Rmu_sc0000750.1_g000002

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000750.1
OG0020725
Physical Location & Seq
Reverse (-)
18188 .. 19909
1722 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 540 bp
atgttcaacttggtcaatctctttgggccagtgattagggctgcacacggatttgattggatcggatttgactccaaaccgtttctatgccaaagtgagcggtttaggcattttggaaaaccgataaaacttgattatccaaacgaagttctaactggtgtttccggatatattgacattccatggtccttctttcccgagttgacccttactcgcttaattactttcaaaagcaacaacagaatatacgggccttttggagctgaaacaggaaagtacttttcattggctgagactggaaccatgattgttgggttttatgggtggtcagaacctaggcattgtattcgttctggtattcgtaaaataggactttggattgagacttttaattcttatgagatcagtcgatcaaaggatctgttaccggctgggtatttcttgcagagcaagctcaaggaagacgacgacgacacgaaaattgtgatctccgataacaaggtcattggaaacaaaggcaaggcaatgaaaaatttgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jacalin

Protein Analysis

179

Amino Acids

20.43

Weight (kDa)

9.02

Isoelectric Point (pI)

33.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Jacalin PF01419 40 - 111 2.3e-13 Jacalin-like lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020725)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0000750.1_g000002
rosa_samantha Rh4AG201000 Rh4BG198200 Rh4CG212000 Rh4DG198300
rosa_wichuraiana Rw0G019000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 100
AccIII TCCGGA 1 cut(s) 164
AciI CCGC 1 cut(s) 100
AclWI GGATC 2 cut(s) 68, 426
AcsI RAATTY 1 cut(s) 532
AfaI GTAC 1 cut(s) 278
AgsI TTSAA 2 cut(s) 7, 229
AluBI AGCT 2 cut(s) 263, 454
AluI AGCT 2 cut(s) 263, 454
Alw26I GTCTC 2 cut(s) 287, 377
AlwI GGATC 2 cut(s) 68, 426
Ama87I CYCGRG 1 cut(s) 197
Aor13HI TCCGGA 1 cut(s) 164
AoxI GGCC 2 cut(s) 26, 251
ApeKI GCWGC 1 cut(s) 41
ApoI RAATTY 1 cut(s) 532
AspA2I CCTAGG 1 cut(s) 335
AspS9I GGNCC 3 cut(s) 26, 186, 251
AvaI CYCGRG 1 cut(s) 197
AvaII GGWCC 1 cut(s) 186
AvrII CCTAGG 1 cut(s) 335
BbsI GAAGAC 1 cut(s) 468
BbvI GCAGC 1 cut(s) 28
BcgI CGANNNNNNTGC 2 cut(s) 329, 363
BcoDI GTCTC 2 cut(s) 287, 377
BfaI CTAG 1 cut(s) 336
BisI GCNGC 1 cut(s) 42
BlnI CCTAGG 1 cut(s) 335
BlsI GCNGC 1 cut(s) 43
BmcAI AGTACT 1 cut(s) 278
Bme18I GGWCC 1 cut(s) 186
BmeT110I CYCGRG 1 cut(s) 197
BmgT120I GGNCC 3 cut(s) 26, 186, 251
BmiI GGNNCC 1 cut(s) 301
BpiI GAAGAC 1 cut(s) 468
BpuEI CTTGAG 1 cut(s) 440
BsaJI CCNNGG 2 cut(s) 182, 335
