Rroxscaffold_2G00123890

Protein of unknown function (DUF502)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0021636
Physical Location & Seq
Forward (+)
57836788 .. 57841790
5003 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00123890.1

Sequence Viewer

Length: 615 bp
ATGAGAAATGATGATTTGCCTGAACCACCCAAGGTGGAGCATTACGCTACCGTCGTTGATCTTTTTGGTCGGGCTGGAAACCTGTACAAAGCGGAAGCCTTCGTTAATAGCATGGAAATAGAGCCAGGTGCCTCAGTATATAAAAAGCACTACTTAGTGCGTGCCAAGTTCATGGAAACAGAGAGAACTTGCTCTACGTTCTGCAACAAAACTTCAGCAACTTTTTGTTTTGAGTTTTTTACGAATGATGGGAATCCCGTGTGTGTCTCAAGGCTCTTCGTTTGTGATGCAGGACTTGGATTTATCACATCCTTACTTTTCGTATTCTTTGTTGGCGTCTTTGTTTCCTCATGGATGGGTGCCACTGTTTTCTCTCTTGGAGAATGGATTATAAAGAAAATGCCTTTTGTTAAGCATATCTACTCAGCCTCCAAACAAATTAGTTCCGCAATTTCTCTAGGTGATATATTTCTCGTTAACTCCAAAGATATCATAAGACCAAATCTGTCTATCCGAGAAGGCATAGAAGGCAAGCTCTTCCAGGTGTTGCTCAACGACTTAGGTTTCAAGGTGGCGGTGGCAGATGGTGGGCATTGTTTTCCATGTGGCCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF502

Protein Analysis

204

Amino Acids

22.68

Weight (kDa)

6.94

Isoelectric Point (pI)

