Rw0G019000

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00855
OG0020725
Physical Location & Seq
Forward (+)
16737 .. 25543
8807 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G019000.1

Sequence Viewer

Length: 690 bp
ATGAACCTGATAAGGTTGATTGGTGGGTCGAGTAAAGAAATAGGCCCTGGGGAACCTTTTGATGATGGCAGTCACTTGGGAGTTATGGAGTTGGTGATACGTTATACATCGTGGCTAGACTTCATTCAAATCAAATACGATGATGGCAATGGGATCTCATCTTGGTCGGAGAGGCGTGGTTGCCATAATGCTCACTGCCCTGGTGGTGAAGTTACCAAGATAAAACTTGATTATCCAGACGAAGTTCTAACTGGAGTTTCCGGATATATTGACATTCCATGGTCCTTCTTTCCCGAGTTGACCCTTACTCGCTCAATTACTTTCAAAAGCAACAAAAGAATATACGGGCCTTTTGGAGCTGAAACAGGAAAGTACTTTTCATTGGCTGAGACTGGAACCATGATTGTTGGGTTTTGTGGCTGGTCAGAACCTAGGCATTGTATTCGTTCTGGTATTCGTAAAATAGGACTTTGGATTGAGACTTTTAATTCTTATGAGATCAGTCCATCAAAGGATCTGTTACCGGCTGGGTATTTCTTGCAGAGCAAGCTCAAGGAAGACGACGACGACACCAAAATTGTGATCTCCGATAACAAGGTCATTGGAAACAAAGGCAAAGGCAATGGAAAATTTGTTGTCGGAAAAAGGACTACTAAGAATATTACTAATCTACATATTCGGCTACTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jacalin

Protein Analysis

229

Amino Acids

25.57

Weight (kDa)

8.26

Isoelectric Point (pI)

