Rmu_sc0000593.1_g000002

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000593.1
OG0021636
Physical Location & Seq
Reverse (-)
6737 .. 7342
606 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000593.1_g000002.1.cds

Sequence Viewer

Length: 606 bp
atgttaagggtcggaacagagccgccgacgacgttcagcttttcgggggtgttggtgtgttgcgcacagttagaagctgaagagcttggagctcaggtgcacggtttgagcttgaaaatggggctttttgatgatgttgtggtgggaacagaggtcaaatcagataataccaccttcctgattgtactaactgcctgcagccatgttggtttgttggacgaagggctcgagtatttcaatctaatgagaaatgatgatttgcctgagccacccaaggtggagcattatgctaccgttgttgatctttttggtcgggctggaaaccttcacgaagcggaagccttcgtcaatagcatgccaatagagccaggtgcctcagtaaacaaagctctacttagttcgtgccaagttcatggaaacagaggacttgctcttcgttctgcaacaaagcttcagcaactgtgcccaaatgatcctgcaacttacgtactgctatcaaatgtgttgttgacaagaggctccagggatgttgcagcaggagtacggaagatcatgtgtgatagaggaataagcaagctagaacatgcatttgtaaatcacgtctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 Pkinase_Tyr

Protein Analysis

201

Amino Acids

21.69

Weight (kDa)

5.44

Isoelectric Point (pI)