BsaWI WCCGGW 1 cut(s) 164
Bse118I RCCGGY 1 cut(s) 427
Bse1I ACTGG 3 cut(s) 29, 160, 301
Bse3DI GCAATG 1 cut(s) 531
BseAI TCCGGA 1 cut(s) 164
BseDI CCNNGG 2 cut(s) 182, 335
BseMI GCAATG 1 cut(s) 531
BseMII CTCAG 1 cut(s) 282
BseNI ACTGG 3 cut(s) 29, 160, 301
BseXI GCAGC 1 cut(s) 28
BseYI CCCAGC 1 cut(s) 431
BsgI GTGCAG 1 cut(s) 27
BshFI GGCC 2 cut(s) 28, 253
BsiHKCI CYCGRG 1 cut(s) 197
BsiSI CCGG 2 cut(s) 165, 428
BsmAI GTCTC 2 cut(s) 287, 377
BsnI GGCC 2 cut(s) 28, 253
BsoBI CYCGRG 1 cut(s) 197
Bsp13I TCCGGA 1 cut(s) 164
Bsp143I GATC 5 cut(s) 60, 402, 410, 418, 486
Bsp19I CCATGG 1 cut(s) 182
BspACI CCGC 1 cut(s) 100
BspANI GGCC 2 cut(s) 28, 253
BspCNI CTCAG 1 cut(s) 283
BspEI TCCGGA 1 cut(s) 164
BspLI GGNNCC 1 cut(s) 301
BspPI GGATC 2 cut(s) 68, 426
BsrBI CCGCTC 1 cut(s) 100
BsrDI GCAATG 1 cut(s) 531
BsrFI RCCGGY 1 cut(s) 427
BsrI ACTGG 3 cut(s) 29, 160, 301
BssAI RCCGGY 1 cut(s) 427
BssECI CCNNGG 2 cut(s) 182, 335
BssMI GATC 5 cut(s) 60, 402, 410, 418, 486
BssT1I CCWWGG 2 cut(s) 182, 335
Bst4CI ACNGT 1 cut(s) 81
BstC8I GCNNGC 1 cut(s) 452
BstDEI CTNAG 1 cut(s) 291
BstDSI CCRYGG 1 cut(s) 182
BstKTI GATC 5 cut(s) 63, 405, 413, 421, 489
BstMAI GTCTC 2 cut(s) 287, 377
BstMBI GATC 5 cut(s) 60, 402, 410, 418, 486
BstMWI GCNNNNNNNGC 2 cut(s) 106, 451
BstV1I GCAGC 1 cut(s) 28
BstV2I GAAGAC 1 cut(s) 468
BstX2I RGATCY 1 cut(s) 418
BstYI RGATCY 1 cut(s) 418
BsuRI GGCC 2 cut(s) 28, 253
BtgI CCRYGG 1 cut(s) 182
BtsIMutI CAGTG 1 cut(s) 36
Cac8I GCNNGC 1 cut(s) 452
Cfr10I RCCGGY 1 cut(s) 427
Cfr13I GGNCC 3 cut(s) 26, 186, 251
Csp6I GTAC 1 cut(s) 277
CviAII CATG 2 cut(s) 183, 304
CviJI RGCY 7 cut(s) 28, 41, 253, 263, 290, 431, 454
CviKI_1 RGCY 7 cut(s) 28, 41, 253, 263, 290, 431, 454
CviQI GTAC 1 cut(s) 277
DdeI CTNAG 1 cut(s) 291
DpnI GATC 5 cut(s) 62, 404, 412, 420, 488
DpnII GATC 5 cut(s) 60, 402, 410, 418, 486
Eco130I CCWWGG 2 cut(s) 182, 335
Eco47I GGWCC 1 cut(s) 186
Eco88I CYCGRG 1 cut(s) 197
EcoT14I CCWWGG 2 cut(s) 182, 335
ErhI CCWWGG 2 cut(s) 182, 335
FaeI CATG 2 cut(s) 186, 307
FaiI YATR 7 cut(s) 88, 171, 184, 247, 305, 321, 399
FatI CATG 2 cut(s) 182, 303
Fnu4HI GCNGC 1 cut(s) 42
Fsp4HI GCNGC 1 cut(s) 42
FspBI CTAG 1 cut(s) 336
GluI GCNGC 1 cut(s) 42
GsaI CCCAGC 1 cut(s) 435
HaeIII GGCC 2 cut(s) 28, 253
HapII CCGG 2 cut(s) 165, 428