37.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Jacalin PF01419 17 - 143 3.6e-23 Jacalin-like lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020725)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0000750.1_g000002
rosa_samantha Rh4AG201000 Rh4BG198200 Rh4CG212000 Rh4DG198300
rosa_wichuraiana Rw0G019000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 260
AclWI GGATC 2 cut(s) 161, 522
AcsI RAATTY 1 cut(s) 629
AfaI GTAC 1 cut(s) 374
AgsI TTSAA 2 cut(s) 128, 325
AjnI CCWGG 2 cut(s) 46, 199
AluBI AGCT 2 cut(s) 359, 550
AluI AGCT 2 cut(s) 359, 550
Alw26I GTCTC 2 cut(s) 383, 473
AlwI GGATC 2 cut(s) 161, 522
Ama87I CYCGRG 1 cut(s) 293
Aor13HI TCCGGA 1 cut(s) 260
AoxI GGCC 2 cut(s) 43, 347
ApoI RAATTY 1 cut(s) 629
AspA2I CCTAGG 1 cut(s) 431
AspS9I GGNCC 3 cut(s) 44, 282, 347
AsuHPI GGTGA 2 cut(s) 106, 218
AvaI CYCGRG 1 cut(s) 293
AvaII GGWCC 1 cut(s) 282
AvrII CCTAGG 1 cut(s) 431
BbsI GAAGAC 1 cut(s) 564
BccI CCATC 3 cut(s) 59, 137, 514
BcgI CGANNNNNNTGC 2 cut(s) 425, 459
BciT130I CCWGG 2 cut(s) 48, 201
BcoDI GTCTC 2 cut(s) 383, 473
BfaI CTAG 2 cut(s) 116, 432
BlnI CCTAGG 1 cut(s) 431
BmcAI AGTACT 1 cut(s) 374
Bme1390I CCNGG 2 cut(s) 48, 201
Bme18I GGWCC 1 cut(s) 282
BmeT110I CYCGRG 1 cut(s) 293
BmgT120I GGNCC 3 cut(s) 44, 282, 347
BmiI GGNNCC 2 cut(s) 54, 397
BmrFI CCNGG 2 cut(s) 48, 201
BpiI GAAGAC 1 cut(s) 564
BpmI CTGGAG 1 cut(s) 273
BpuEI CTTGAG 1 cut(s) 536
BsaJI CCNNGG 5 cut(s) 46, 47, 199, 278, 431
BsaWI WCCGGW 1 cut(s) 260
Bse118I RCCGGY 1 cut(s) 523
Bse1I ACTGG 2 cut(s) 256, 397
Bse3DI GCAATG 2 cut(s) 154, 628
BseAI TCCGGA 1 cut(s) 260
BseBI CCWGG 2 cut(s) 48, 201
BseDI CCNNGG 5 cut(s) 46, 47, 199, 278, 431
BseMI GCAATG 2 cut(s) 154, 628
BseMII CTCAG 1 cut(s) 378
BseNI ACTGG 2 cut(s) 256, 397
BseYI CCCAGC 1 cut(s) 527
BshFI GGCC 2 cut(s) 45, 349
BsiHKCI CYCGRG 1 cut(s) 293
BsiSI CCGG 2 cut(s) 261, 524
BsmAI GTCTC 2 cut(s) 383, 473
BsnI GGCC 2 cut(s) 45, 349
BsoBI CYCGRG 1 cut(s) 293
Bsp13I TCCGGA 1 cut(s) 260
Bsp143I GATC 4 cut(s) 153, 498, 514, 582
Bsp19I CCATGG 1 cut(s) 278
BspANI GGCC 2 cut(s) 45, 349
BspCNI CTCAG 1 cut(s) 379
BspEI TCCGGA 1 cut(s) 260
BspLI GGNNCC 2 cut(s) 54, 397
BspPI GGATC 2 cut(s) 161, 522
BsrDI GCAATG 2 cut(s) 154, 628
BsrFI RCCGGY 1 cut(s) 523
BsrI ACTGG 2 cut(s) 256, 397
BssAI RCCGGY 1 cut(s) 523
BssECI CCNNGG 5 cut(s) 46, 47, 199, 278, 431
BssMI GATC 4 cut(s) 153, 498, 514, 582
BssT1I CCWWGG 2 cut(s) 278, 431
Bst2UI CCWGG 2 cut(s) 48, 201
Bst4CI ACNGT 1 cut(s) 687
BstC8I GCNNGC 1 cut(s) 548
BstDEI CTNAG 2 cut(s) 387, 654
BstDSI CCRYGG 1 cut(s) 278
BstKTI GATC 4 cut(s) 156, 501, 517, 585
BstMAI GTCTC 2 cut(s) 383, 473
BstMBI GATC 4 cut(s) 153, 498, 514, 582
BstMWI GCNNNNNNNGC 1 cut(s) 547
BstNI CCWGG 2 cut(s) 48, 201
BstSCI CCNGG 2 cut(s) 46, 199
BstV2I GAAGAC 1 cut(s) 564
BstX2I RGATCY 2 cut(s) 153, 514
BstYI RGATCY 2 cut(s) 153, 514
BsuRI GGCC 2 cut(s) 45, 349
BtgI CCRYGG 1 cut(s) 278
BtsI GCAGTG 1 cut(s) 193
BtsIMutI CAGTG 1 cut(s) 193
Cac8I GCNNGC 1 cut(s) 548
Cfr10I RCCGGY 1 cut(s) 523
Cfr13I GGNCC 3 cut(s) 44, 282, 347
Csp6I GTAC 1 cut(s) 373
CviAII CATG 2 cut(s) 279, 400
CviJI RGCY 9 cut(s) 45, 115, 349, 359, 386, 420, 527, 550, 682
