Rmu_sc0007790.1_g000001

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007790.1
OG0021636
Physical Location & Seq
Forward (+)
1 .. 3233
3233 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007790.1_g000001.1.cds

Sequence Viewer

Length: 455 bp
aggtcaaatcagataataccaccttcctgattgtactaactgcctgcagccatgttggtttgttggacaaagggctcgagtatttcaatctaatgagaaatgatgatttacctgagccacccaaggtggagcattatgctaccgttgttgatctttttgatcgggctggaaaccttcacgaagcggaagccttcgtcaatagcatgccaatagagccaggtgcctcagtaaacaaagctctacttagttcgtgccaagttcatggaaacagaggacttgctcttcgttctgcaacaaagcttcagcaactgtgcccaaatgatcctgcaacttacgtactgctatcaaatgtgttgttgacaagaggctccagggatgttgcagcaggagtacggaagatcatgtgtgatagaggaataagcaagctagaacatgcatttgtaaatcacgtctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 Pkinase_Tyr

Protein Analysis

150

Amino Acids

16.38

Weight (kDa)

6.63

Isoelectric Point (pI)

35.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021636)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0000593.1_g000002 Rmu_sc0007790.1_g000001
rosa_roxburghii Rroxscaffold_2G00123800 Rroxscaffold_2G00123890
rosa_samantha Rh3DG236800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 220
AciI CCGC 1 cut(s) 184
AclWI GGATC 1 cut(s) 316
AcuI CTGAAG 1 cut(s) 286
AfaI GTAC 3 cut(s) 35, 338, 392
AgsI TTSAA 1 cut(s) 87
AjiI CACGTC 1 cut(s) 450
AjnI CCWGG 2 cut(s) 216, 370
AluBI AGCT 3 cut(s) 238, 300, 426
AluI AGCT 3 cut(s) 238, 300, 426
AlwI GGATC 1 cut(s) 316
AlwNI CAGNNNCTG 1 cut(s) 309
Ama87I CYCGRG 1 cut(s) 76
ApeKI GCWGC 2 cut(s) 47, 382
ArsI GACNNNNNNTTYG 2 cut(s) 266, 298
AvaI CYCGRG 1 cut(s) 76
BaeGI GKGCMC 1 cut(s) 316
BanI GGYRCC 1 cut(s) 220
BanII GRGCYC 1 cut(s) 77
BbvI GCAGC 2 cut(s) 59, 394
BciT130I CCWGG 2 cut(s) 218, 372
BfaI CTAG 1 cut(s) 427
BfmI CTRYAG 1 cut(s) 45
BisI GCNGC 2 cut(s) 48, 383
BlsI GCNGC 2 cut(s) 49, 384
Bme1390I CCNGG 2 cut(s) 218, 372
BmeT110I CYCGRG 1 cut(s) 76
BmgBI CACGTC 1 cut(s) 450
BmiI GGNNCC 2 cut(s) 222, 369
BmrFI CCNGG 2 cut(s) 218, 372
BpmI CTGGAG 1 cut(s) 354
Bpu10I CCTNAGC 1 cut(s) 113
BsaAI YACGTR 1 cut(s) 336
BsaJI CCNNGG 2 cut(s) 122, 371
BseBI CCWGG 2 cut(s) 218, 372
BseDI CCNNGG 2 cut(s) 122, 371
BseGI GGATG 1 cut(s) 381
BseMII CTCAG 2 cut(s) 104, 239