35.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021636)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0000593.1_g000002 Rmu_sc0007790.1_g000001
rosa_roxburghii Rroxscaffold_2G00123800 Rroxscaffold_2G00123890
rosa_samantha Rh3DG236800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 64
AccB1I GGYRCC 1 cut(s) 371
AciI CCGC 2 cut(s) 23, 335
AclWI GGATC 1 cut(s) 467
AcuI CTGAAG 2 cut(s) 99, 437
AfaI GTAC 3 cut(s) 186, 489, 543
AgsI TTSAA 2 cut(s) 115, 238
AjiI CACGTC 1 cut(s) 601
AjnI CCWGG 2 cut(s) 367, 521
AluBI AGCT 8 cut(s) 39, 77, 85, 92, 111, 389, 451, 577
AluI AGCT 8 cut(s) 39, 77, 85, 92, 111, 389, 451, 577
Alw21I GWGCWC 2 cut(s) 94, 102
Alw44I GTGCAC 1 cut(s) 98
AlwI GGATC 1 cut(s) 467
AlwNI CAGNNNCTG 1 cut(s) 460
Ama87I CYCGRG 1 cut(s) 227
ApaLI GTGCAC 1 cut(s) 98
ApeKI GCWGC 2 cut(s) 198, 533
ArsI GACNNNNNNTTYG 2 cut(s) 417, 449
AspLEI GCGC 1 cut(s) 65
AvaI CYCGRG 1 cut(s) 227
BaeGI GKGCMC 2 cut(s) 102, 467
BanI GGYRCC 1 cut(s) 371
BanII GRGCYC 2 cut(s) 94, 228
Bbv12I GWGCWC 2 cut(s) 94, 102
BbvI GCAGC 2 cut(s) 210, 545
BciT130I CCWGG 2 cut(s) 369, 523
BfaI CTAG 1 cut(s) 578
BfmI CTRYAG 1 cut(s) 196
BisI GCNGC 3 cut(s) 23, 199, 534
BlsI GCNGC 3 cut(s) 24, 200, 535
Bme1390I CCNGG 2 cut(s) 369, 523
BmeT110I CYCGRG 1 cut(s) 227
BmgBI CACGTC 1 cut(s) 601
BmiI GGNNCC 2 cut(s) 373, 520
BmrFI CCNGG 2 cut(s) 369, 523
BpmI CTGGAG 1 cut(s) 505
Bpu10I CCTNAGC 2 cut(s) 93, 264
BsaAI YACGTR 1 cut(s) 487
BsaJI CCNNGG 2 cut(s) 273, 522
BsaXI ACNNNNNCTCC 2 cut(s) 81, 111
BseBI CCWGG 2 cut(s) 369, 523
BseDI CCNNGG 2 cut(s) 273, 522
BseGI GGATG 1 cut(s) 532
BseMII CTCAG 3 cut(s) 107, 255, 390
BseSI GKGCMC 2 cut(s) 102, 467
BseXI GCAGC 2 cut(s) 210, 545
BshNI GGYRCC 1 cut(s) 371
BsiHKAI GWGCWC 2 cut(s) 94, 102
BsiHKCI CYCGRG 1 cut(s) 227
BsoBI CYCGRG 1 cut(s) 227
Bsp1286I GDGCHC 4 cut(s) 94, 102, 228, 467
Bsp143I GATC 3 cut(s) 301, 472, 549
BspACI CCGC 2 cut(s) 23, 335
BspCNI CTCAG 3 cut(s) 106, 256, 389
BspLI GGNNCC 2 cut(s) 373, 520
BspMAI CTGCAG 1 cut(s) 200
BspPI GGATC 1 cut(s) 467
BspQI GCTCTTC 2 cut(s) 75, 438
BspT107I GGYRCC 1 cut(s) 371
BssECI CCNNGG 2 cut(s) 273, 522
BssMI GATC 3 cut(s) 301, 472, 549
BssT1I CCWWGG 1 cut(s) 273
Bst2UI CCWGG 2 cut(s) 369, 523
Bst4CI ACNGT 4 cut(s) 69, 104, 295, 462
Bst6I CTCTTC 2 cut(s) 75, 438
BstBAI YACGTR 1 cut(s) 487
BstC8I GCNNGC 3 cut(s) 196, 356, 575
BstDEI CTNAG 4 cut(s) 93, 264, 376, 395
BstF5I GGATG 1 cut(s) 532
BstHHI GCGC 1 cut(s) 65
BstKTI GATC 3 cut(s) 304, 475, 552
BstMBI GATC 3 cut(s) 301, 472, 549
BstMWI GCNNNNNNNGC 1 cut(s) 364
BstNI CCWGG 2 cut(s) 369, 523
BstNSI RCATGY 2 cut(s) 358, 587
BstSCI CCNGG 2 cut(s) 367, 521
BstSFI CTRYAG 1 cut(s) 196
BstSLI GKGCMC 2 cut(s) 102, 467
BstSNI TACGTA 1 cut(s) 487
BstV1I GCAGC 2 cut(s) 210, 545
BstXI CCANNNNNNTGG 1 cut(s) 413
BtrI CACGTC 1 cut(s) 601
BtsCI GGATG 1 cut(s) 532
Cac8I GCNNGC 3 cut(s) 196, 356, 575
CaiI CAGNNNCTG 1 cut(s) 460
CfoI GCGC 1 cut(s) 65
Csp6I GTAC 3 cut(s) 185, 488, 542
CviAII CATG 5 cut(s) 203, 355, 413, 553, 584
CviQI GTAC 3 cut(s) 185, 488, 542
DdeI CTNAG 4 cut(s) 93, 264, 376, 395
DpnI GATC 3 cut(s) 303, 474, 551
DpnII GATC 3 cut(s) 301, 472, 549
Eam1104I CTCTTC 2 cut(s) 75, 438
EarI CTCTTC 2 cut(s) 75, 438
Ecl136II GAGCTC 1 cut(s) 92
Eco105I TACGTA 1 cut(s) 487
Eco130I CCWWGG 1 cut(s) 273
Eco24I GRGCYC 2 cut(s) 94, 228
Eco53kI GAGCTC 1 cut(s) 92
Eco57I CTGAAG 2 cut(s) 99, 437
Eco88I CYCGRG 1 cut(s) 227
EcoICRI GAGCTC 1 cut(s) 92
