Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000712.1

Orthogroup ID

OG0021044

Physical Location & Seq

Genomic Coordinates Forward (+)

19821 .. 21209

Gene Structure 1389 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000712.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

atgtgcagaaacttagcgaaaaatgagctcacaggttcagttcctgccgggcttatagcaaaaacaaaggatggtttgtcgttgagaggtgaggatacacgcaaaggttttgcacgtaatctgtacgaagctttagaggaaaaaggaatcaagacattttttgatgatgaaaagctcaagccgggagatgaaatagcacctgcacttctcgatgcaatagaagcatcaaagatttcggtcattataatctcagaaaactatgcttcgtcaagttggtgtttgggggaacttgttaagatccttgattgtaaaaagtcaaagcatcaacgtgttatcccatttttttacaatgtggatccatcacacgtacgacatcaatctggtagtttttcccttgagaagtggacagagagaaaggagcttcccgcatggcagaaagctcttaccgaagtagcaagtttggcgggaattcataaaacgaacgagtatgaatctaaaacgattggcgacattgttaaacaaatatcagatgtcaacgagcaaaagaagaaagaagctggaaactcagttgatgggttcgacaaaatatccccacaagcggtggccgggtcagtcagcgtctcagaaacaaagagcgatggatctggtggttcaccagtttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_3 NB-ARC TIR

Protein Analysis

220

Amino Acids

24.01

Weight (kDa)

6.46

Isoelectric Point (pI)