Hin1II CATG 2 cut(s) 186, 307
HincII GTYRAC 1 cut(s) 204
HindII GTYRAC 1 cut(s) 204
HinfI GANTC 1 cut(s) 71
HpaII CCGG 2 cut(s) 165, 428
Hpy166II GTNNAC 1 cut(s) 204
Hpy188I TCNGA 3 cut(s) 65, 331, 493
Hpy188III TCNNGA 2 cut(s) 165, 197
Hpy8I GTNNAC 1 cut(s) 204
Hpy99I CGWCG 2 cut(s) 470, 473
HpyAV CCTTC 1 cut(s) 199
HpyCH4III ACNGT 1 cut(s) 81
HpyCH4V TGCA 2 cut(s) 44, 445
HpyF10VI GCNNNNNNNGC 2 cut(s) 106, 451
HpyF3I CTNAG 1 cut(s) 291
Hsp92II CATG 2 cut(s) 186, 307
Kpn2I TCCGGA 1 cut(s) 164
Kzo9I GATC 5 cut(s) 60, 402, 410, 418, 486
LmnI GCTCC 1 cut(s) 260
LpnPI CCDG 8 cut(s) 42, 141, 178, 255, 282, 339, 417, 441
Lsp1109I GCAGC 1 cut(s) 28
MaeI CTAG 1 cut(s) 336
MaeIII GTNAC 1 cut(s) 423
MalI GATC 5 cut(s) 62, 404, 412, 420, 488
MbiI CCGCTC 1 cut(s) 100
MboI GATC 5 cut(s) 60, 402, 410, 418, 486
MboII GAAGA 1 cut(s) 473
MflI RGATCY 1 cut(s) 418
MluCI AATT 4 cut(s) 219, 391, 480, 532
MlyI GAGTC 1 cut(s) 65
MroI TCCGGA 1 cut(s) 164
MseI TTAA 2 cut(s) 218, 390
MspI CCGG 2 cut(s) 165, 428
MwoI GCNNNNNNNGC 2 cut(s) 106, 451
NcoI CCATGG 1 cut(s) 182
NdeII GATC 5 cut(s) 60, 402, 410, 418, 486
NlaIII CATG 2 cut(s) 186, 307
NlaIV GGNNCC 1 cut(s) 301
PkrI GCNGC 1 cut(s) 43
PleI GAGTC 1 cut(s) 65
PpsI GAGTC 1 cut(s) 65
PspFI CCCAGC 1 cut(s) 431
PspN4I GGNNCC 1 cut(s) 301
PspPI GGNCC 3 cut(s) 26, 186, 251
PsuI RGATCY 1 cut(s) 418
RsaI GTAC 1 cut(s) 278
RsaNI GTAC 1 cut(s) 277
SaqAI TTAA 2 cut(s) 218, 390
SatI GCNGC 1 cut(s) 42
Sau3AI GATC 5 cut(s) 60, 402, 410, 418, 486
Sau96I GGNCC 3 cut(s) 26, 186, 251
ScaI AGTACT 1 cut(s) 278
SchI GAGTC 1 cut(s) 65
SetI ASST 4 cut(s) 265, 337, 456, 504
SinI GGWCC 1 cut(s) 186
SmlI CTYRAG 1 cut(s) 455
SmoI CTYRAG 1 cut(s) 455
Sse9I AATT 4 cut(s) 219, 391, 480, 532
SsiI CCGC 1 cut(s) 100
SspMI CTAG 1 cut(s) 336
StyI CCWWGG 2 cut(s) 182, 335
TaaI ACNGT 1 cut(s) 81
TaqI TCGA 1 cut(s) 409
TasI AATT 4 cut(s) 219, 391, 480, 532
TatI WGTACW 1 cut(s) 276
Tru1I TTAA 2 cut(s) 218, 390
Tru9I TTAA 2 cut(s) 218, 390
TscAI CASTG 1 cut(s) 36
TseI GCWGC 1 cut(s) 41
TspDTI ATGAA 1 cut(s) 273
TspGWI ACGGA 1 cut(s) 63
TspRI CASTG 1 cut(s) 36
VpaK11BI GGWCC 1 cut(s) 186
XapI RAATTY 1 cut(s) 532
XmaJI CCTAGG 1 cut(s) 335
XspI CTAG 1 cut(s) 336
ZrmI AGTACT 1 cut(s) 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.