Rh4CG212000

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0020725
Physical Location & Seq
Reverse (-)
44135453 .. 44146412
10960 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG212000.1

Sequence Viewer

Length: 693 bp
ATGATGAACCTGATAAGGTTTATTGGTGGGTCGAGTAAAGAAATAGGCCCTGGGGAACCTTTTGATGATGGCAGTCACTTGGGAGTTATGGAGTTGGTGGTACGTTATACATCATGGCTAGACTTCATTCAAATCAAATACGTTGATGGCAACGGGATCTCATCTTGGTCGGAGAGGCGTGGTTGCCATAATGCTCACTGCCCTGGTGGTGAAGTTACCAAGATAAAACTTGATTATCCAGACGAAGTTCTAACTGGAGTTTCCGGATATATTGACACTCCATGGTCCTTCTTTCCCGAGTTGACCCTTACTCGCTCAATTACTTTCAAAAGCAACAAAAGAATATACGGGCCTTTTGGAGCTGAAACAGGAAAGTACTTTTCATTGGCTGAGACTGGAACCATGATTGTTGGGTTTTATGGCTGGTCAGAACCTAGGCATTGTATTCGTTCTGGTATTCGTAAAATAGGACTTTGGATTGAGACTTTTAATTCTTATGAGATCAGTCCATCAAAGGATCTGTTACCGGCTGGGTATTTCTTGCAGAGCAAGCTCAAGGAGGACGACGACGACACCAAAATTGTGATCTCCGATAACAAGGTCATTGGAAACAAAGGCAAAGGCAATGGAAAATTTGTTGTCGGAAAAAGGACTACTAAGAATATTACTAATCTACATATTCGGCTACTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jacalin

Protein Analysis

230

Amino Acids

25.76

Weight (kDa)

8.64

Isoelectric Point (pI)