37.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021044)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g21280
rosa_laevigata	RLG00000033693 RLG00000033696
rosa_multiflora	Rmu_sc0000712.1_g000004
rosa_rugosa	Rorug05G0156600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	245
AarI	CACCTGC	1 cut(s)	208
Acc36I	ACCTGC	1 cut(s)	208
AciI	CCGC	3 cut(s)	426, 464, 599
AclWI	GGATC	4 cut(s)	292, 350, 363, 649
AcoI	YGGCCR	1 cut(s)	603
AcsI	RAATTY	1 cut(s)	468
AfaI	GTAC	2 cut(s)	125, 369
AfiI	CCNNNNNNNGG	1 cut(s)	598
AflIII	ACRYGT	2 cut(s)	328, 364
AluBI	AGCT	6 cut(s)	28, 131, 175, 421, 440, 557
AluI	AGCT	6 cut(s)	28, 131, 175, 421, 440, 557
Alw21I	GWGCWC	1 cut(s)	30
Alw26I	GTCTC	1 cut(s)	625
AlwI	GGATC	4 cut(s)	292, 350, 363, 649
AlwNI	CAGNNNCTG	1 cut(s)	44
AoxI	GGCC	1 cut(s)	603
ApoI	RAATTY	1 cut(s)	468
AsuC2I	CCSGG	3 cut(s)	49, 183, 607
AsuHPI	GGTGA	2 cut(s)	101, 645
BamHI	GGATCC	1 cut(s)	355
BanII	GRGCYC	1 cut(s)	30
Bbv12I	GWGCWC	1 cut(s)	30
BccI	CCATC	4 cut(s)	65, 367, 566, 632
BciVI	GTATCC	1 cut(s)	88
BcnI	CCSGG	3 cut(s)	49, 183, 607
BcoDI	GTCTC	1 cut(s)	625
BfuAI	ACCTGC	1 cut(s)	208
BfuI	GTATCC	1 cut(s)	88
Bme1390I	CCNGG	3 cut(s)	49, 183, 607
BmiI	GGNNCC	1 cut(s)	357
BmrFI	CCNGG	3 cut(s)	49, 183, 607
BmsI	GCATC	3 cut(s)	202, 233, 331
BpuEI	CTTGAG	2 cut(s)	161, 416
BpuMI	CCSGG	3 cut(s)	49, 183, 607
BsaAI	YACGTR	2 cut(s)	116, 367
Bsc4I	CCNNNNNNNGG	1 cut(s)	598
Bse1I	ACTGG	1 cut(s)	656
BseGI	GGATG	1 cut(s)	76
BseLI	CCNNNNNNNGG	1 cut(s)	598
BseMII	CTCAG	3 cut(s)	264, 579, 636
BseNI	ACTGG	1 cut(s)	656
BsgI	GTGCAG	2 cut(s)	25, 186
BshFI	GGCC	1 cut(s)	605
BsiHKAI	GWGCWC	1 cut(s)	30
BsiSI	CCGG	3 cut(s)	48, 182, 606
BsiWI	CGTACG	1 cut(s)	367
BslI	CCNNNNNNNGG	1 cut(s)	598
BsmAI	GTCTC	1 cut(s)	625
BsmBI	CGTCTC	1 cut(s)	625
BsnI	GGCC	1 cut(s)	605
Bsp1286I	GDGCHC	1 cut(s)	30
Bsp143I	GATC	3 cut(s)	297, 355, 641
BspACI	CCGC	3 cut(s)	426, 464, 599
BspANI	GGCC	1 cut(s)	605
BspCNI	CTCAG	3 cut(s)	263, 578, 635
BspLI	GGNNCC	1 cut(s)	357
BspMI	ACCTGC	1 cut(s)	208
BspPI	GGATC	4 cut(s)	292, 350, 363, 649
BsrI	ACTGG	1 cut(s)	656
BssMI	GATC	3 cut(s)	297, 355, 641
BstBAI	YACGTR	2 cut(s)	116, 367
BstDEI	CTNAG	4 cut(s)	13, 250, 565, 622
BstF5I	GGATG	1 cut(s)	76
BstKTI	GATC	3 cut(s)	300, 358, 644
BstMAI	GTCTC	1 cut(s)	625
BstMBI	GATC	3 cut(s)	297, 355, 641
BstMWI	GCNNNNNNNGC	2 cut(s)	221, 461
BstSCI	CCNGG	3 cut(s)	47, 181, 605
BstX2I	RGATCY	3 cut(s)	297, 355, 641
BstYI	RGATCY	3 cut(s)	297, 355, 641
BsuI	GTATCC	1 cut(s)	88
BsuRI	GGCC	1 cut(s)	605
BtgZI	GCGATG	1 cut(s)	651
BtsCI	GGATG	1 cut(s)	76
BveI	ACCTGC	1 cut(s)	208
CaiI	CAGNNNCTG	1 cut(s)	44
CseI	GACGC	1 cut(s)	607
Csp6I	GTAC	2 cut(s)	124, 368
CviAII	CATG	1 cut(s)	429
CviJI	RGCY	9 cut(s)	28, 52, 131, 175, 181, 421, 440, 557, 605
CviKI_1	RGCY	9 cut(s)	28, 52, 131, 175, 181, 421, 440, 557, 605
CviQI	GTAC	2 cut(s)	124, 368
DdeI	CTNAG	4 cut(s)	13, 250, 565, 622
