG	2 cut(s)	7, 68
BsaWI	WCCGGW	1 cut(s)	142
Bse1I	ACTGG	1 cut(s)	331
BseAI	TCCGGA	1 cut(s)	142
BseBI	CCWGG	1 cut(s)	236
BseDI	CCNNGG	2 cut(s)	7, 68
BseGI	GGATG	1 cut(s)	103
BseMII	CTCAG	1 cut(s)	240
BseNI	ACTGG	1 cut(s)	331
BsgI	GTGCAG	1 cut(s)	72
BshFI	GGCC	2 cut(s)	12, 274
BsiSI	CCGG	1 cut(s)	143
BsnI	GGCC	2 cut(s)	12, 274
Bsp13I	TCCGGA	1 cut(s)	142
Bsp143I	GATC	1 cut(s)	306
Bsp1720I	GCTNAGC	1 cut(s)	226
BspACI	CCGC	1 cut(s)	196
BspANI	GGCC	2 cut(s)	12, 274
BspCNI	CTCAG	1 cut(s)	239
BspEI	TCCGGA	1 cut(s)	142
BspHI	TCATGA	1 cut(s)	165
BspMI	ACCTGC	1 cut(s)	89
BspPI	GGATC	1 cut(s)	314
BsrI	ACTGG	1 cut(s)	331
BssECI	CCNNGG	2 cut(s)	7, 68
BssMI	GATC	1 cut(s)	306
BssT1I	CCWWGG	1 cut(s)	7
Bst2UI	CCWGG	1 cut(s)	236
Bst4CI	ACNGT	1 cut(s)	130
BstAPI	GCANNNNNTGC	1 cut(s)	95
BstDEI	CTNAG	1 cut(s)	226
BstDSI	CCRYGG	1 cut(s)	68
BstF5I	GGATG	1 cut(s)	103
BstH2I	RGCGCY	1 cut(s)	52
BstHHI	GCGC	2 cut(s)	51, 183
BstKTI	GATC	1 cut(s)	309
BstMBI	GATC	1 cut(s)	306
BstMWI	GCNNNNNNNGC	1 cut(s)	95
BstNI	CCWGG	1 cut(s)	236
BstSCI	CCNGG	1 cut(s)	234
BstSFI	CTRYAG	1 cut(s)	22
BsuRI	GGCC	2 cut(s)	12, 274
BtgI	CCRYGG	1 cut(s)	68
BtsCI	GGATG	1 cut(s)	103
BtsI	GCAGTG	1 cut(s)	84
BtsIMutI	CAGTG	3 cut(s)	84, 126, 324
BveI	ACCTGC	1 cut(s)	89
CciI	TCATGA	1 cut(s)	165
CfoI	GCGC	2 cut(s)	51, 183
Cfr13I	GGNCC	1 cut(s)	272
CspCI	CAANNNNNGTGG	1 cut(s)	313
CviAII	CATG	3 cut(s)	166, 252, 265
CviJI	RGCY	5 cut(s)	12, 163, 230, 274, 298
CviKI_1	RGCY	5 cut(s)	12, 163, 230, 274, 298
DdeI	CTNAG	1 cut(s)	226
DpnI	GATC	1 cut(s)	308
DpnII	GATC	1 cut(s)	306
EaeI	YGGCCR	1 cut(s)	10
Eco130I	CCWWGG	1 cut(s)	7
EcoRII	CCWGG	1 cut(s)	234
EcoT14I	CCWWGG	1 cut(s)	7
ErhI	CCWWGG	1 cut(s)	7
FaeI	CATG	3 cut(s)	169, 255, 268
FaiI	YATR	8 cut(s)	123, 149, 167, 177, 179, 253, 266, 290
FatI	CATG	3 cut(s)	165, 251, 264
FokI	GGATG	1 cut(s)	90
GlaI	GCGC	2 cut(s)	50, 182
HaeII	RGCGCY	1 cut(s)	52
HaeIII	GGCC	2 cut(s)	12, 274
HapII	CCGG	1 cut(s)	143
HhaI	GCGC	2 cut(s)	51, 183
Hin1II	CATG	3 cut(s)	169, 255, 268
Hin6I	GCGC	2 cut(s)	49, 181
HinP1I	GCGC	2 cut(s)	49, 181
HinfI	GANTC	1 cut(s)	58
HpaII	CCGG	1 cut(s)	143
HphI	GGTGA	1 cut(s)	180
Hpy188III	TCNNGA	3 cut(s)	62, 143, 166
HpyAV	CCTTC	1 cut(s)	163
HpyCH4III	ACNGT	1 cut(s)	130
HpyCH4V	TGCA	3 cut(s)	89, 98, 317
HpyF10VI	GCNNNNNNNGC	1 cut(s)	95
HpyF3I	CTNAG	1 cut(s)	226
Hsp92II	CATG	3 cut(s)	169, 255, 268
HspAI	GCGC	2 cut(s)	49, 181
Kpn2I	TCCGGA	1 cut(s)	142
Kzo9I	GATC	1 cut(s)	306
LpnPI	CCDG	7 cut(s)	84, 121, 156, 221, 248, 255, 312
MalI	GATC	1 cut(s)	308
MboI	GATC	1 cut(s)	306
MlsI	TGGCCA	1 cut(s)	12
MluCI	AATT	2 cut(s)	37, 78
MluNI	TGGCCA	1 cut(s)	12
MnlI	CCTC	3 cut(s)	20, 150, 201
Mox20I	TGGCCA	1 cut(s)	12
MroI	TCCGGA	1 cut(s)	142
MscI	TGGCCA	1 cut(s)	12
MseI	TTAA	3 cut(s)	132, 209, 261
Msp20I	TGGCCA	1 cut(s)	12
MspI	CCGG	1 cut(s)	143
MspR9I	CCNGG	1 cut(s)	236
MvaI	CCWGG	1 cut(s)	236
MwoI	GCNNNNNNNGC	1 cut(s)	95
NdeII	GATC	1 cut(s)	306
NlaIII	CATG	3 cut(s)	169, 255, 268
PagI	TCATGA	1 cut(s)	165
PfeI	GAWTC	1 cut(s)	58
Psp6I	CCWGG	1 cut(s)	234
PspGI	CCWGG	1 cut(s)	234
PspPI	GGNCC	1 cut(s)	272
SaqAI	TTAA	3 cut(s)	132, 209, 261
Sau3AI	GATC	1 cut(s)	306
Sau96I	GGNCC	1 cut(s)	272
ScrFI	CCNGG	1 cut(s)	236
SetI	ASST	7 cut(s)	9, 103, 165, 174, 193, 232, 240
SfcI	CTRYAG	1 cut(s)	22
Sse9I	AATT	2 cut(s)	37, 78
SsiI	CCGC	1 cut(s)	196
SspI	AATATT	1 cut(s)	156
StyD4I	CCNGG	1 cut(s)	234
StyI	CCWWGG	1 cut(s)	7
TaaI	ACNGT	1 cut(s)	130
TasI	AATT	2 cut(s)	37, 78
TfiI	GAWTC	1 cut(s)	58
Tru1I	TTAA	3 cut(s)	132, 209, 261
Tru9I	TTAA	3 cut(s)	132, 209, 261
TscAI	CASTG	3 cut(s)	91, 133, 331
TspDTI	ATGAA	2 cut(s)	17, 182
TspGWI	ACGGA	1 cut(s)	85
TspRI	CASTG	3 cut(s)	91, 133, 331

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.