EcoRII CCWGG 2 cut(s) 367, 521
EcoT14I CCWWGG 1 cut(s) 273
EcoT22I ATGCAT 1 cut(s) 589
EcoT38I GRGCYC 2 cut(s) 94, 228
ErhI CCWWGG 1 cut(s) 273
FaeI CATG 5 cut(s) 206, 358, 416, 556, 587
FaiI YATR 6 cut(s) 204, 288, 356, 414, 554, 585
FalI AAGNNNNNCTT 2 cut(s) 378, 410
FatI CATG 5 cut(s) 202, 354, 412, 552, 583
Fnu4HI GCNGC 3 cut(s) 23, 199, 534
FokI GGATG 1 cut(s) 539
FriOI GRGCYC 2 cut(s) 94, 228
Fsp4HI GCNGC 3 cut(s) 23, 199, 534
FspBI CTAG 1 cut(s) 578
FspI TGCGCA 1 cut(s) 64
GlaI GCGC 1 cut(s) 64
GluI GCNGC 3 cut(s) 23, 199, 534
GsuI CTGGAG 1 cut(s) 505
HhaI GCGC 1 cut(s) 65
Hin1II CATG 5 cut(s) 206, 358, 416, 556, 587
Hin6I GCGC 1 cut(s) 63
HinP1I GCGC 1 cut(s) 63
HincII GTYRAC 1 cut(s) 510
HindII GTYRAC 1 cut(s) 510
HindIII AAGCTT 1 cut(s) 449
Hpy166II GTNNAC 3 cut(s) 100, 382, 510
Hpy188I TCNGA 3 cut(s) 14, 163, 605
Hpy188III TCNNGA 2 cut(s) 178, 329
Hpy8I GTNNAC 3 cut(s) 100, 382, 510
Hpy99I CGWCG 2 cut(s) 31, 34
HpyAV CCTTC 4 cut(s) 184, 215, 335, 352
HpyCH4III ACNGT 4 cut(s) 69, 104, 295, 462
HpyCH4IV ACGT 3 cut(s) 32, 486, 600
HpyCH4V TGCA 6 cut(s) 100, 198, 443, 479, 533, 587
HpyF10VI GCNNNNNNNGC 1 cut(s) 364
HpyF3I CTNAG 4 cut(s) 93, 264, 376, 395
HpySE526I ACGT 3 cut(s) 32, 486, 600
Hsp92II CATG 5 cut(s) 206, 358, 416, 556, 587
HspAI GCGC 1 cut(s) 63
Kzo9I GATC 3 cut(s) 301, 472, 549
LguI GCTCTTC 2 cut(s) 75, 438
LmnI GCTCC 3 cut(s) 89, 280, 524
Lsp1109I GCAGC 2 cut(s) 210, 545
MaeI CTAG 1 cut(s) 578
MaeII ACGT 3 cut(s) 32, 486, 600
MalI GATC 3 cut(s) 303, 474, 551
MboI GATC 3 cut(s) 301, 472, 549
MboII GAAGA 3 cut(s) 92, 425, 559
MhlI GDGCHC 4 cut(s) 94, 102, 228, 467
MmeI TCCRAC 1 cut(s) 195
MnlI CCTC 5 cut(s) 145, 385, 416, 509, 557
Mph1103I ATGCAT 1 cut(s) 589
MseI TTAA 1 cut(s) 5
MspR9I CCNGG 2 cut(s) 369, 523
MvaI CCWGG 2 cut(s) 369, 523
MwoI GCNNNNNNNGC 1 cut(s) 364
NdeII GATC 3 cut(s) 301, 472, 549
NlaIII CATG 5 cut(s) 206, 358, 416, 556, 587
NlaIV GGNNCC 2 cut(s) 373, 520
NsbI TGCGCA 1 cut(s) 64
NsiI ATGCAT 1 cut(s) 589
NspI RCATGY 2 cut(s) 358, 587
PaeI GCATGC 1 cut(s) 358
PaeR7I CTCGAG 1 cut(s) 227
PciSI GCTCTTC 2 cut(s) 75, 438
PcsI WCGNNNNNNNCGW 1 cut(s) 225
PkrI GCNGC 3 cut(s) 24, 200, 535
Ppu21I YACGTR 1 cut(s) 487
Psp124BI GAGCTC 1 cut(s) 94
Psp6I CCWGG 2 cut(s) 367, 521
PspGI CCWGG 2 cut(s) 367, 521
PspN4I GGNNCC 2 cut(s) 373, 520
PspXI VCTCGAGB 1 cut(s) 227
PstI CTGCAG 1 cut(s) 200
PstNI CAGNNNCTG 1 cut(s) 460
RsaI GTAC 3 cut(s) 186, 489, 543
RsaNI GTAC 3 cut(s) 185, 488, 542
SacI GAGCTC 1 cut(s) 94
SapI GCTCTTC 2 cut(s) 75, 438
SaqAI TTAA 1 cut(s) 5
SatI GCNGC 3 cut(s) 23, 199, 534
Sau3AI GATC 3 cut(s) 301, 472, 549
ScrFI CCNGG 2 cut(s) 369, 523
SduI GDGCHC 4 cut(s) 94, 102, 228, 467
SfcI CTRYAG 1 cut(s) 196
Sfr274I CTCGAG 1 cut(s) 227
SlaI CTCGAG 1 cut(s) 227
SmlI CTYRAG 1 cut(s) 227
SmoI CTYRAG 1 cut(s) 227
SnaBI TACGTA 1 cut(s) 487
SphI GCATGC 1 cut(s) 358
SsiI CCGC 2 cut(s) 23, 335
SspMI CTAG 1 cut(s) 578
SstI GAGCTC 1 cut(s) 94
StyD4I CCNGG 2 cut(s) 367, 521
StyI CCWWGG 1 cut(s) 273
TaaI ACNGT 4 cut(s) 69, 104, 295, 462
TaiI ACGT 3 cut(s) 35, 489, 603
TaqI TCGA 1 cut(s) 228
TatI WGTACW 1 cut(s) 184
TauI GCSGC 1 cut(s) 25
Tru1I TTAA 1 cut(s) 5
Tru9I TTAA 1 cut(s) 5
TseI GCWGC 2 cut(s) 198, 533
TspDTI ATGAA 1 cut(s) 401
TspGWI ACGGA 1 cut(s) 559
VneI GTGCAC 1 cut(s) 98
XceI RCATGY 2 cut(s) 358, 587
XhoI CTCGAG 1 cut(s) 227
XspI CTAG 1 cut(s) 578
Zsp2I ATGCAT 1 cut(s) 589
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.