36.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Jacalin PF01419 18 - 144 1.6e-23 Jacalin-like lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020725)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0000750.1_g000002
rosa_samantha Rh4AG201000 Rh4BG198200 Rh4CG212000 Rh4DG198300
rosa_wichuraiana Rw0G019000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 263
AclWI GGATC 2 cut(s) 164, 525
AcsI RAATTY 1 cut(s) 632
AfaI GTAC 2 cut(s) 102, 377
AgsI TTSAA 2 cut(s) 131, 328
AjnI CCWGG 2 cut(s) 49, 202
AluBI AGCT 2 cut(s) 362, 553
AluI AGCT 2 cut(s) 362, 553
Alw26I GTCTC 2 cut(s) 386, 476
AlwI GGATC 2 cut(s) 164, 525
Ama87I CYCGRG 1 cut(s) 296
Aor13HI TCCGGA 1 cut(s) 263
AoxI GGCC 2 cut(s) 46, 350
ApoI RAATTY 1 cut(s) 632
AspA2I CCTAGG 1 cut(s) 434
AspS9I GGNCC 3 cut(s) 47, 285, 350
AsuHPI GGTGA 1 cut(s) 221
AvaI CYCGRG 1 cut(s) 296
AvaII GGWCC 1 cut(s) 285
AvrII CCTAGG 1 cut(s) 434
BccI CCATC 3 cut(s) 62, 140, 517
BcgI CGANNNNNNTGC 2 cut(s) 428, 462
BciT130I CCWGG 2 cut(s) 51, 204
BcoDI GTCTC 2 cut(s) 386, 476
BfaI CTAG 2 cut(s) 119, 435
BlnI CCTAGG 1 cut(s) 434
BmcAI AGTACT 1 cut(s) 377
Bme1390I CCNGG 2 cut(s) 51, 204
Bme18I GGWCC 1 cut(s) 285
BmeT110I CYCGRG 1 cut(s) 296
BmgT120I GGNCC 3 cut(s) 47, 285, 350
BmiI GGNNCC 2 cut(s) 57, 400
BmrFI CCNGG 2 cut(s) 51, 204
BpmI CTGGAG 1 cut(s) 276
BpuEI CTTGAG 1 cut(s) 539
BsaJI CCNNGG 5 cut(s) 49, 50, 202, 281, 434
BsaWI WCCGGW 1 cut(s) 263
Bse118I RCCGGY 1 cut(s) 526
Bse1I ACTGG 2 cut(s) 259, 400
Bse3DI GCAATG 1 cut(s) 631
BseAI TCCGGA 1 cut(s) 263
BseBI CCWGG 2 cut(s) 51, 204
BseDI CCNNGG 5 cut(s) 49, 50, 202, 281, 434
BseMI GCAATG 1 cut(s) 631
BseMII CTCAG 1 cut(s) 381
BseNI ACTGG 2 cut(s) 259, 400
BseYI CCCAGC 1 cut(s) 530
BshFI GGCC 2 cut(s) 48, 352
BsiHKCI CYCGRG 1 cut(s) 296
BsiSI CCGG 2 cut(s) 264, 527
BsmAI GTCTC 2 cut(s) 386, 476
BsnI GGCC 2 cut(s) 48, 352
BsoBI CYCGRG 1 cut(s) 296
Bsp13I TCCGGA 1 cut(s) 263
Bsp143I GATC 4 cut(s) 156, 501, 517, 585
Bsp19I CCATGG 1 cut(s) 281
BspANI GGCC 2 cut(s) 48, 352
BspCNI CTCAG 1 cut(s) 382
BspEI TCCGGA 1 cut(s) 263
BspLI GGNNCC 2 cut(s) 57, 400
BspPI GGATC 2 cut(s) 164, 525
BsrDI GCAATG 1 cut(s) 631
BsrFI RCCGGY 1 cut(s) 526
BsrI ACTGG 2 cut(s) 259, 400
BssAI RCCGGY 1 cut(s) 526
BssECI CCNNGG 5 cut(s) 49, 50, 202, 281, 434
BssMI GATC 4 cut(s) 156, 501, 517, 585
BssT1I CCWWGG 2 cut(s) 281, 434
Bst2UI CCWGG 2 cut(s) 51, 204
Bst4CI ACNGT 1 cut(s) 690
BstC8I GCNNGC 1 cut(s) 551
BstDEI CTNAG 2 cut(s) 390, 657
BstDSI CCRYGG 1 cut(s) 281
BstKTI GATC 4 cut(s) 159, 504, 520, 588
BstMAI GTCTC 2 cut(s) 386, 476
BstMBI GATC 4 cut(s) 156, 501, 517, 585
BstMWI GCNNNNNNNGC 1 cut(s) 550
BstNI CCWGG 2 cut(s) 51, 204
BstSCI CCNGG 2 cut(s) 49, 202
BstX2I RGATCY 2 cut(s) 156, 517
BstYI RGATCY 2 cut(s) 156, 517
BsuRI GGCC 2 cut(s) 48, 352
BtgI CCRYGG 1 cut(s) 281
BtsI GCAGTG 1 cut(s) 196
BtsIMutI CAGTG 1 cut(s) 196
Cac8I GCNNGC 1 cut(s) 551
Cfr10I RCCGGY 1 cut(s) 526
Cfr13I GGNCC 3 cut(s) 47, 285, 350
Csp6I GTAC 2 cut(s) 101, 376
CviAII CATG 3 cut(s) 114, 282, 403
CviJI RGCY 9 cut(s) 48, 118, 352, 362, 389, 423, 530, 553, 685
