Rh4AG201000

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0020725
Physical Location & Seq
Reverse (-)
48613411 .. 48621887
8477 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG201000.1

Sequence Viewer

Length: 318 bp
ATGCAGATCAAGCTTGATTATCCGGACGAATTTTTGACTTCAGTTCATGGACATTATAATAAGCTGTGGTACTTGCCGACCAATGTTTGCTCCCTTACTTTCAAGAGCAACAAGTTCAGGGAAATGAGGGCAACCACTGTGGAGCTTACGCTGTTGGAAATACATATAATTTTCATATCAAGGGTGGAGCAGTTTTTGAAAGGAATTCTTTTCACTTGTACAGTTGGACTCAAATTCGGCGGTGTAGAGGTTGAAGAAGAAGCAGGAAAACTGAGGAAGTGGATTGACCCCAAAAACCCGCATGCTCAAAAGGCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jacalin

Protein Analysis

105

Amino Acids

12.2

Weight (kDa)

8.58

Isoelectric Point (pI)

34.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Jacalin PF01419 2 - 43 3.7e-06 Jacalin-like lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020725)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0000750.1_g000002
rosa_samantha Rh4AG201000 Rh4BG198200 Rh4CG212000 Rh4DG198300
rosa_wichuraiana Rw0G019000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 57
AccIII TCCGGA 1 cut(s) 22
AciI CCGC 2 cut(s) 240, 299
AcsI RAATTY 3 cut(s) 29, 204, 233
AcuI CTGAAG 1 cut(s) 24
AfaI GTAC 2 cut(s) 71, 220
AgsI TTSAA 3 cut(s) 103, 199, 254
AluBI AGCT 3 cut(s) 13, 64, 145
AluI AGCT 3 cut(s) 13, 64, 145
Aor13HI TCCGGA 1 cut(s) 22
ApoI RAATTY 3 cut(s) 29, 204, 233
BsaWI WCCGGW 1 cut(s) 22
BseAI TCCGGA 1 cut(s) 22
BseMII CTCAG 1 cut(s) 263
BsiSI CCGG 1 cut(s) 23
Bsp13I TCCGGA 1 cut(s) 22
Bsp1407I TGTACA 1 cut(s) 218
Bsp143I GATC 1 cut(s) 6
BspACI CCGC 2 cut(s) 240, 299
BspCNI CTCAG 1 cut(s) 264
BspEI TCCGGA 1 cut(s) 22
BsrGI TGTACA 1 cut(s) 218
BssMI GATC 1 cut(s) 6
Bst4CI ACNGT 2 cut(s) 139, 223
BstAUI TGTACA 1 cut(s) 218
BstC8I GCNNGC 1 cut(s) 303
BstDEI CTNAG 1 cut(s) 272
BstKTI GATC 1 cut(s) 9
BstMBI GATC 1 cut(s) 6
BstMWI GCNNNNNNNGC 2 cut(s) 10, 311
BstNSI RCATGY 1 cut(s) 305
BtsIMutI CAGTG 1 cut(s) 135
Cac8I GCNNGC 1 cut(s) 303
Csp6I GTAC 2 cut(s) 70, 219
CspCI CAANNNNNGTGG 2 cut(s) 120, 155
CviAII CATG 2 cut(s) 47, 302
CviJI RGCY 3 cut(s) 13, 64, 145
CviKI_1 RGCY 3 cut(s) 13, 64, 145
CviQI GTAC 2 cut(s) 70, 219
DdeI CTNAG 1 cut(s) 272
DpnI GATC 1 cut(s) 8
DpnII GATC 1 cut(s) 6
Eco57I CTGAAG 1 cut(s) 24
EcoRI GAATTC 1 cut(s) 204
FaeI CATG 2 cut(s) 50, 305
FaiI YATR 6 cut(s) 48, 57, 165, 167, 176, 303
FalI AAGNNNNNCTT 2 cut(s) 192, 224
FatI CATG 2 cut(s) 46, 301
FauI CCCGC 1 cut(s) 306
HapII CCGG 1 cut(s) 23
Hin1II CATG 2 cut(s) 50, 305
HindIII AAGCTT 1 cut(s) 11
HinfI GANTC 1 cut(s) 228
HpaII CCGG 1 cut(s) 23
Hpy188III TCNNGA 2 cut(s) 23, 103
HpyCH4III ACNGT 2 cut(s) 139, 223
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 2 cut(s) 10, 311
HpyF3I CTNAG 1 cut(s) 272
Hsp92II CATG 2 cut(s) 50, 305
Kpn2I TCCGGA 1 cut(s) 22
Kzo9I GATC 1 cut(s) 6
LmnI GCTCC 3 cut(s) 95, 142, 187
LpnPI CCDG 3 cut(s) 36, 103, 249
MalI GATC 1 cut(s) 8
MboI GATC 1 cut(s) 6
MboII GAAGA 2 cut(s) 266, 269
MluCI AATT 4 cut(s) 29, 168, 204, 233
MlyI GAGTC 1 cut(s) 222
MmeI TCCRAC 2 cut(s) 135, 205
MnlI CCTC 3 cut(s) 120, 241, 267
MroI TCCGGA 1 cut(s) 22
MspI CCGG 1 cut(s) 23
MwoI GCNNNNNNNGC 2 cut(s) 10, 311
NdeII GATC 1 cut(s) 6
NlaIII CATG 2 cut(s) 50, 305
NspI RCATGY 1 cut(s) 305
PaeI GCATGC 1 cut(s) 305
PleI GAGTC 1 cut(s) 222
PpsI GAGTC 1 cut(s) 222
PsiI TTATAA 1 cut(s) 57
RsaI GTAC 2 cut(s) 71, 220
RsaNI GTAC 2 cut(s) 70, 219
Sau3AI GATC 1 cut(s) 6
SchI GAGTC 1 cut(s) 222
SetI ASST 4 cut(s) 15, 66, 147, 252
SphI GCATGC 1 cut(s) 305
Sse9I AATT 4 cut(s) 29, 168, 204, 233
SsiI CCGC 2 cut(s) 240, 299
TaaI ACNGT 2 cut(s) 139, 223
TasI AATT 4 cut(s) 29, 168, 204, 233
TatI WGTACW 1 cut(s) 218
TscAI CASTG 1 cut(s) 142
TspDTI ATGAA 2 cut(s) 35, 163
TspRI CASTG 1 cut(s) 142
XapI RAATTY 3 cut(s) 29, 204, 233
XceI RCATGY 1 cut(s) 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.