CviKI_1 RGCY 9 cut(s) 45, 115, 349, 359, 386, 420, 527, 550, 682
CviQI GTAC 1 cut(s) 373
DdeI CTNAG 2 cut(s) 387, 654
DpnI GATC 4 cut(s) 155, 500, 516, 584
DpnII GATC 4 cut(s) 153, 498, 514, 582
Eco130I CCWWGG 2 cut(s) 278, 431
Eco47I GGWCC 1 cut(s) 282
Eco88I CYCGRG 1 cut(s) 293
EcoO109I RGGNCCY 1 cut(s) 44
EcoRII CCWGG 2 cut(s) 46, 199
EcoT14I CCWWGG 2 cut(s) 278, 431
ErhI CCWWGG 2 cut(s) 278, 431
FaeI CATG 2 cut(s) 282, 403
FaiI YATR 9 cut(s) 86, 105, 186, 267, 280, 343, 401, 495, 675
FatI CATG 2 cut(s) 278, 399
FspBI CTAG 2 cut(s) 116, 432
GsaI CCCAGC 1 cut(s) 531
GsuI CTGGAG 1 cut(s) 273
HaeIII GGCC 2 cut(s) 45, 349
HapII CCGG 2 cut(s) 261, 524
Hin1II CATG 2 cut(s) 282, 403
HincII GTYRAC 1 cut(s) 300
HindII GTYRAC 1 cut(s) 300
HpaII CCGG 2 cut(s) 261, 524
HphI GGTGA 2 cut(s) 106, 218
Hpy166II GTNNAC 1 cut(s) 300
Hpy188I TCNGA 4 cut(s) 169, 427, 589, 641
Hpy188III TCNNGA 3 cut(s) 236, 261, 293
Hpy8I GTNNAC 1 cut(s) 300
Hpy99I CGWCG 2 cut(s) 566, 569
HpyAV CCTTC 1 cut(s) 295
HpyCH4III ACNGT 1 cut(s) 687
HpyCH4IV ACGT 1 cut(s) 100
HpyCH4V TGCA 1 cut(s) 541
HpyF10VI GCNNNNNNNGC 1 cut(s) 547
HpyF3I CTNAG 2 cut(s) 387, 654
HpySE526I ACGT 1 cut(s) 100
Hsp92II CATG 2 cut(s) 282, 403
Kpn2I TCCGGA 1 cut(s) 260
Kzo9I GATC 4 cut(s) 153, 498, 514, 582
LmnI GCTCC 1 cut(s) 356
MaeI CTAG 2 cut(s) 116, 432
MaeII ACGT 1 cut(s) 100
MaeIII GTNAC 3 cut(s) 71, 211, 519
MalI GATC 4 cut(s) 155, 500, 516, 584
MboI GATC 4 cut(s) 153, 498, 514, 582
MboII GAAGA 1 cut(s) 569
MflI RGATCY 2 cut(s) 153, 514
MluCI AATT 4 cut(s) 315, 487, 576, 629
MmeI TCCRAC 2 cut(s) 147, 619
MnlI CCTC 1 cut(s) 165
MroI TCCGGA 1 cut(s) 260
MseI TTAA 1 cut(s) 486
MspI CCGG 2 cut(s) 261, 524
MspR9I CCNGG 2 cut(s) 48, 201
MvaI CCWGG 2 cut(s) 48, 201
MwoI GCNNNNNNNGC 1 cut(s) 547
NcoI CCATGG 1 cut(s) 278
NdeII GATC 4 cut(s) 153, 498, 514, 582
NlaIII CATG 2 cut(s) 282, 403
NlaIV GGNNCC 2 cut(s) 54, 397
NmuCI GTSAC 1 cut(s) 71
PasI CCCWGGG 1 cut(s) 47
Psp6I CCWGG 2 cut(s) 46, 199
PspFI CCCAGC 1 cut(s) 527
PspGI CCWGG 2 cut(s) 46, 199
PspN4I GGNNCC 2 cut(s) 54, 397
PspPI GGNCC 3 cut(s) 44, 282, 347
PsuI RGATCY 2 cut(s) 153, 514
RsaI GTAC 1 cut(s) 374
RsaNI GTAC 1 cut(s) 373
SaqAI TTAA 1 cut(s) 486
Sau3AI GATC 4 cut(s) 153, 498, 514, 582
Sau96I GGNCC 3 cut(s) 44, 282, 347
ScaI AGTACT 1 cut(s) 374
ScrFI CCNGG 2 cut(s) 48, 201
SetI ASST 8 cut(s) 9, 17, 58, 103, 361, 433, 552, 600
SinI GGWCC 1 cut(s) 282
SmlI CTYRAG 1 cut(s) 551
SmoI CTYRAG 1 cut(s) 551
Sse9I AATT 4 cut(s) 315, 487, 576, 629
SspI AATATT 1 cut(s) 661
SspMI CTAG 2 cut(s) 116, 432
StyD4I CCNGG 2 cut(s) 46, 199
StyI CCWWGG 2 cut(s) 278, 431
TaaI ACNGT 1 cut(s) 687
TaiI ACGT 1 cut(s) 103
TaqI TCGA 1 cut(s) 29
TasI AATT 4 cut(s) 315, 487, 576, 629
TatI WGTACW 1 cut(s) 372
Tru1I TTAA 1 cut(s) 486
Tru9I TTAA 1 cut(s) 486
TscAI CASTG 1 cut(s) 200
TseFI GTSAC 1 cut(s) 71
Tsp45I GTSAC 1 cut(s) 71
TspDTI ATGAA 3 cut(s) 17, 112, 369
TspRI CASTG 1 cut(s) 200
VpaK11BI GGWCC 1 cut(s) 282
XapI RAATTY 1 cut(s) 629
XmaJI CCTAGG 1 cut(s) 431
XspI CTAG 2 cut(s) 116, 432
ZrmI AGTACT 1 cut(s) 374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.