34.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF502 PF04367 103 - 152 4.7e-13 Protein of unknown function (DUF502)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021636)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0000593.1_g000002 Rmu_sc0007790.1_g000001
rosa_roxburghii Rroxscaffold_2G00123800 Rroxscaffold_2G00123890
rosa_samantha Rh3DG236800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 392
AccB1I GGYRCC 2 cut(s) 128, 359
AciI CCGC 3 cut(s) 92, 447, 575
AcoI YGGCCR 1 cut(s) 607
AcuI CTGAAG 1 cut(s) 198
AcyI GRCGYC 1 cut(s) 336
AfaI GTAC 1 cut(s) 86
AgsI TTSAA 1 cut(s) 568
AjnI CCWGG 2 cut(s) 124, 540
AluBI AGCT 1 cut(s) 535
AluI AGCT 1 cut(s) 535
Alw26I GTCTC 1 cut(s) 271
AoxI GGCC 1 cut(s) 607
AsuHPI GGTGA 1 cut(s) 473
BalI TGGCCA 1 cut(s) 609
BanI GGYRCC 2 cut(s) 128, 359
BccI CCATC 3 cut(s) 242, 349, 578
BciT130I CCWGG 2 cut(s) 126, 542
BcoDI GTCTC 1 cut(s) 271
BfaI CTAG 1 cut(s) 458
Bme1390I CCNGG 2 cut(s) 126, 542
BmiI GGNNCC 2 cut(s) 130, 361
BmrFI CCNGG 2 cut(s) 126, 542
BmsI GCATC 1 cut(s) 277
BpuEI CTTGAG 1 cut(s) 253
BsaBI GATNNNNATC 1 cut(s) 252
BsaHI GRCGYC 1 cut(s) 336
BsaJI CCNNGG 1 cut(s) 30
BsaXI ACNNNNNCTCC 2 cut(s) 413, 443
Bse8I GATNNNNATC 1 cut(s) 252
BseBI CCWGG 2 cut(s) 126, 542
BseDI CCNNGG 1 cut(s) 30
BseGI GGATG 2 cut(s) 308, 360
BseJI GATNNNNATC 1 cut(s) 252
BseMII CTCAG 2 cut(s) 147, 438
BshFI GGCC 1 cut(s) 609
BshNI GGYRCC 2 cut(s) 128, 359
BsmAI GTCTC 1 cut(s) 271
BsnI GGCC 1 cut(s) 609
Bsp1407I TGTACA 1 cut(s) 84
Bsp143I GATC 1 cut(s) 58
BspACI CCGC 3 cut(s) 92, 447, 575
BspANI GGCC 1 cut(s) 609
BspCNI CTCAG 2 cut(s) 146, 437
BspLI GGNNCC 2 cut(s) 130, 361
BspQI GCTCTTC 2 cut(s) 281, 542
BspT107I GGYRCC 2 cut(s) 128, 359
BsrGI TGTACA 1 cut(s) 84
BssECI CCNNGG 1 cut(s) 30
BssMI GATC 1 cut(s) 58
BssNI GRCGYC 1 cut(s) 336
BssT1I CCWWGG 1 cut(s) 30
Bst2UI CCWGG 2 cut(s) 126, 542
Bst4CI ACNGT 2 cut(s) 52, 367
Bst6I CTCTTC 2 cut(s) 281, 542
BstACI GRCGYC 1 cut(s) 336
BstAUI TGTACA 1 cut(s) 84
BstC8I GCNNGC 2 cut(s) 162, 533
BstDEI CTNAG 4 cut(s) 133, 154, 424, 559
BstF5I GGATG 2 cut(s) 308, 360
BstKTI GATC 1 cut(s) 61
BstMAI GTCTC 1 cut(s) 271
BstMBI GATC 1 cut(s) 58
BstMWI GCNNNNNNNGC 1 cut(s) 528
BstNI CCWGG 2 cut(s) 126, 542
BstSCI CCNGG 2 cut(s) 124, 540
BstXI CCANNNNNNTGG 1 cut(s) 172
BsuRI GGCC 1 cut(s) 609
BtsCI GGATG 2 cut(s) 308, 360
BtsIMutI CAGTG 1 cut(s) 363
Cac8I GCNNGC 2 cut(s) 162, 533
CseI GACGC 1 cut(s) 325
Csp6I GTAC 1 cut(s) 85
CviAII CATG 4 cut(s) 112, 172, 351, 603
CviJI RGCY 7 cut(s) 74, 98, 124, 274, 428, 535, 609
CviKI_1 RGCY 7 cut(s) 74, 98, 124, 274, 428, 535, 609
CviQI GTAC 1 cut(s) 85
DdeI CTNAG 4 cut(s) 133, 154, 424, 559
DpnI GATC 1 cut(s) 60
DpnII GATC 1 cut(s) 58
EaeI YGGCCR 1 cut(s) 607
Eam1104I CTCTTC 2 cut(s) 281, 542