DpnI	GATC	3 cut(s)	299, 357, 643
DpnII	GATC	3 cut(s)	297, 355, 641
EaeI	YGGCCR	1 cut(s)	603
Ecl136II	GAGCTC	1 cut(s)	28
Eco24I	GRGCYC	1 cut(s)	30
Eco53kI	GAGCTC	1 cut(s)	28
EcoICRI	GAGCTC	1 cut(s)	28
EcoRI	GAATTC	1 cut(s)	468
EcoT38I	GRGCYC	1 cut(s)	30
Esp3I	CGTCTC	1 cut(s)	625
FaeI	CATG	1 cut(s)	432
FaiI	YATR	6 cut(s)	56, 245, 261, 430, 474, 489
FatI	CATG	1 cut(s)	428
FauI	CCCGC	2 cut(s)	433, 457
FokI	GGATG	1 cut(s)	83
FriOI	GRGCYC	1 cut(s)	30
HaeIII	GGCC	1 cut(s)	605
HapII	CCGG	3 cut(s)	48, 182, 606
HgaI	GACGC	1 cut(s)	607
Hin1II	CATG	1 cut(s)	432
HincII	GTYRAC	1 cut(s)	535
HindII	GTYRAC	1 cut(s)	535
HindIII	AAGCTT	1 cut(s)	129
HinfI	GANTC	2 cut(s)	147, 491
HpaII	CCGG	3 cut(s)	48, 182, 606
HphI	GGTGA	2 cut(s)	101, 645
Hpy166II	GTNNAC	3 cut(s)	405, 535, 653
Hpy188I	TCNGA	3 cut(s)	253, 529, 625
Hpy188III	TCNNGA	2 cut(s)	151, 209
Hpy8I	GTNNAC	3 cut(s)	405, 535, 653
HpyCH4IV	ACGT	3 cut(s)	115, 328, 366
HpyCH4V	TGCA	4 cut(s)	6, 113, 203, 215
HpyF10VI	GCNNNNNNNGC	2 cut(s)	221, 461
HpyF3I	CTNAG	4 cut(s)	13, 250, 565, 622
HpySE526I	ACGT	3 cut(s)	115, 328, 366
Hsp92II	CATG	1 cut(s)	432
Kzo9I	GATC	3 cut(s)	297, 355, 641
LmnI	GCTCC	1 cut(s)	418
LpnPI	CCDG	9 cut(s)	18, 57, 61, 195, 213, 366, 543, 619, 630
LweI	GCATC	3 cut(s)	202, 233, 331
MaeII	ACGT	3 cut(s)	115, 328, 366
MalI	GATC	3 cut(s)	299, 357, 643
MboI	GATC	3 cut(s)	297, 355, 641
MboII	GAAGA	1 cut(s)	559
MflI	RGATCY	3 cut(s)	297, 355, 641
MhlI	GDGCHC	1 cut(s)	30
MluCI	AATT	1 cut(s)	468
MnlI	CCTC	3 cut(s)	80, 85, 130
MseI	TTAA	3 cut(s)	294, 516, 661
MslI	CAYNNNNRTG	1 cut(s)	327
MspI	CCGG	3 cut(s)	48, 182, 606
MspR9I	CCNGG	3 cut(s)	49, 183, 607
MwoI	GCNNNNNNNGC	2 cut(s)	221, 461
NciI	CCSGG	3 cut(s)	49, 183, 607
NdeII	GATC	3 cut(s)	297, 355, 641
NlaIII	CATG	1 cut(s)	432
NlaIV	GGNNCC	1 cut(s)	357
PaqCI	CACCTGC	1 cut(s)	208
PfeI	GAWTC	2 cut(s)	147, 491
Pfl23II	CGTACG	1 cut(s)	367
Ppu21I	YACGTR	2 cut(s)	116, 367
PsiI	TTATAA	1 cut(s)	245
Psp124BI	GAGCTC	1 cut(s)	30
PspLI	CGTACG	1 cut(s)	367
PspN4I	GGNNCC	1 cut(s)	357
PstNI	CAGNNNCTG	1 cut(s)	44
PsuI	RGATCY	3 cut(s)	297, 355, 641
RsaI	GTAC	2 cut(s)	125, 369
RsaNI	GTAC	2 cut(s)	124, 368
RseI	CAYNNNNRTG	1 cut(s)	327
SacI	GAGCTC	1 cut(s)	30
SaqAI	TTAA	3 cut(s)	294, 516, 661
Sau3AI	GATC	3 cut(s)	297, 355, 641
ScrFI	CCNGG	3 cut(s)	49, 183, 607
SduI	GDGCHC	1 cut(s)	30
SfaNI	GCATC	3 cut(s)	202, 233, 331
SmiMI	CAYNNNNRTG	1 cut(s)	327
SmlI	CTYRAG	2 cut(s)	176, 395
SmoI	CTYRAG	2 cut(s)	176, 395
Sse9I	AATT	1 cut(s)	468
SsiI	CCGC	3 cut(s)	426, 464, 599
SstI	GAGCTC	1 cut(s)	30
StyD4I	CCNGG	3 cut(s)	47, 181, 605
TaiI	ACGT	3 cut(s)	118, 331, 369
TaqI	TCGA	2 cut(s)	210, 579
TaqII	GACCGA	1 cut(s)	226
TasI	AATT	1 cut(s)	468
TfiI	GAWTC	2 cut(s)	147, 491
Tru1I	TTAA	3 cut(s)	294, 516, 661
Tru9I	TTAA	3 cut(s)	294, 516, 661
TspDTI	ATGAA	4 cut(s)	183, 204, 461, 504
XapI	RAATTY	1 cut(s)	468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.