Rh4DG198300

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0020725
Physical Location & Seq
Reverse (-)
38670229 .. 38679487
9259 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG198300.1

Sequence Viewer

Length: 708 bp
ATGGTGCATATTCGCCAGATGAACCTGATAAGGTTGATTGGTGGGTCGAGTAAAGAAATAGGCCCTGGGGAACCTTTTGATGATGGCAGTCACTCGGGAGTTATGGAGTTGGTGATACGTTATACATCGTGGCTAGACTTCATTCAAATCAAATATGATGATGGCAACGGGATTTCATCTTGGTCGGAGAGGCATGGTTGCCATAATGCTCACTGCCCTGGTGGTGAAGTTACCAAGATAAAACTTGATTATCCAGACGAAGTTCTAACTGGAGTTTCCGGATATATTGACATTCCATGGTCCTTCTTTCCCGAGTTGACCCTTACTCGCTCAATTACTTTCAAAAGCAACAAAAGAATATACGGGCCTTTTGGAGCTGAAACAGGAAAGTACTTTTCATTGGCTGAGACTGGAACCATGATTGTTGGGTTTTGTGGCTGGTCAGAACCTAGGCATTGTATTCGTTCTGGTATTCGTAAAATAGGACTTTGGATTGAGACTTTTAATTCTTATGAGATCAGTCCATCAAAGGATCTGTTACCGGCTGGGTATTTCTTGCAGAGCAAGCTCAAGGAAGACGACGACGACACCAAAATTGTGATCTCCGATAACAAGGTCATTGGAAACAAAGGCAAAGGCAATGGAAAATTTGTTGTCGGAAAAAGGACTACTAAGAATATTACTAATCTACATATTCGGCTACTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jacalin

Protein Analysis

235

Amino Acids

26.29

Weight (kDa)

8.26

Isoelectric Point (pI)