EarI CTCTTC 2 cut(s) 281, 542
Eco130I CCWWGG 1 cut(s) 30
Eco32I GATATC 1 cut(s) 490
Eco57I CTGAAG 1 cut(s) 198
EcoRII CCWGG 2 cut(s) 124, 540
EcoRV GATATC 1 cut(s) 490
EcoT14I CCWWGG 1 cut(s) 30
ErhI CCWWGG 1 cut(s) 30
FaeI CATG 4 cut(s) 115, 175, 354, 606
FalI AAGNNNNNCTT 2 cut(s) 137, 169
FatI CATG 4 cut(s) 111, 171, 350, 602
FokI GGATG 2 cut(s) 295, 367
FspBI CTAG 1 cut(s) 458
HaeIII GGCC 1 cut(s) 609
HgaI GACGC 1 cut(s) 325
Hin1I GRCGYC 1 cut(s) 336
Hin1II CATG 4 cut(s) 115, 175, 354, 606
HincII GTYRAC 1 cut(s) 478
HindII GTYRAC 1 cut(s) 478
HinfI GANTC 1 cut(s) 253
HpaI GTTAAC 1 cut(s) 478
HphI GGTGA 1 cut(s) 473
Hpy166II GTNNAC 1 cut(s) 478
Hpy188I TCNGA 1 cut(s) 515
Hpy8I GTNNAC 1 cut(s) 478
Hpy99I CGWCG 1 cut(s) 56
HpyAV CCTTC 3 cut(s) 109, 512, 521
HpyCH4III ACNGT 2 cut(s) 52, 367
HpyCH4IV ACGT 1 cut(s) 197
HpyCH4V TGCA 2 cut(s) 204, 290
HpyF10VI GCNNNNNNNGC 1 cut(s) 528
HpyF3I CTNAG 4 cut(s) 133, 154, 424, 559
HpySE526I ACGT 1 cut(s) 197
Hsp92I GRCGYC 1 cut(s) 336
Hsp92II CATG 4 cut(s) 115, 175, 354, 606
KspAI GTTAAC 1 cut(s) 478
Kzo9I GATC 1 cut(s) 58
LguI GCTCTTC 2 cut(s) 281, 542
LmnI GCTCC 1 cut(s) 37
LpnPI CCDG 8 cut(s) 33, 60, 95, 111, 138, 276, 527, 554
LweI GCATC 1 cut(s) 277
MaeI CTAG 1 cut(s) 458
MaeII ACGT 1 cut(s) 197
MalI GATC 1 cut(s) 60
MboI GATC 1 cut(s) 58
MboII GAAGA 2 cut(s) 268, 529
MlsI TGGCCA 1 cut(s) 609
MluCI AATT 2 cut(s) 438, 450
MluNI TGGCCA 1 cut(s) 609
MnlI CCTC 3 cut(s) 142, 358, 439
Mox20I TGGCCA 1 cut(s) 609
MscI TGGCCA 1 cut(s) 609
MseI TTAA 3 cut(s) 105, 411, 477
Msp20I TGGCCA 1 cut(s) 609
MspR9I CCNGG 2 cut(s) 126, 542
MvaI CCWGG 2 cut(s) 126, 542
MwoI GCNNNNNNNGC 1 cut(s) 528
NdeII GATC 1 cut(s) 58
NlaIII CATG 4 cut(s) 115, 175, 354, 606
NlaIV GGNNCC 2 cut(s) 130, 361
PciSI GCTCTTC 2 cut(s) 281, 542
PcsI WCGNNNNNNNCGW 1 cut(s) 51
PfeI GAWTC 1 cut(s) 253
PsiI TTATAA 1 cut(s) 392
Psp6I CCWGG 2 cut(s) 124, 540
PspGI CCWGG 2 cut(s) 124, 540
PspN4I GGNNCC 2 cut(s) 130, 361
PsrI GAACNNNNNNTAC 2 cut(s) 178, 210
RsaI GTAC 1 cut(s) 86
RsaNI GTAC 1 cut(s) 85
SapI GCTCTTC 2 cut(s) 281, 542
SaqAI TTAA 3 cut(s) 105, 411, 477
Sau3AI GATC 1 cut(s) 58
ScrFI CCNGG 2 cut(s) 126, 542
SetI ASST 9 cut(s) 36, 84, 130, 200, 463, 537, 546, 565, 573
SfaNI GCATC 1 cut(s) 277
SmlI CTYRAG 1 cut(s) 268
SmoI CTYRAG 1 cut(s) 268
Sse9I AATT 2 cut(s) 438, 450
SsiI CCGC 3 cut(s) 92, 447, 575
SspMI CTAG 1 cut(s) 458
StyD4I CCNGG 2 cut(s) 124, 540
StyI CCWWGG 1 cut(s) 30
TaaI ACNGT 2 cut(s) 52, 367
TaiI ACGT 1 cut(s) 200
TasI AATT 2 cut(s) 438, 450
TatI WGTACW 1 cut(s) 84
TfiI GAWTC 1 cut(s) 253
Tru1I TTAA 3 cut(s) 105, 411, 477
Tru9I TTAA 3 cut(s) 105, 411, 477
TscAI CASTG 1 cut(s) 370
TspDTI ATGAA 1 cut(s) 160
TspRI CASTG 1 cut(s) 370
XspI CTAG 1 cut(s) 458
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.