BseSI GKGCMC 1 cut(s) 316
BseXI GCAGC 2 cut(s) 59, 394
BshNI GGYRCC 1 cut(s) 220
BsiHKCI CYCGRG 1 cut(s) 76
BsoBI CYCGRG 1 cut(s) 76
Bsp1286I GDGCHC 2 cut(s) 77, 316
Bsp143I GATC 4 cut(s) 150, 159, 321, 398
BspACI CCGC 1 cut(s) 184
BspCNI CTCAG 2 cut(s) 105, 238
BspLI GGNNCC 2 cut(s) 222, 369
BspMAI CTGCAG 1 cut(s) 49
BspPI GGATC 1 cut(s) 316
BspQI GCTCTTC 1 cut(s) 287
BspT107I GGYRCC 1 cut(s) 220
BssECI CCNNGG 2 cut(s) 122, 371
BssMI GATC 4 cut(s) 150, 159, 321, 398
BssT1I CCWWGG 1 cut(s) 122
Bst2UI CCWGG 2 cut(s) 218, 372
Bst4CI ACNGT 2 cut(s) 144, 311
Bst6I CTCTTC 1 cut(s) 287
BstBAI YACGTR 1 cut(s) 336
BstC8I GCNNGC 3 cut(s) 45, 205, 424
BstDEI CTNAG 3 cut(s) 113, 225, 244
BstF5I GGATG 1 cut(s) 381
BstKTI GATC 4 cut(s) 153, 162, 324, 401
BstMBI GATC 4 cut(s) 150, 159, 321, 398
BstMWI GCNNNNNNNGC 1 cut(s) 213
BstNI CCWGG 2 cut(s) 218, 372
BstNSI RCATGY 2 cut(s) 207, 436
BstSCI CCNGG 2 cut(s) 216, 370
BstSFI CTRYAG 1 cut(s) 45
BstSLI GKGCMC 1 cut(s) 316
BstSNI TACGTA 1 cut(s) 336
BstV1I GCAGC 2 cut(s) 59, 394
BstXI CCANNNNNNTGG 1 cut(s) 262
BtrI CACGTC 1 cut(s) 450
BtsCI GGATG 1 cut(s) 381
Cac8I GCNNGC 3 cut(s) 45, 205, 424
CaiI CAGNNNCTG 1 cut(s) 309
Csp6I GTAC 3 cut(s) 34, 337, 391
CviAII CATG 5 cut(s) 52, 204, 262, 402, 433
CviQI GTAC 3 cut(s) 34, 337, 391
DdeI CTNAG 3 cut(s) 113, 225, 244
DpnI GATC 4 cut(s) 152, 161, 323, 400
DpnII GATC 4 cut(s) 150, 159, 321, 398
Eam1104I CTCTTC 1 cut(s) 287
EarI CTCTTC 1 cut(s) 287
Eco105I TACGTA 1 cut(s) 336
Eco130I CCWWGG 1 cut(s) 122
Eco24I GRGCYC 1 cut(s) 77
Eco57I CTGAAG 1 cut(s) 286
Eco88I CYCGRG 1 cut(s) 76
EcoRII CCWGG 2 cut(s) 216, 370
EcoT14I CCWWGG 1 cut(s) 122
EcoT22I ATGCAT 1 cut(s) 438
EcoT38I GRGCYC 1 cut(s) 77
ErhI CCWWGG 1 cut(s) 122
FaeI CATG 5 cut(s) 55, 207, 265, 405, 436
FaiI YATR 6 cut(s) 53, 137, 205, 263, 403, 434
FalI AAGNNNNNCTT 2 cut(s) 227, 259
FatI CATG 5 cut(s) 51, 203, 261, 401, 432
Fnu4HI GCNGC 2 cut(s) 48, 383
FokI GGATG 1 cut(s) 388
FriOI GRGCYC 1 cut(s) 77
Fsp4HI GCNGC 2 cut(s) 48, 383
FspBI CTAG 1 cut(s) 427
GluI GCNGC 2 cut(s) 48, 383
GsuI CTGGAG 1 cut(s) 354
Hin1II CATG 5 cut(s) 55, 207, 265, 405, 436
HincII GTYRAC 1 cut(s) 359
HindII GTYRAC 1 cut(s) 359
HindIII AAGCTT 1 cut(s) 298
Hpy166II GTNNAC 2 cut(s) 231, 359
