Rroxscaffold_2G00123800

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0021636
Physical Location & Seq
Forward (+)
57771137 .. 57772555
1419 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00123800.1

Sequence Viewer

Length: 315 bp
ATGCCAATAGAGCCAGGTGCCTCAGTATACAAAGCTCTACTTAGTGTGCGCCAAGTTCATGGAAACAGAGAACTTGCTCTTCGTTCTGCAACAAAGCTGCAGCAACTGTGCCCAAATGATCCTGCAACTTACATACTGCTATCAAATGTGTTGTTGACAAGAGGCTCCTGGGATGATGCAGCAGGAGTACGGAAGCTCATTTCATGGGTTCTTCAGTCCACTCTACGAGCAGCTTGGCTTCGAGATATTTGTTTAAGTCCAGATGTGCTTAACGGTGAAGCAAATGCAGTTAAAGATGGAGCTTCAGTCTCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 Pkinase_Tyr

Protein Analysis

104

Amino Acids

11.26

Weight (kDa)

8.74

Isoelectric Point (pI)

45.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
E_motif PF20431 20 - 66 2.6e-07 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021636)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0000593.1_g000002 Rmu_sc0007790.1_g000001
rosa_roxburghii Rroxscaffold_2G00123800 Rroxscaffold_2G00123890
rosa_samantha Rh3DG236800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 17
AccI GTMKAC 1 cut(s) 27
AclWI GGATC 1 cut(s) 113
AcuI CTGAAG 2 cut(s) 197, 288
AfaI GTAC 1 cut(s) 189
AjnI CCWGG 2 cut(s) 13, 167
AluBI AGCT 5 cut(s) 35, 97, 196, 233, 302
AluI AGCT 5 cut(s) 35, 97, 196, 233, 302
AlwI GGATC 1 cut(s) 113
AlwNI CAGNNNCTG 1 cut(s) 106
ApeKI GCWGC 4 cut(s) 97, 100, 179, 230
AspLEI GCGC 1 cut(s) 51
AsuHPI GGTGA 1 cut(s) 287
BaeGI GKGCMC 1 cut(s) 113
BanI GGYRCC 1 cut(s) 17
BbvI GCAGC 4 cut(s) 84, 112, 191, 242
BccI CCATC 1 cut(s) 290
BciT130I CCWGG 2 cut(s) 15, 169
BfmI CTRYAG 1 cut(s) 98
BisI GCNGC 4 cut(s) 98, 101, 180, 231
BlsI GCNGC 4 cut(s) 99, 102, 181, 232
Bme1390I CCNGG 2 cut(s) 15, 169
BmiI GGNNCC 2 cut(s) 19, 166
BmrFI CCNGG 2 cut(s) 15, 169
BmsI GCATC 1 cut(s) 166
BsaJI CCNNGG 1 cut(s) 168
BsaXI ACNNNNNCTCC 1 cut(s) 291
BseBI CCWGG 2 cut(s) 15, 169
BseDI CCNNGG 1 cut(s) 168
BseGI GGATG 1 cut(s) 178
BseMII CTCAG 1 cut(s) 36
BseSI GKGCMC 1 cut(s) 113
BseXI GCAGC 4 cut(s) 84, 112, 191, 242
BshNI GGYRCC 1 cut(s) 17
Bsp1286I GDGCHC 1 cut(s) 113
Bsp143I GATC 1 cut(s) 118
BspCNI CTCAG 1 cut(s) 35
BspLI GGNNCC 2 cut(s) 19, 166
BspMAI CTGCAG 1 cut(s) 102
BspPI GGATC 1 cut(s) 113
BspQI GCTCTTC 1 cut(s) 84
BspT107I GGYRCC 1 cut(s) 17
BssECI CCNNGG 1 cut(s) 168
BssMI GATC 1 cut(s) 118
BssNAI GTATAC 1 cut(s) 28
Bst1107I GTATAC 1 cut(s) 28
Bst2UI CCWGG 2 cut(s) 15, 169
Bst4CI ACNGT 2 cut(s) 108, 275
Bst6I CTCTTC 1 cut(s) 84
BstDEI CTNAG 2 cut(s) 22, 41
BstF5I GGATG 1 cut(s) 178
BstHHI GCGC 1 cut(s) 51
BstKTI GATC 1 cut(s) 121
BstMBI GATC 1 cut(s) 118
BstMWI GCNNNNNNNGC 1 cut(s) 10
BstNI CCWGG 2 cut(s) 15, 169
BstSCI CCNGG 2 cut(s) 13, 167
BstSFI CTRYAG 1 cut(s) 98
