Rh4BG198200

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0020725
Physical Location & Seq
Reverse (-)
34183936 .. 34189302
5367 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG198200.1

Sequence Viewer

Length: 489 bp
ATGCAGATCAAGCTTGATTATCCGGACGAATTTTTGACTTCAGTTCATGGACATTATAATAAGCTGTGGTACTTGCCGACCAATGTTTGCTCCCTTACTTTCAAGAGCAACAAGTTCAGGGAAATGAGGGCAACCACTGTGGAGCTTACGCTGTTGGAAATACATATAATTTTCATATCAAGCAACAACAGAATATACGGGCCTTTTGGAGCTGAAACAGGAAAGTACTTTTCATTGGCTGAGACTGGAACCATGATTGTTGGGTTTTATGGGTGGTCAGAACCTAGGCATTGTATTCGTTCTGGTATTCGTAAAATAGGACTTTGGATTGAGACTTTTAATTCTTATGAGATCAGTCGATCAAAGGATCTGTTACCGGCTGGGTATTTCTTGCAGAGCAAGCTCAAGGAAGACGACGACGACACGAAAATTGTGATCTCCGATAACAAGGTCATTGGAAACAAAGGCAAGGCAATGAAAAATTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jacalin

Protein Analysis

162

Amino Acids

18.63

Weight (kDa)

8.78

Isoelectric Point (pI)