CviKI_1 RGCY 9 cut(s) 48, 118, 352, 362, 389, 423, 530, 553, 685
CviQI GTAC 2 cut(s) 101, 376
DdeI CTNAG 2 cut(s) 390, 657
DpnI GATC 4 cut(s) 158, 503, 519, 587
DpnII GATC 4 cut(s) 156, 501, 517, 585
Eco130I CCWWGG 2 cut(s) 281, 434
Eco47I GGWCC 1 cut(s) 285
Eco88I CYCGRG 1 cut(s) 296
EcoO109I RGGNCCY 1 cut(s) 47
EcoRII CCWGG 2 cut(s) 49, 202
EcoT14I CCWWGG 2 cut(s) 281, 434
ErhI CCWWGG 2 cut(s) 281, 434
FaeI CATG 3 cut(s) 117, 285, 406
FatI CATG 3 cut(s) 113, 281, 402
FspBI CTAG 2 cut(s) 119, 435
GsaI CCCAGC 1 cut(s) 534
GsuI CTGGAG 1 cut(s) 276
HaeIII GGCC 2 cut(s) 48, 352
HapII CCGG 2 cut(s) 264, 527
Hin1II CATG 3 cut(s) 117, 285, 406
HincII GTYRAC 1 cut(s) 303
HindII GTYRAC 1 cut(s) 303
HpaII CCGG 2 cut(s) 264, 527
HphI GGTGA 1 cut(s) 221
Hpy166II GTNNAC 1 cut(s) 303
Hpy188I TCNGA 4 cut(s) 172, 430, 592, 644
Hpy188III TCNNGA 3 cut(s) 239, 264, 296
Hpy8I GTNNAC 1 cut(s) 303
Hpy99I CGWCG 2 cut(s) 569, 572
HpyAV CCTTC 1 cut(s) 298
HpyCH4III ACNGT 1 cut(s) 690
HpyCH4IV ACGT 2 cut(s) 103, 141
HpyCH4V TGCA 1 cut(s) 544
HpyF10VI GCNNNNNNNGC 1 cut(s) 550
HpyF3I CTNAG 2 cut(s) 390, 657
HpySE526I ACGT 2 cut(s) 103, 141
Hsp92II CATG 3 cut(s) 117, 285, 406
Kpn2I TCCGGA 1 cut(s) 263
Kzo9I GATC 4 cut(s) 156, 501, 517, 585
LmnI GCTCC 1 cut(s) 359
MaeI CTAG 2 cut(s) 119, 435
MaeII ACGT 2 cut(s) 103, 141
MaeIII GTNAC 3 cut(s) 74, 214, 522
MalI GATC 4 cut(s) 158, 503, 519, 587
MboI GATC 4 cut(s) 156, 501, 517, 585
MflI RGATCY 2 cut(s) 156, 517
MluCI AATT 4 cut(s) 318, 490, 579, 632
MmeI TCCRAC 2 cut(s) 150, 622
MnlI CCTC 2 cut(s) 168, 553
MroI TCCGGA 1 cut(s) 263
MseI TTAA 1 cut(s) 489
MspI CCGG 2 cut(s) 264, 527
MspR9I CCNGG 2 cut(s) 51, 204
MvaI CCWGG 2 cut(s) 51, 204
MwoI GCNNNNNNNGC 1 cut(s) 550
NcoI CCATGG 1 cut(s) 281
NdeII GATC 4 cut(s) 156, 501, 517, 585
NlaIII CATG 3 cut(s) 117, 285, 406
NlaIV GGNNCC 2 cut(s) 57, 400
NmuCI GTSAC 1 cut(s) 74
PasI CCCWGGG 1 cut(s) 50
Psp6I CCWGG 2 cut(s) 49, 202
PspFI CCCAGC 1 cut(s) 530
PspGI CCWGG 2 cut(s) 49, 202
PspN4I GGNNCC 2 cut(s) 57, 400
PspPI GGNCC 3 cut(s) 47, 285, 350
PsuI RGATCY 2 cut(s) 156, 517
RsaI GTAC 2 cut(s) 102, 377
RsaNI GTAC 2 cut(s) 101, 376
SaqAI TTAA 1 cut(s) 489
Sau3AI GATC 4 cut(s) 156, 501, 517, 585
Sau96I GGNCC 3 cut(s) 47, 285, 350
ScaI AGTACT 1 cut(s) 377
ScrFI CCNGG 2 cut(s) 51, 204
SetI ASST 9 cut(s) 12, 20, 61, 106, 144, 364, 436, 555, 603
SinI GGWCC 1 cut(s) 285
SmlI CTYRAG 1 cut(s) 554
SmoI CTYRAG 1 cut(s) 554
Sse9I AATT 4 cut(s) 318, 490, 579, 632
SspI AATATT 1 cut(s) 664
SspMI CTAG 2 cut(s) 119, 435
StyD4I CCNGG 2 cut(s) 49, 202
StyI CCWWGG 2 cut(s) 281, 434
TaaI ACNGT 1 cut(s) 690
TaiI ACGT 2 cut(s) 106, 144
TaqI TCGA 1 cut(s) 32
TasI AATT 4 cut(s) 318, 490, 579, 632
TatI WGTACW 1 cut(s) 375
Tru1I TTAA 1 cut(s) 489
Tru9I TTAA 1 cut(s) 489
TscAI CASTG 1 cut(s) 203
TseFI GTSAC 1 cut(s) 74
Tsp45I GTSAC 1 cut(s) 74
TspDTI ATGAA 3 cut(s) 20, 115, 372
TspRI CASTG 1 cut(s) 203
VpaK11BI GGWCC 1 cut(s) 285
XapI RAATTY 1 cut(s) 632
XmaJI CCTAGG 1 cut(s) 434
XspI CTAG 2 cut(s) 119, 435
ZrmI AGTACT 1 cut(s) 377
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.