38.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Jacalin PF01419 23 - 149 8.5e-25 Jacalin-like lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0020725)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0000750.1_g000002
rosa_samantha Rh4AG201000 Rh4BG198200 Rh4CG212000 Rh4DG198300
rosa_wichuraiana Rw0G019000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 278
AclWI GGATC 1 cut(s) 540
AcsI RAATTY 1 cut(s) 647
AfaI GTAC 1 cut(s) 392
AgsI TTSAA 2 cut(s) 146, 343
AjnI CCWGG 2 cut(s) 64, 217
AluBI AGCT 2 cut(s) 377, 568
AluI AGCT 2 cut(s) 377, 568
Alw26I GTCTC 2 cut(s) 401, 491
AlwI GGATC 1 cut(s) 540
Ama87I CYCGRG 2 cut(s) 94, 311
Aor13HI TCCGGA 1 cut(s) 278
AoxI GGCC 2 cut(s) 61, 365
ApoI RAATTY 1 cut(s) 647
AspA2I CCTAGG 1 cut(s) 449
AspS9I GGNCC 3 cut(s) 62, 300, 365
AsuHPI GGTGA 2 cut(s) 124, 236
AvaI CYCGRG 2 cut(s) 94, 311
AvaII GGWCC 1 cut(s) 300
AvrII CCTAGG 1 cut(s) 449
BbsI GAAGAC 1 cut(s) 582
BccI CCATC 3 cut(s) 77, 155, 532
BcgI CGANNNNNNTGC 2 cut(s) 443, 477
BciT130I CCWGG 2 cut(s) 66, 219
BcoDI GTCTC 2 cut(s) 401, 491
BfaI CTAG 2 cut(s) 134, 450
BlnI CCTAGG 1 cut(s) 449
BmcAI AGTACT 1 cut(s) 392
Bme1390I CCNGG 2 cut(s) 66, 219
Bme18I GGWCC 1 cut(s) 300
BmeT110I CYCGRG 2 cut(s) 94, 311
BmgT120I GGNCC 3 cut(s) 62, 300, 365
BmiI GGNNCC 2 cut(s) 72, 415
BmrFI CCNGG 2 cut(s) 66, 219
BpiI GAAGAC 1 cut(s) 582
BpmI CTGGAG 1 cut(s) 291
BpuEI CTTGAG 1 cut(s) 554
BsaJI CCNNGG 5 cut(s) 64, 65, 217, 296, 449
BsaWI WCCGGW 1 cut(s) 278
Bse118I RCCGGY 1 cut(s) 541
Bse1I ACTGG 2 cut(s) 274, 415
Bse3DI GCAATG 1 cut(s) 646
BseAI TCCGGA 1 cut(s) 278
BseBI CCWGG 2 cut(s) 66, 219
BseDI CCNNGG 5 cut(s) 64, 65, 217, 296, 449
BseMI GCAATG 1 cut(s) 646
BseMII CTCAG 1 cut(s) 396
BseNI ACTGG 2 cut(s) 274, 415
BseYI CCCAGC 1 cut(s) 545
BshFI GGCC 2 cut(s) 63, 367
BsiHKCI CYCGRG 2 cut(s) 94, 311
BsiSI CCGG 2 cut(s) 279, 542
BsmAI GTCTC 2 cut(s) 401, 491
BsnI GGCC 2 cut(s) 63, 367
BsoBI CYCGRG 2 cut(s) 94, 311
Bsp13I TCCGGA 1 cut(s) 278
Bsp143I GATC 3 cut(s) 516, 532, 600
Bsp19I CCATGG 1 cut(s) 296
BspANI GGCC 2 cut(s) 63, 367
BspCNI CTCAG 1 cut(s) 397
BspEI TCCGGA 1 cut(s) 278
BspLI GGNNCC 2 cut(s) 72, 415
BspPI GGATC 1 cut(s) 540
BsrDI GCAATG 1 cut(s) 646
BsrFI RCCGGY 1 cut(s) 541
BsrI ACTGG 2 cut(s) 274, 415
BssAI RCCGGY 1 cut(s) 541
BssECI CCNNGG 5 cut(s) 64, 65, 217, 296, 449
BssMI GATC 3 cut(s) 516, 532, 600
BssT1I CCWWGG 2 cut(s) 296, 449
Bst2UI CCWGG 2 cut(s) 66, 219
Bst4CI ACNGT 1 cut(s) 705
BstC8I GCNNGC 1 cut(s) 566
BstDEI CTNAG 2 cut(s) 405, 672
BstDSI CCRYGG 1 cut(s) 296
BstKTI GATC 3 cut(s) 519, 535, 603
BstMAI GTCTC 2 cut(s) 401, 491
BstMBI GATC 3 cut(s) 516, 532, 600
BstMWI GCNNNNNNNGC 1 cut(s) 565
BstNI CCWGG 2 cut(s) 66, 219
BstSCI CCNGG 2 cut(s) 64, 217
BstV2I GAAGAC 1 cut(s) 582
BstX2I RGATCY 1 cut(s) 532
BstYI RGATCY 1 cut(s) 532
BsuRI GGCC 2 cut(s) 63, 367
BtgI CCRYGG 1 cut(s) 296
BtsI GCAGTG 1 cut(s) 211
BtsIMutI CAGTG 1 cut(s) 211
Cac8I GCNNGC 1 cut(s) 566
Cfr10I RCCGGY 1 cut(s) 541
Cfr13I GGNCC 3 cut(s) 62, 300, 365
Csp6I GTAC 1 cut(s) 391
CviAII CATG 3 cut(s) 194, 297, 418