39.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Jacalin PF01419 55 - 94 9.2e-06 Jacalin-like lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020725)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0000750.1_g000002
rosa_samantha Rh4AG201000 Rh4BG198200 Rh4CG212000 Rh4DG198300
rosa_wichuraiana Rw0G019000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 57
AccIII TCCGGA 1 cut(s) 22
AclWI GGATC 1 cut(s) 375
AcsI RAATTY 2 cut(s) 29, 481
AcuI CTGAAG 1 cut(s) 24
AfaI GTAC 2 cut(s) 71, 227
AgsI TTSAA 1 cut(s) 103
AluBI AGCT 5 cut(s) 13, 64, 145, 212, 403
AluI AGCT 5 cut(s) 13, 64, 145, 212, 403
Alw26I GTCTC 2 cut(s) 236, 326
AlwI GGATC 1 cut(s) 375
Aor13HI TCCGGA 1 cut(s) 22
AoxI GGCC 1 cut(s) 200
ApoI RAATTY 2 cut(s) 29, 481
AspA2I CCTAGG 1 cut(s) 284
AspS9I GGNCC 1 cut(s) 200
AvrII CCTAGG 1 cut(s) 284
BbsI GAAGAC 1 cut(s) 417
BcgI CGANNNNNNTGC 2 cut(s) 278, 312
BcoDI GTCTC 2 cut(s) 236, 326
BfaI CTAG 1 cut(s) 285
BlnI CCTAGG 1 cut(s) 284
BmcAI AGTACT 1 cut(s) 227
BmgT120I GGNCC 1 cut(s) 200
BmiI GGNNCC 1 cut(s) 250
BpiI GAAGAC 1 cut(s) 417
BpuEI CTTGAG 1 cut(s) 389
BsaJI CCNNGG 1 cut(s) 284
BsaWI WCCGGW 1 cut(s) 22
Bse118I RCCGGY 1 cut(s) 376
Bse1I ACTGG 1 cut(s) 250
Bse3DI GCAATG 1 cut(s) 480
BseAI TCCGGA 1 cut(s) 22
BseDI CCNNGG 1 cut(s) 284
BseMI GCAATG 1 cut(s) 480
BseMII CTCAG 1 cut(s) 231
BseNI ACTGG 1 cut(s) 250
BseYI CCCAGC 1 cut(s) 380
BshFI GGCC 1 cut(s) 202
BsiSI CCGG 2 cut(s) 23, 377
BsmAI GTCTC 2 cut(s) 236, 326
BsnI GGCC 1 cut(s) 202
Bsp13I TCCGGA 1 cut(s) 22
Bsp143I GATC 5 cut(s) 6, 351, 359, 367, 435
BspANI GGCC 1 cut(s) 202
BspCNI CTCAG 1 cut(s) 232
BspEI TCCGGA 1 cut(s) 22
BspLI GGNNCC 1 cut(s) 250
BspPI GGATC 1 cut(s) 375
BsrDI GCAATG 1 cut(s) 480
BsrFI RCCGGY 1 cut(s) 376
BsrI ACTGG 1 cut(s) 250
BssAI RCCGGY 1 cut(s) 376
BssECI CCNNGG 1 cut(s) 284
BssMI GATC 5 cut(s) 6, 351, 359, 367, 435
BssT1I CCWWGG 1 cut(s) 284
Bst4CI ACNGT 1 cut(s) 139
BstC8I GCNNGC 1 cut(s) 401
BstDEI CTNAG 1 cut(s) 240
BstKTI GATC 5 cut(s) 9, 354, 362, 370, 438
BstMAI GTCTC 2 cut(s) 236, 326
BstMBI GATC 5 cut(s) 6, 351, 359, 367, 435
BstMWI GCNNNNNNNGC 2 cut(s) 10, 400
BstV2I GAAGAC 1 cut(s) 417
BstX2I RGATCY 1 cut(s) 367
BstYI RGATCY 1 cut(s) 367
BsuRI GGCC 1 cut(s) 202
BtsIMutI CAGTG 1 cut(s) 135
Cac8I GCNNGC 1 cut(s) 401
Cfr10I RCCGGY 1 cut(s) 376
Cfr13I GGNCC 1 cut(s) 200
Csp6I GTAC 2 cut(s) 70, 226
CspCI CAANNNNNGTGG 2 cut(s) 120, 155
CviAII CATG 2 cut(s) 47, 253
CviJI RGCY 8 cut(s) 13, 64, 145, 202, 212, 239, 380, 403
CviKI_1 RGCY 8 cut(s) 13, 64, 145, 202, 212, 239, 380, 403
CviQI GTAC 2 cut(s) 70, 226
DdeI CTNAG 1 cut(s) 240
DpnI GATC 5 cut(s) 8, 353, 361, 369, 437
DpnII GATC 5 cut(s) 6, 351, 359, 367, 435
Eco130I CCWWGG 1 cut(s) 284
Eco57I CTGAAG 1 cut(s) 24
EcoT14I CCWWGG 1 cut(s) 284
ErhI CCWWGG 1 cut(s) 284
FaeI CATG 2 cut(s) 50, 256
FaiI YATR 9 cut(s) 48, 57, 165, 167, 176, 196, 254, 270, 348
FatI CATG 2 cut(s) 46, 252
FspBI CTAG 1 cut(s) 285
GsaI CCCAGC 1 cut(s) 384
HaeIII GGCC 1 cut(s) 202
HapII CCGG 2 cut(s) 23, 377
Hin1II CATG 2 cut(s) 50, 256
HindIII AAGCTT 1 cut(s) 11
HpaII CCGG 2 cut(s) 23, 377
Hpy188I TCNGA 2 cut(s) 280, 442
Hpy188III TCNNGA 2 cut(s) 23, 103
Hpy99I CGWCG 2 cut(s) 419, 422
HpyCH4III ACNGT 1 cut(s) 139
HpyCH4V TGCA 2 cut(s) 4, 394
HpyF10VI GCNNNNNNNGC 2 cut(s) 10, 400
HpyF3I CTNAG 1 cut(s) 240
Hsp92II CATG 2 cut(s) 50, 256
Kpn2I TCCGGA 1 cut(s) 22
Kzo9I GATC 5 cut(s) 6, 351, 359, 367, 435
LmnI GCTCC 3 cut(s) 95, 142, 209
LpnPI CCDG 7 cut(s) 36, 103, 204, 231, 288, 366, 390
MaeI CTAG 1 cut(s) 285
MaeIII GTNAC 1 cut(s) 372
MalI GATC 5 cut(s) 8, 353, 361, 369, 437
MboI GATC 5 cut(s) 6, 351, 359, 367, 435
MboII GAAGA 1 cut(s) 422
MflI RGATCY 1 cut(s) 367
MluCI AATT 5 cut(s) 29, 168, 340, 429, 481
MmeI TCCRAC 1 cut(s) 135
MnlI CCTC 1 cut(s) 120
MroI TCCGGA 1 cut(s) 22
MseI TTAA 1 cut(s) 339
MspI CCGG 2 cut(s) 23, 377
MwoI GCNNNNNNNGC 2 cut(s) 10, 400
NdeII GATC 5 cut(s) 6, 351, 359, 367, 435
NlaIII CATG 2 cut(s) 50, 256
NlaIV GGNNCC 1 cut(s) 250
PsiI TTATAA 1 cut(s) 57
PspFI CCCAGC 1 cut(s) 380
PspN4I GGNNCC 1 cut(s) 250
PspPI GGNCC 1 cut(s) 200
PsuI RGATCY 1 cut(s) 367
RsaI GTAC 2 cut(s) 71, 227
RsaNI GTAC 2 cut(s) 70, 226
SaqAI TTAA 1 cut(s) 339
Sau3AI GATC 5 cut(s) 6, 351, 359, 367, 435
Sau96I GGNCC 1 cut(s) 200
ScaI AGTACT 1 cut(s) 227
SetI ASST 7 cut(s) 15, 66, 147, 214, 286, 405, 453
SmlI CTYRAG 1 cut(s) 404
SmoI CTYRAG 1 cut(s) 404
Sse9I AATT 5 cut(s) 29, 168, 340, 429, 481
SspMI CTAG 1 cut(s) 285
StyI CCWWGG 1 cut(s) 284
TaaI ACNGT 1 cut(s) 139
TaqI TCGA 1 cut(s) 358
TasI AATT 5 cut(s) 29, 168, 340, 429, 481
TatI WGTACW 1 cut(s) 225
Tru1I TTAA 1 cut(s) 339
Tru9I TTAA 1 cut(s) 339
TscAI CASTG 1 cut(s) 142
TspDTI ATGAA 3 cut(s) 35, 163, 222
TspRI CASTG 1 cut(s) 142
XapI RAATTY 2 cut(s) 29, 481
XmaJI CCTAGG 1 cut(s) 284
XspI CTAG 1 cut(s) 285
ZrmI AGTACT 1 cut(s) 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.