Hpy188I TCNGA 2 cut(s) 12, 454
Hpy188III TCNNGA 2 cut(s) 27, 178
Hpy8I GTNNAC 2 cut(s) 231, 359
HpyAV CCTTC 3 cut(s) 33, 184, 201
HpyCH4III ACNGT 2 cut(s) 144, 311
HpyCH4IV ACGT 2 cut(s) 335, 449
HpyCH4V TGCA 5 cut(s) 47, 292, 328, 382, 436
HpyF10VI GCNNNNNNNGC 1 cut(s) 213
HpyF3I CTNAG 3 cut(s) 113, 225, 244
HpySE526I ACGT 2 cut(s) 335, 449
Hsp92II CATG 5 cut(s) 55, 207, 265, 405, 436
Kzo9I GATC 4 cut(s) 150, 159, 321, 398
LguI GCTCTTC 1 cut(s) 287
LmnI GCTCC 2 cut(s) 129, 373
Lsp1109I GCAGC 2 cut(s) 59, 394
MaeI CTAG 1 cut(s) 427
MaeII ACGT 2 cut(s) 335, 449
MalI GATC 4 cut(s) 152, 161, 323, 400
MboI GATC 4 cut(s) 150, 159, 321, 398
MboII GAAGA 2 cut(s) 274, 408
MhlI GDGCHC 2 cut(s) 77, 316
MmeI TCCRAC 1 cut(s) 44
MnlI CCTC 4 cut(s) 234, 265, 358, 406
Mph1103I ATGCAT 1 cut(s) 438
MspR9I CCNGG 2 cut(s) 218, 372
MvaI CCWGG 2 cut(s) 218, 372
MwoI GCNNNNNNNGC 1 cut(s) 213
NdeII GATC 4 cut(s) 150, 159, 321, 398
NlaIII CATG 5 cut(s) 55, 207, 265, 405, 436
NlaIV GGNNCC 2 cut(s) 222, 369
NsiI ATGCAT 1 cut(s) 438
NspI RCATGY 2 cut(s) 207, 436
PaeI GCATGC 1 cut(s) 207
PaeR7I CTCGAG 1 cut(s) 76
PciSI GCTCTTC 1 cut(s) 287
PkrI GCNGC 2 cut(s) 49, 384
Ppu21I YACGTR 1 cut(s) 336
Psp6I CCWGG 2 cut(s) 216, 370
PspGI CCWGG 2 cut(s) 216, 370
PspN4I GGNNCC 2 cut(s) 222, 369
PspXI VCTCGAGB 1 cut(s) 76
PstI CTGCAG 1 cut(s) 49
PstNI CAGNNNCTG 1 cut(s) 309
RsaI GTAC 3 cut(s) 35, 338, 392
RsaNI GTAC 3 cut(s) 34, 337, 391
SapI GCTCTTC 1 cut(s) 287
SatI GCNGC 2 cut(s) 48, 383
Sau3AI GATC 4 cut(s) 150, 159, 321, 398
ScrFI CCNGG 2 cut(s) 218, 372
SduI GDGCHC 2 cut(s) 77, 316
SfcI CTRYAG 1 cut(s) 45
Sfr274I CTCGAG 1 cut(s) 76
SlaI CTCGAG 1 cut(s) 76
SmlI CTYRAG 1 cut(s) 76
SmoI CTYRAG 1 cut(s) 76
SnaBI TACGTA 1 cut(s) 336
SphI GCATGC 1 cut(s) 207
SsiI CCGC 1 cut(s) 184
SspMI CTAG 1 cut(s) 427
StyD4I CCNGG 2 cut(s) 216, 370
StyI CCWWGG 1 cut(s) 122
TaaI ACNGT 2 cut(s) 144, 311
TaiI ACGT 2 cut(s) 338, 452
TaqI TCGA 1 cut(s) 77
TatI WGTACW 1 cut(s) 33
TseI GCWGC 2 cut(s) 47, 382
TspDTI ATGAA 1 cut(s) 250
TspGWI ACGGA 1 cut(s) 408
XceI RCATGY 2 cut(s) 207, 436
XhoI CTCGAG 1 cut(s) 76
XspI CTAG 1 cut(s) 427
Zsp2I ATGCAT 1 cut(s) 438
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.