BstSLI GKGCMC 1 cut(s) 113
BstV1I GCAGC 4 cut(s) 84, 112, 191, 242
BstXI CCANNNNNNTGG 1 cut(s) 59
BstZ17I GTATAC 1 cut(s) 28
BtsCI GGATG 1 cut(s) 178
CaiI CAGNNNCTG 1 cut(s) 106
CfoI GCGC 1 cut(s) 51
Csp6I GTAC 1 cut(s) 188
CviAII CATG 2 cut(s) 59, 204
CviJI RGCY 8 cut(s) 13, 35, 97, 165, 196, 233, 238, 302
CviKI_1 RGCY 8 cut(s) 13, 35, 97, 165, 196, 233, 238, 302
CviQI GTAC 1 cut(s) 188
DdeI CTNAG 2 cut(s) 22, 41
DpnI GATC 1 cut(s) 120
DpnII GATC 1 cut(s) 118
Eam1104I CTCTTC 1 cut(s) 84
EarI CTCTTC 1 cut(s) 84
Eco57I CTGAAG 2 cut(s) 197, 288
EcoRII CCWGG 2 cut(s) 13, 167
FaeI CATG 2 cut(s) 62, 207
FaiI YATR 4 cut(s) 28, 60, 134, 205
FalI AAGNNNNNCTT 2 cut(s) 24, 56
FatI CATG 2 cut(s) 58, 203
FblI GTMKAC 1 cut(s) 27
Fnu4HI GCNGC 4 cut(s) 98, 101, 180, 231
FokI GGATG 1 cut(s) 185
Fsp4HI GCNGC 4 cut(s) 98, 101, 180, 231
GlaI GCGC 1 cut(s) 50
GluI GCNGC 4 cut(s) 98, 101, 180, 231
HhaI GCGC 1 cut(s) 51
Hin1II CATG 2 cut(s) 62, 207
Hin6I GCGC 1 cut(s) 49
HinP1I GCGC 1 cut(s) 49
HincII GTYRAC 1 cut(s) 156
HindII GTYRAC 1 cut(s) 156
HphI GGTGA 1 cut(s) 287
Hpy166II GTNNAC 3 cut(s) 28, 156, 219
Hpy188III TCNNGA 2 cut(s) 242, 260
Hpy8I GTNNAC 3 cut(s) 28, 156, 219
HpyCH4III ACNGT 2 cut(s) 108, 275
HpyCH4V TGCA 5 cut(s) 89, 100, 125, 179, 287
HpyF10VI GCNNNNNNNGC 1 cut(s) 10
HpyF3I CTNAG 2 cut(s) 22, 41
Hsp92II CATG 2 cut(s) 62, 207
HspAI GCGC 1 cut(s) 49
Kzo9I GATC 1 cut(s) 118
LguI GCTCTTC 1 cut(s) 84
LmnI GCTCC 2 cut(s) 170, 299
LpnPI CCDG 6 cut(s) 27, 135, 154, 168, 181, 273
Lsp1109I GCAGC 4 cut(s) 84, 112, 191, 242
LweI GCATC 1 cut(s) 166
MalI GATC 1 cut(s) 120
MboI GATC 1 cut(s) 118
MboII GAAGA 2 cut(s) 71, 203
MhlI GDGCHC 1 cut(s) 113
MnlI CCTC 2 cut(s) 31, 155
MseI TTAA 3 cut(s) 254, 270, 291
MspR9I CCNGG 2 cut(s) 15, 169
MvaI CCWGG 2 cut(s) 15, 169
MwoI GCNNNNNNNGC 1 cut(s) 10
NdeII GATC 1 cut(s) 118
NlaIII CATG 2 cut(s) 62, 207
NlaIV GGNNCC 2 cut(s) 19, 166
PciSI GCTCTTC 1 cut(s) 84
PkrI GCNGC 4 cut(s) 99, 102, 181, 232
Psp6I CCWGG 2 cut(s) 13, 167
PspGI CCWGG 2 cut(s) 13, 167
PspN4I GGNNCC 2 cut(s) 19, 166
PstI CTGCAG 1 cut(s) 102
PstNI CAGNNNCTG 1 cut(s) 106
RsaI GTAC 1 cut(s) 189
RsaNI GTAC 1 cut(s) 188
SapI GCTCTTC 1 cut(s) 84
SaqAI TTAA 3 cut(s) 254, 270, 291
SatI GCNGC 4 cut(s) 98, 101, 180, 231
Sau3AI GATC 1 cut(s) 118
ScrFI CCNGG 2 cut(s) 15, 169
SduI GDGCHC 1 cut(s) 113
SetI ASST 6 cut(s) 19, 37, 99, 198, 235, 304
SfaNI GCATC 1 cut(s) 166
SfcI CTRYAG 1 cut(s) 98
StyD4I CCNGG 2 cut(s) 13, 167
TaaI ACNGT 2 cut(s) 108, 275
TaqI TCGA 1 cut(s) 241
Tru1I TTAA 3 cut(s) 254, 270, 291
Tru9I TTAA 3 cut(s) 254, 270, 291
TseI GCWGC 4 cut(s) 97, 100, 179, 230
TspDTI ATGAA 2 cut(s) 47, 192
TspGWI ACGGA 1 cut(s) 205
XmiI GTMKAC 1 cut(s) 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.