CviJI RGCY 9 cut(s) 63, 133, 367, 377, 404, 438, 545, 568, 700
CviKI_1 RGCY 9 cut(s) 63, 133, 367, 377, 404, 438, 545, 568, 700
CviQI GTAC 1 cut(s) 391
DdeI CTNAG 2 cut(s) 405, 672
DpnI GATC 3 cut(s) 518, 534, 602
DpnII GATC 3 cut(s) 516, 532, 600
Eco130I CCWWGG 2 cut(s) 296, 449
Eco47I GGWCC 1 cut(s) 300
Eco88I CYCGRG 2 cut(s) 94, 311
EcoO109I RGGNCCY 1 cut(s) 62
EcoRII CCWGG 2 cut(s) 64, 217
EcoT14I CCWWGG 2 cut(s) 296, 449
ErhI CCWWGG 2 cut(s) 296, 449
FaeI CATG 3 cut(s) 197, 300, 421
FatI CATG 3 cut(s) 193, 296, 417
FspBI CTAG 2 cut(s) 134, 450
GsaI CCCAGC 1 cut(s) 549
GsuI CTGGAG 1 cut(s) 291
HaeIII GGCC 2 cut(s) 63, 367
HapII CCGG 2 cut(s) 279, 542
Hin1II CATG 3 cut(s) 197, 300, 421
HincII GTYRAC 1 cut(s) 318
HindII GTYRAC 1 cut(s) 318
HpaII CCGG 2 cut(s) 279, 542
HphI GGTGA 2 cut(s) 124, 236
Hpy166II GTNNAC 1 cut(s) 318
Hpy188I TCNGA 4 cut(s) 187, 445, 607, 659
Hpy188III TCNNGA 4 cut(s) 96, 254, 279, 311
Hpy8I GTNNAC 1 cut(s) 318
Hpy99I CGWCG 2 cut(s) 584, 587
HpyAV CCTTC 1 cut(s) 313
HpyCH4III ACNGT 1 cut(s) 705
HpyCH4IV ACGT 1 cut(s) 118
HpyCH4V TGCA 2 cut(s) 7, 559
HpyF10VI GCNNNNNNNGC 1 cut(s) 565
HpyF3I CTNAG 2 cut(s) 405, 672
HpySE526I ACGT 1 cut(s) 118
Hsp92II CATG 3 cut(s) 197, 300, 421
Kpn2I TCCGGA 1 cut(s) 278
Kzo9I GATC 3 cut(s) 516, 532, 600
LmnI GCTCC 1 cut(s) 374
MaeI CTAG 2 cut(s) 134, 450
MaeII ACGT 1 cut(s) 118
MaeIII GTNAC 3 cut(s) 89, 229, 537
MalI GATC 3 cut(s) 518, 534, 602
MboI GATC 3 cut(s) 516, 532, 600
MboII GAAGA 1 cut(s) 587
MflI RGATCY 1 cut(s) 532
MluCI AATT 4 cut(s) 333, 505, 594, 647
MmeI TCCRAC 2 cut(s) 165, 637
MnlI CCTC 1 cut(s) 183
MroI TCCGGA 1 cut(s) 278
MseI TTAA 1 cut(s) 504
MspI CCGG 2 cut(s) 279, 542
MspR9I CCNGG 2 cut(s) 66, 219
MvaI CCWGG 2 cut(s) 66, 219
MwoI GCNNNNNNNGC 1 cut(s) 565
NcoI CCATGG 1 cut(s) 296
NdeII GATC 3 cut(s) 516, 532, 600
NlaIII CATG 3 cut(s) 197, 300, 421
NlaIV GGNNCC 2 cut(s) 72, 415
NmuCI GTSAC 1 cut(s) 89
PasI CCCWGGG 1 cut(s) 65
Psp6I CCWGG 2 cut(s) 64, 217
PspFI CCCAGC 1 cut(s) 545
PspGI CCWGG 2 cut(s) 64, 217
PspN4I GGNNCC 2 cut(s) 72, 415
PspPI GGNCC 3 cut(s) 62, 300, 365
PsuI RGATCY 1 cut(s) 532
RsaI GTAC 1 cut(s) 392
RsaNI GTAC 1 cut(s) 391
SaqAI TTAA 1 cut(s) 504
Sau3AI GATC 3 cut(s) 516, 532, 600
Sau96I GGNCC 3 cut(s) 62, 300, 365
ScaI AGTACT 1 cut(s) 392
ScrFI CCNGG 2 cut(s) 66, 219
SetI ASST 8 cut(s) 27, 35, 76, 121, 379, 451, 570, 618
SinI GGWCC 1 cut(s) 300
SmlI CTYRAG 1 cut(s) 569
SmoI CTYRAG 1 cut(s) 569
Sse9I AATT 4 cut(s) 333, 505, 594, 647
SspI AATATT 1 cut(s) 679
SspMI CTAG 2 cut(s) 134, 450
StyD4I CCNGG 2 cut(s) 64, 217
StyI CCWWGG 2 cut(s) 296, 449
TaaI ACNGT 1 cut(s) 705
TaiI ACGT 1 cut(s) 121
TaqI TCGA 1 cut(s) 47
TasI AATT 4 cut(s) 333, 505, 594, 647
TatI WGTACW 1 cut(s) 390
Tru1I TTAA 1 cut(s) 504
Tru9I TTAA 1 cut(s) 504
TscAI CASTG 1 cut(s) 218
TseFI GTSAC 1 cut(s) 89
Tsp45I GTSAC 1 cut(s) 89
TspDTI ATGAA 4 cut(s) 35, 130, 165, 387
TspRI CASTG 1 cut(s) 218
VpaK11BI GGWCC 1 cut(s) 300
XapI RAATTY 1 cut(s) 647
XmaJI CCTAGG 1 cut(s) 449
XspI CTAG 2 cut(s) 134, 450
ZrmI AGTACT 1 cut(s) 392
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.